BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034450
         (94 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q80XL6|ACD11_MOUSE Acyl-CoA dehydrogenase family member 11 OS=Mus musculus GN=Acad11
          PE=1 SV=2
          Length = 779

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 6/88 (6%)

Query: 5  TGDLVSPFQPAHQLDLDALLRYASVNVPDF-PRSPSKFTISQFGHGQSNPTFLMEVGSGA 63
          T D V    P H+ DL +L  Y + ++P F   S +  T++Q+  GQSNPTF ++ GS A
Sbjct: 6  TSDTVEVL-PQHKFDLRSLEAYLNQHLPGFGSDSRAVLTVTQYRSGQSNPTFFLQKGSQA 64

Query: 64 AVKRYVLRKKPAGKLLESAHAVDREFQV 91
              YVLRKKP G LL  AH +DREF++
Sbjct: 65 ----YVLRKKPPGSLLPKAHKIDREFKI 88


>sp|Q5ZHT1|ACD11_CHICK Acyl-CoA dehydrogenase family member 11 OS=Gallus gallus
          GN=ACAD11 PE=2 SV=1
          Length = 777

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 5/77 (6%)

Query: 16 HQLDLDALLRYASVNVPDFPRSPS-KFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKP 74
          H+ D  +L RY    +P FP+ P+   ++ Q+  GQSNPTF ++ G  A    YVLRKKP
Sbjct: 14 HRFDQGSLERYLCRCLPGFPQQPAGALSVRQYSSGQSNPTFYLQKGGQA----YVLRKKP 69

Query: 75 AGKLLESAHAVDREFQV 91
           G LL +AH VDRE+ V
Sbjct: 70 HGPLLPNAHKVDREYHV 86


>sp|B3DMA2|ACD11_RAT Acyl-CoA dehydrogenase family member 11 OS=Rattus norvegicus
          GN=Acad11 PE=1 SV=1
          Length = 779

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)

Query: 14 PAHQLDLDALLRYASVNVPDFPRSP-SKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRK 72
          P H+ D+ +L  Y + ++P F     +  T++Q+  GQSNPTF ++ GS A    YVLRK
Sbjct: 14 PQHKFDIRSLEAYLNQHLPGFGSDHRAVLTVTQYRSGQSNPTFFLQKGSQA----YVLRK 69

Query: 73 KPAGKLLESAHAVDREFQV 91
          KP G LL  AH +DREF+V
Sbjct: 70 KPPGSLLPKAHKIDREFKV 88


>sp|Q709F0|ACD11_HUMAN Acyl-CoA dehydrogenase family member 11 OS=Homo sapiens GN=ACAD11
          PE=1 SV=2
          Length = 780

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)

Query: 14 PAHQLDLDALLRYASVNVPDF-PRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRK 72
          P H+ D  +L  Y + ++  F     +  TI+Q+  G+SNPTF ++ G     + YVLRK
Sbjct: 16 PQHKFDSKSLEAYLNQHLSGFGAEREATLTIAQYRAGKSNPTFYLQKG----FQTYVLRK 71

Query: 73 KPAGKLLESAHAVDREFQV 91
          KP G LL  AH +DREF+V
Sbjct: 72 KPPGSLLPKAHQIDREFKV 90


>sp|Q5R778|ACD11_PONAB Acyl-CoA dehydrogenase family member 11 OS=Pongo abelii GN=ACAD11
          PE=2 SV=2
          Length = 781

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)

Query: 14 PAHQLDLDALLRYASVNVPDF-PRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRK 72
          P H+ D  +L  Y + ++  F     +  TI+Q+  G+SNPTF ++ G     + YVLRK
Sbjct: 16 PQHKFDSKSLEAYLNQHLSGFGAEREATLTIAQYRAGKSNPTFYLQKG----FQTYVLRK 71

Query: 73 KPAGKLLESAHAVDREFQV 91
          KP G LL  AH +DREF+V
Sbjct: 72 KPPGSLLPKAHQIDREFKV 90


>sp|Q8K370|ACD10_MOUSE Acyl-CoA dehydrogenase family member 10 OS=Mus musculus GN=Acad10
           PE=2 SV=1
          Length = 1069

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%), Gaps = 4/47 (8%)

Query: 45  QFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQV 91
           QF HGQSNPT+ + +    A ++ VLRKKP+G LL SAHA++REF++
Sbjct: 290 QFDHGQSNPTYYIRL----ADRQLVLRKKPSGTLLPSAHAIEREFRI 332


>sp|Q6JQN1|ACD10_HUMAN Acyl-CoA dehydrogenase family member 10 OS=Homo sapiens GN=ACAD10
           PE=2 SV=1
          Length = 1059

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 4/47 (8%)

Query: 45  QFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQV 91
           QF HGQSNPT+ + +    A +  VLRKKP G LL SAHA++REF++
Sbjct: 290 QFDHGQSNPTYYIRL----ANRDLVLRKKPPGTLLPSAHAIEREFRI 332


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,069,749
Number of Sequences: 539616
Number of extensions: 1297436
Number of successful extensions: 2338
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2320
Number of HSP's gapped (non-prelim): 8
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)