BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034450
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXP|A Chain A, Crystal Structure Of A Putative Aminoglycoside
Phosphotransferase (Reut_a1007) From Ralstonia Eutropha
Jmp134 At 2.32 A Resolution
Length = 359
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 11 PFQPAHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVL 70
P + D +AL + +V F ++ QF GQSNPTF + V G + YV
Sbjct: 14 PVADQQRFDTEALEAWXRQHVEGFA---GPLSVEQFKGGQSNPTFKL-VTPG---QTYVX 66
Query: 71 RKKPA--GKLLESAHAVDREFQV 91
R KP KLL SAHA++RE++V
Sbjct: 67 RAKPGPKSKLLPSAHAIEREYRV 89
>pdb|1VMD|A Chain A, Crystal Structure Of Methylglyoxal Synthase (Tm1185) From
Thermotoga Maritima At 2.06 A Resolution
pdb|1VMD|B Chain B, Crystal Structure Of Methylglyoxal Synthase (Tm1185) From
Thermotoga Maritima At 2.06 A Resolution
Length = 178
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 10 SPFQP-AHQLDLDALLRYASV-NVP-DFPRSPSKFTIS 44
P +P AH +D+ AL+R A+V N+P RS + F IS
Sbjct: 107 DPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLIS 144
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEESGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEQSGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEESGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEQSGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,752,881
Number of Sequences: 62578
Number of extensions: 100191
Number of successful extensions: 163
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 6
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)