Query 034450
Match_columns 94
No_of_seqs 105 out of 820
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02876 acyl-CoA dehydrogenas 99.6 1.4E-14 3E-19 120.4 9.7 94 1-94 1-94 (822)
2 COG3173 Predicted aminoglycosi 99.4 6.5E-13 1.4E-17 101.3 7.0 73 15-94 5-77 (321)
3 PLN02756 S-methyl-5-thioribose 98.8 1.1E-08 2.4E-13 80.6 6.6 71 16-93 7-86 (418)
4 TIGR02721 ycfN_thiK thiamine k 97.6 7.9E-05 1.7E-09 53.7 3.7 45 44-93 2-46 (256)
5 cd05156 ChoK_euk Choline Kinas 97.6 0.0001 2.2E-09 54.2 4.2 51 41-93 1-55 (302)
6 cd05153 HomoserineK_II Homoser 97.4 0.0003 6.6E-09 51.3 5.2 60 21-93 2-61 (296)
7 cd05157 ETNK_euk Ethanolamine 97.4 0.00031 6.7E-09 49.6 4.6 50 41-93 1-50 (235)
8 cd05151 ChoK Choline Kinase (C 97.2 0.00064 1.4E-08 45.2 4.5 46 42-93 2-47 (170)
9 cd05154 ACAD10_11_like Acyl-Co 97.2 0.00062 1.4E-08 46.7 4.2 49 42-93 2-50 (223)
10 PF01636 APH: Phosphotransfera 97.0 0.00032 7E-09 48.1 1.7 45 42-93 1-45 (239)
11 TIGR02172 Fb_sc_TIGR02172 Fibr 97.0 0.00076 1.6E-08 48.7 3.5 42 43-93 6-47 (226)
12 PLN02421 phosphotransferase, a 96.8 0.0042 9.1E-08 47.0 6.1 62 30-93 5-68 (330)
13 PTZ00296 choline kinase; Provi 96.7 0.0085 1.8E-07 47.6 7.5 75 17-93 83-164 (442)
14 PLN02236 choline kinase 96.6 0.013 2.8E-07 44.8 7.4 74 18-93 14-91 (344)
15 cd05150 APH Aminoglycoside 3'- 96.4 0.0032 7E-08 44.8 3.2 43 43-93 3-46 (244)
16 TIGR00938 thrB_alt homoserine 96.0 0.024 5.1E-07 42.0 5.8 64 18-93 7-70 (307)
17 PTZ00384 choline kinase; Provi 95.9 0.035 7.5E-07 43.4 6.6 74 18-93 29-107 (383)
18 cd05152 MPH2' Macrolide 2'-Pho 95.8 0.0053 1.2E-07 45.6 1.9 48 41-94 11-61 (276)
19 PRK05231 homoserine kinase; Pr 95.6 0.03 6.6E-07 41.3 5.1 64 16-92 5-68 (319)
20 PRK09550 mtnK methylthioribose 95.5 0.058 1.3E-06 42.6 6.8 74 17-93 6-85 (401)
21 cd05155 APH_ChoK_like_1 Unchar 95.3 0.016 3.4E-07 41.3 2.7 37 47-93 7-43 (235)
22 PRK12396 5-methylribose kinase 94.9 0.12 2.6E-06 41.1 6.9 74 17-93 9-87 (409)
23 cd05120 APH_ChoK_like Aminogly 89.6 0.76 1.7E-05 28.5 4.1 44 43-93 3-46 (155)
24 cd00180 PKc Catalytic domain o 72.8 5 0.00011 25.8 3.1 46 46-93 1-46 (215)
25 PRK10593 hypothetical protein; 71.6 5.1 0.00011 29.8 3.3 46 41-93 17-62 (297)
26 PF03881 Fructosamin_kin: Fruc 70.1 11 0.00024 28.3 4.8 48 20-74 2-49 (288)
27 PRK06148 hypothetical protein; 68.4 36 0.00079 30.0 8.1 51 16-76 9-59 (1013)
28 PRK11768 serine/threonine prot 63.8 54 0.0012 24.6 7.5 67 16-93 9-75 (325)
29 PRK06149 hypothetical protein; 56.4 57 0.0012 28.6 7.1 63 16-92 15-77 (972)
30 TIGR01767 MTRK 5-methylthiorib 45.7 20 0.00044 28.3 2.6 29 45-75 2-30 (370)
31 PF10691 DUF2497: Protein of u 44.9 14 0.00031 22.6 1.4 17 18-34 42-58 (73)
32 COG3827 Uncharacterized protei 34.1 20 0.00043 26.6 0.9 15 20-34 199-213 (231)
33 PF12280 BSMAP: Brain specific 33.9 47 0.001 24.2 2.8 48 17-78 70-117 (207)
34 PRK01723 3-deoxy-D-manno-octul 32.5 66 0.0014 23.1 3.4 42 48-93 42-95 (239)
35 KOG2686 Choline kinase [Cell w 31.9 1.4E+02 0.003 23.7 5.3 55 20-74 20-81 (366)
36 COG2334 Putative homoserine ki 29.4 1.4E+02 0.003 23.0 4.9 50 17-76 10-59 (331)
37 PF14363 AAA_assoc: Domain ass 25.0 62 0.0013 20.3 1.9 15 41-55 28-42 (98)
38 TIGR03843 conserved hypothetic 24.5 1.3E+02 0.0029 22.7 3.8 39 39-78 4-42 (253)
39 cd05073 PTKc_Hck Catalytic dom 24.5 1.2E+02 0.0027 20.8 3.6 46 43-93 11-56 (260)
40 PF04347 FliO: Flagellar biosy 22.9 1E+02 0.0022 18.3 2.5 32 39-74 16-48 (84)
41 PF13082 DUF3931: Protein of u 22.8 1.2E+02 0.0025 17.8 2.6 21 51-71 31-55 (66)
42 cd08219 STKc_Nek3 Catalytic do 22.6 1.1E+02 0.0025 20.8 3.1 49 43-93 5-53 (255)
43 PLN02581 red chlorophyll catab 22.3 2E+02 0.0043 21.9 4.4 40 15-59 80-119 (267)
44 PF11324 DUF3126: Protein of u 21.3 2E+02 0.0043 17.2 3.7 32 20-56 2-34 (63)
45 PF04655 APH_6_hur: Aminoglyco 20.5 1.3E+02 0.0028 22.3 3.1 31 44-77 8-38 (253)
No 1
>PLN02876 acyl-CoA dehydrogenase
Probab=99.57 E-value=1.4e-14 Score=120.37 Aligned_cols=94 Identities=69% Similarity=1.090 Sum_probs=78.0
Q ss_pred CCCccCCCCcCCCCCCcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCC
Q 034450 1 MASRTGDLVSPFQPAHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLE 80 (94)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~ 80 (94)
|+..+.+...+++.++.+|.++|.+||.++++++.++...+.+++|++|+||+||+|+..++....+||||++|++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~ 80 (822)
T PLN02876 1 MAKRTSDLLVPVQSAHRFDEDALLRYAAANVAGFPVPPSTFKVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQ 80 (822)
T ss_pred CCCCccCcCCCCCccccCCHHHHHHHHHHhCCCcCCCccceeEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCc
Confidence 66666677778888889999999999999987764322347899999999999999998654333589999999998888
Q ss_pred CccchhhhhhhhcC
Q 034450 81 SAHAVDREFQVASL 94 (94)
Q Consensus 81 ~ahdl~RE~rvl~a 94 (94)
++|++.||+++|++
T Consensus 81 ~~~~~~rE~~~l~~ 94 (822)
T PLN02876 81 SAHAVEREYQVLRA 94 (822)
T ss_pred cHHHHHHHHHHHHH
Confidence 89999999999863
No 2
>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]
Probab=99.40 E-value=6.5e-13 Score=101.32 Aligned_cols=73 Identities=34% Similarity=0.574 Sum_probs=65.3
Q ss_pred CCcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhcC
Q 034450 15 AHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVASL 94 (94)
Q Consensus 15 ~~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~a 94 (94)
...+|...|.+||..++++.. +...+.++++|+||.||++...+ +.||||+||.+...+++|++.|||++|++
T Consensus 5 ~~~~~~~~l~~~l~~~ip~~~---~~~~v~~~~~G~sn~t~~~~~~~----~~~vlR~P~~~~~~~~~~~~~re~~~i~~ 77 (321)
T COG3173 5 QVALDIAALAAYLRSQIPGYA---GLLIVEEISGGWSNDTFRLGDTG----QKYVLRKPPRGDPVESAHDEKREYRVIAA 77 (321)
T ss_pred cccCCHHHHHHHHHhhCcCcC---CCceeeeccCCcccceEEEecCC----ceEEEecCCccccchhhhHHHhHHHHHHH
Confidence 357999999999999999874 45789999999999999998766 89999988889999999999999999974
No 3
>PLN02756 S-methyl-5-thioribose kinase
Probab=98.81 E-value=1.1e-08 Score=80.56 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=59.6
Q ss_pred CcCCHHHHHHHHhhh------CCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCc---cchh
Q 034450 16 HQLDLDALLRYASVN------VPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESA---HAVD 86 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~------l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~a---hdl~ 86 (94)
..+|.+.|.+||.++ +++. ...++++++++|+||.+|+|+.++ +.+|||++|+.....++ |++.
T Consensus 7 ~~l~~~~l~~yl~~~~~~~~~l~g~---~~~l~~~eiggGn~N~VyrV~~~~----~svVVKqa~p~~r~vga~wpl~~~ 79 (418)
T PLN02756 7 RPLDEKSLVEYIKATPALSSKIGND---LDDLKIKEVGDGNLNFVYIVVSSS----GSFVIKQALPYIRCIGESWPMTKE 79 (418)
T ss_pred ccCCHHHHHHHHHHccchhhhcCCC---CCCceEEEcCCCceeeEEEEEcCC----ccEEEEeCCccccCCCccccCCcc
Confidence 378999999999998 4432 245789999999999999999866 68999999999988877 8999
Q ss_pred hhhhhhc
Q 034450 87 REFQVAS 93 (94)
Q Consensus 87 RE~rvl~ 93 (94)
|++..++
T Consensus 80 R~~~Ea~ 86 (418)
T PLN02756 80 RAYFEAT 86 (418)
T ss_pred HHHHHHH
Confidence 9987654
No 4
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=97.58 E-value=7.9e-05 Score=53.73 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=35.4
Q ss_pred eeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 44 SQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 44 ~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
..+++|.||.+|+++.++ ..||+|.++......+ -+..+|+++++
T Consensus 2 ~~~~~G~tn~~y~~~~~~----~~~vlR~~~~~~~~~~-~~r~~E~~~l~ 46 (256)
T TIGR02721 2 QTLSGGLTNRSWRIEHPG----ISFVWRPQSPVCKALG-VDRQREYQILQ 46 (256)
T ss_pred CcCCCcCcCCeEEEEeCC----ccEEEeeCCccccccc-CcHHHHHHHHH
Confidence 457899999999999776 7899999886543332 36789999886
No 5
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=97.56 E-value=0.0001 Score=54.22 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=38.8
Q ss_pred eeEeeeCCCcccceEEEEeCCC----cceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 41 FTISQFGHGQSNPTFLMEVGSG----AAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~~~~g----~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
+++.++++|.||.+|+|+..++ ...+.+|+|.+-... ....++.+|+++++
T Consensus 1 ~~i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~--~~~~~r~~E~~~~~ 55 (302)
T cd05156 1 LEVSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSV--ELLIDRERELVVFA 55 (302)
T ss_pred CeEEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCC--cceechHHHHHHHH
Confidence 3688999999999999997541 112689999955433 45679999999875
No 6
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=97.43 E-value=0.0003 Score=51.33 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=45.5
Q ss_pred HHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 21 DALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 21 ~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
+.|+++|..-..+ ....+..+.+|.+|.+|++...+ ..+|||..+. .+...+..|+++++
T Consensus 2 ~~l~~~l~~y~~~-----~~~~i~~i~~G~~n~~y~v~~~~----~~~vLr~~~~----~~~~~~~~e~~~l~ 61 (296)
T cd05153 2 EELASFLADYDLG-----ELLSFEGISAGIENTNYFVTTDS----GRYVLTLFEK----VSAEELPFFLALLD 61 (296)
T ss_pred HHHHHHHHHcCCC-----chhheecccCccccceEEEEeCC----CcEEEEEcCC----CChHhccHHHHHHH
Confidence 4577788764321 23579999999999999999877 6899999875 33567888988874
No 7
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=97.38 E-value=0.00031 Score=49.61 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=36.5
Q ss_pred eeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 41 FTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
+.++++++|.||.+|+++.+++ ....||||.+..... ...|..+|+++++
T Consensus 1 ~~i~~l~gG~tN~~~~v~~~~~-~~~~~vlR~~~~~~~--~~~d~~~E~~~~~ 50 (235)
T cd05157 1 ITFKRFTGGITNKLVKVSNKED-NQDAVLVRVYGNKTE--LIIDRERELRIHK 50 (235)
T ss_pred CeEEEcCCcccceEEEEEcCCC-CCCeEEEEEccCCcc--ceecHHHHHHHHH
Confidence 3688999999999999997620 016899998765432 2357788998875
No 8
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=97.22 E-value=0.00064 Score=45.16 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=37.4
Q ss_pred eEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 42 TISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 42 ~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
.++++++|.+|.+|+++..+ +.+|||.++.... ...+..+|+++++
T Consensus 2 ~~~~l~~G~~~~vy~~~~~~----~~~~lK~~~~~~~--~~~~~~~E~~~l~ 47 (170)
T cd05151 2 HISPLKGGMTNKNYRVEVAN----KKYVVRIPGNGTE--LLINRENEAENSK 47 (170)
T ss_pred ceeecCCcccCceEEEEECC----eEEEEEeCCCCcc--cccCHHHHHHHHH
Confidence 57889999999999999886 7899999876542 2447789998875
No 9
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=97.18 E-value=0.00062 Score=46.68 Aligned_cols=49 Identities=49% Similarity=0.823 Sum_probs=39.9
Q ss_pred eEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 42 TISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 42 ~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
.++++++|.+|..|+++..+| ..+|||.+...........+.+|+.+++
T Consensus 2 ~~~~l~~G~~n~~~~v~~~~g---~~~ilK~~~~~~~~~~~~~~~~E~~~~~ 50 (223)
T cd05154 2 EVRQLSGGQSNLTYLLTAGGG---RRLVLRRPPPGALLPSAHDVAREYRVLR 50 (223)
T ss_pred cceecCCCccceEEEEEecCC---cceEEEeCCCcccCcccccHHHHHHHHH
Confidence 467889999999999998653 6899999887665455678999999875
No 10
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=97.03 E-value=0.00032 Score=48.07 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=36.4
Q ss_pred eEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 42 TISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 42 ~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
+|+.+++|.+|.+|+++.++ +.||||..+.. .....+.+|+.+++
T Consensus 1 ~i~~l~~G~~n~~~~v~~~~----~~~vlK~~~~~---~~~~~~~~e~~~~~ 45 (239)
T PF01636_consen 1 HIRPLSGGFSNRVYRVTTDD----GRYVLKFYRPP---DAAERLRREAAVLR 45 (239)
T ss_dssp -EEEEEESSSSEEEEEEETT----SEEEEEEESSH---HHHHHHHHHHHHHH
T ss_pred CCccCCCCCeeeEEEEEECC----cEEEEEEeCCC---CCHHHHHHHHHHHH
Confidence 47889999999999999988 69999998765 34457888888764
No 11
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=97.02 E-value=0.00076 Score=48.67 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=34.0
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
.++|+.|.||.+|.. .+ +.+|||.+|++. +.+++.+|+++|+
T Consensus 6 ~~~i~~G~t~~~y~~--~~----~~~VlR~~~~~~---~~~~i~~E~~~l~ 47 (226)
T TIGR02172 6 WTQTGEGGNGESYTH--KT----GKWMLKLYNPGF---DKETIKREFDASR 47 (226)
T ss_pred heeecCCCCcceeEe--cC----CCEEEEeCCCCC---CHHHHHHHHHHHH
Confidence 478899999999983 33 579999998644 5678999999985
No 12
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=96.79 E-value=0.0042 Score=47.03 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=41.3
Q ss_pred hCCCCCCC-CCceeEeeeCCCcccceEEEEeCCC-cceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 30 NVPDFPRS-PSKFTISQFGHGQSNPTFLMEVGSG-AAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 30 ~l~~~~~~-~~~~~~~~~~~G~SN~T~~l~~~~g-~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
.+|++.+. ..++++++++||.+|.+|+|+..+. .....+|+|.+-.+.. ..-|-.+|+.+++
T Consensus 5 ~~~~w~~~~~~~i~i~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~--~~IdR~~E~~il~ 68 (330)
T PLN02421 5 LFKGWSDLDDSDFSVERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTD--YVIDRERELQAIK 68 (330)
T ss_pred hCCccccCCcCceEEEEeCCcccceEEEEEecCCCCCCceEEEEEecCCcC--eEechHHHHHHHH
Confidence 34555322 3578999999999999999986442 1124899998876542 2235566776654
No 13
>PTZ00296 choline kinase; Provisional
Probab=96.71 E-value=0.0085 Score=47.60 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHhhhCCCCCCC-CCceeEeeeCCCcccceEEEEeCCC-c-----ceeeEEEeCCCCCCCCCCccchhhhh
Q 034450 17 QLDLDALLRYASVNVPDFPRS-PSKFTISQFGHGQSNPTFLMEVGSG-A-----AVKRYVLRKKPAGKLLESAHAVDREF 89 (94)
Q Consensus 17 ~~d~~~L~~wL~~~l~~~~~~-~~~~~~~~~~~G~SN~T~~l~~~~g-~-----~~~~~VLRrpP~g~~~~~ahdl~RE~ 89 (94)
-+|.+.+...+.+.++++... ...+.+.+++||.||..|+|+..++ . ..+.+|+|.+-.+.... -|-.+|.
T Consensus 83 ~~~~~~~~~i~~~~vp~W~~~~~~~I~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~l--IdR~~E~ 160 (442)
T PTZ00296 83 LTDPLYIKKICLEKVPEWRRFTEDDVRVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDEL--YNPISEF 160 (442)
T ss_pred cCChHHHHHHHHHHCCccccCCcccEEEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccce--eCHHHHH
Confidence 355566666666666665321 3468999999999999999987532 1 12689999997765332 2666677
Q ss_pred hhhc
Q 034450 90 QVAS 93 (94)
Q Consensus 90 rvl~ 93 (94)
.+++
T Consensus 161 ~v~~ 164 (442)
T PTZ00296 161 EVYK 164 (442)
T ss_pred HHHH
Confidence 7654
No 14
>PLN02236 choline kinase
Probab=96.57 E-value=0.013 Score=44.75 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCHHHHHHHHhhhCCCCCC--CCCceeEeeeCCCcccceEEEEeCCC--cceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 18 LDLDALLRYASVNVPDFPR--SPSKFTISQFGHGQSNPTFLMEVGSG--AAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~~~--~~~~~~~~~~~~G~SN~T~~l~~~~g--~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
.+...+.+.+.+-.+.+.. ....+++.+++||.||.+|.++..++ ...+.+|+|.+..+.. .--|-.+|+++++
T Consensus 14 ~~~~~~~~~~~~~~~~w~~~~~~~~~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~--~~idR~~E~~~~~ 91 (344)
T PLN02236 14 RIPDELKRILHSLASKWGDVVDDEALQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVE--LFFDRDDEIRTFE 91 (344)
T ss_pred CChHHHHHHHHHhcchhcCCCCcCcEEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCC--eeechHHHHHHHH
Confidence 3445565666655555432 12567899999999999999986432 2236899999987642 2235567888764
No 15
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=96.44 E-value=0.0032 Score=44.76 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=34.8
Q ss_pred EeeeCCCcc-cceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 43 ISQFGHGQS-NPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~S-N~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
..+++.|+| |.+|+++..+ ..+|+|..|... ..++.+|+++|+
T Consensus 3 ~~~~~~g~~~~~v~~~~~~~----~~~~vk~~~~~~----~~~~~~E~~~l~ 46 (244)
T cd05150 3 WERVTEGQSGATVYRLDGKN----PGLYLKIAPSGP----TYELEREAERLR 46 (244)
T ss_pred ceecCCCCCcCeEEEEcCCC----CcEEEEecCCCc----ccchHHHHHHHH
Confidence 467777888 9999998765 689999998764 558899999885
No 16
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=95.95 E-value=0.024 Score=41.99 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=45.1
Q ss_pred CCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 18 LDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
+-.+.|..||... +++ .+..++.+.+|.+|.+|++++++ ..||||.--. ..+...+..|.++++
T Consensus 7 ~~~~~l~~~l~~y--~~~---~~~~i~~~~~G~~n~~y~v~t~~----~~~vLK~~~~---~~~~~~i~~e~~~l~ 70 (307)
T TIGR00938 7 VSDEEMSSFLDGY--DLG---ELLSLKGIAEGVENSNYLLTTDV----GRYILTLYEK---RVKAEELPFFLALTT 70 (307)
T ss_pred CCHHHHHHHHHhc--CCC---CceeccccCCccccceEEEEeCC----CcEEEEEecC---CCCHHHHHHHHHHHH
Confidence 3448899999975 221 24578999999999999999877 5799996322 122346677777653
No 17
>PTZ00384 choline kinase; Provisional
Probab=95.85 E-value=0.035 Score=43.36 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=46.5
Q ss_pred CCHHHHHHHHhhhCCCCCCC-CCceeEeeeCCCcccceEEEEeCCCccee----eEEEeCCCCCCCCCCccchhhhhhhh
Q 034450 18 LDLDALLRYASVNVPDFPRS-PSKFTISQFGHGQSNPTFLMEVGSGAAVK----RYVLRKKPAGKLLESAHAVDREFQVA 92 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~~~~-~~~~~~~~~~~G~SN~T~~l~~~~g~~~~----~~VLRrpP~g~~~~~ahdl~RE~rvl 92 (94)
-+...+-+++.+.++++... ...+++++++||.||..|.++..++. .. +.||+|.. |....-.-|=.+|++|+
T Consensus 29 ~~~~~~~~~~~~~~p~w~~~~~~~i~i~~l~gGLTN~l~~v~~~~~~-~~~~~~k~Vl~R~~-g~~~~l~IdR~~E~~i~ 106 (383)
T PTZ00384 29 HSHSNLKSLCIRHVPFWNNVNPEFIEIKKMNNGITNQVYQATLVDGD-KDRYPIKSVCIKKS-STYNSLVIDNDLQYNIA 106 (383)
T ss_pred ccHHHHHHHHHHHCCccccCCcccEEEEEeCCcccceEEEEEecCCC-CCccccceEEEEec-cCCCceEeccHHHHHHH
Confidence 34456777788888877432 34589999999999999999865421 01 23666653 22222222445588876
Q ss_pred c
Q 034450 93 S 93 (94)
Q Consensus 93 ~ 93 (94)
+
T Consensus 107 ~ 107 (383)
T PTZ00384 107 K 107 (383)
T ss_pred H
Confidence 4
No 18
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=95.82 E-value=0.0053 Score=45.55 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=31.8
Q ss_pred eeEeeeCCCcccceEEEE---eCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhcC
Q 034450 41 FTISQFGHGQSNPTFLME---VGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVASL 94 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~---~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~a 94 (94)
+.+.++.+|+||.+|.+. ..+| +.||+|+||.+.. ...+.||+++|++
T Consensus 11 ~~~~~~~~~~~g~~~~v~~i~~~~g---~~~VlR~p~~~~~---~~~l~rE~~vL~~ 61 (276)
T cd05152 11 LKPETLSLNESGLDFQVVFAKDTDG---VPWVLRIPRRPDV---SERAAAEKRVLAL 61 (276)
T ss_pred cCCCcceecCCcceeEEEEEEcCCC---CeEEEEecCCHHH---HHHHHHHHHHHHH
Confidence 345566666666654444 3322 7999999986443 3468999999863
No 19
>PRK05231 homoserine kinase; Provisional
Probab=95.56 E-value=0.03 Score=41.34 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=43.3
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhh
Q 034450 16 HQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVA 92 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl 92 (94)
+.++.+.|+.||. +.+ .+ ...++..+.+|.+|.+|++++.+ ..+|||.-. . .+...+..|++++
T Consensus 5 t~ls~~~l~~~l~-~y~-~~---~~~~~~~l~~G~~n~~y~v~t~~----g~~vLK~~~-~---~~~~~l~~~~~~l 68 (319)
T PRK05231 5 TDVSDDELAAFLA-PYD-LG---ELLSLKGIAEGIENSNFFLTTTQ----GEYVLTLFE-R---LTAEDLPFFLGLM 68 (319)
T ss_pred ccCCHHHHHHHHH-hcC-Cc---hhhccchhccccccceEEEEeCC----CcEEEEEec-c---CChHHhHHHHHHH
Confidence 3567788999994 442 21 23468889999999999999877 579999643 1 1223455555554
No 20
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=95.52 E-value=0.058 Score=42.57 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCC------Cccchhhhhh
Q 034450 17 QLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLE------SAHAVDREFQ 90 (94)
Q Consensus 17 ~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~------~ahdl~RE~r 90 (94)
.++.+.+-.||...++.++. .+..+++.+++|..|..|+++..+|. +.+||+..|+-.... +-.-...|++
T Consensus 6 ~l~~~~v~~yl~~~~~~~~~-~~~~~~~elggGn~N~VyrV~~~~g~--~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae 82 (401)
T PRK09550 6 TLTEEDAVEYAALKLGLFDP-KALLTAREIGDGNLNLVFRVSDTEGG--KSVIVKQALPYVRVVGESWPLTLDRARIEAE 82 (401)
T ss_pred eCCHhHHHHHHHHhcCCCCC-cccceeeEcCCCceEEEEEEEeCCCC--eEEEEEecCcccccccccccccHHHHHHHHH
Confidence 56778899999766554433 35678999999999999999986531 479999876432211 1123456666
Q ss_pred hhc
Q 034450 91 VAS 93 (94)
Q Consensus 91 vl~ 93 (94)
.|+
T Consensus 83 ~L~ 85 (401)
T PRK09550 83 ALK 85 (401)
T ss_pred HHH
Confidence 654
No 21
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=95.28 E-value=0.016 Score=41.26 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 47 GHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 47 ~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
++|.+|.+|.+. ..+|||.++... +++++.+|+++|+
T Consensus 7 ~gG~~n~vy~~~-------~~~VlR~~~~~~---~~~~~~~E~~~l~ 43 (235)
T cd05155 7 SGGTDNATFRLG-------DDMSVRLPSAAG---YAGQVRKEQRWLP 43 (235)
T ss_pred CCCcccceEEcC-------CceEEEcCCccc---hHHHHHHHHHHHH
Confidence 589999999983 469999887632 4669999999885
No 22
>PRK12396 5-methylribose kinase; Reviewed
Probab=94.92 E-value=0.12 Score=41.07 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=49.1
Q ss_pred cCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCC-----CCCccchhhhhhh
Q 034450 17 QLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKL-----LESAHAVDREFQV 91 (94)
Q Consensus 17 ~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~-----~~~ahdl~RE~rv 91 (94)
.++.+.+..|+.+.++.+.. .+.++++.+++|.+|.+|++....+. +.+|+....+-.. .-+-.....|+.+
T Consensus 9 ~l~~~~v~~yl~~~l~~~~~-~~~~~~~eigdGnlN~VfrV~~~~~~--~svIVKQAlp~vRv~~swpL~~~R~~~E~~a 85 (409)
T PRK12396 9 LMEANDVIVYVKEKLSKFEH-AKGLQCKEIGDGNLNYVFRVWDEQKN--ISVIVKQAGDTARISDEFKLSTNRIRIESDV 85 (409)
T ss_pred eCCHhHHHHHHHHhcCCCCC-cccceeeEcCCCceEEEEEEeeCCCC--ceEEEEeccHhhccCCCCCCChHHHHHHHHH
Confidence 67778899999887655543 35678999999999999999853111 5788755443111 1223345566666
Q ss_pred hc
Q 034450 92 AS 93 (94)
Q Consensus 92 l~ 93 (94)
|+
T Consensus 86 L~ 87 (409)
T PRK12396 86 LQ 87 (409)
T ss_pred HH
Confidence 64
No 23
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=89.57 E-value=0.76 Score=28.55 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=33.4
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
++.++.|.+|.+|.+...+ ..++++....... ..++.+|+.+++
T Consensus 3 ~~~i~~g~~~~v~~~~~~~----~~~~iK~~~~~~~---~~~~~~e~~~~~ 46 (155)
T cd05120 3 IKLLKGGLTNRVYLLGTKD----EDYVLKINPSREK---GADREREVAILQ 46 (155)
T ss_pred ceecccccccceEEEEecC----CeEEEEecCCCCc---hhHHHHHHHHHH
Confidence 4567889999999999876 6899987764332 457888888764
No 24
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=72.81 E-value=5 Score=25.83 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=31.6
Q ss_pred eCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 46 FGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 46 ~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
++.|..+.+|.+...+. ++.++++..+..........+.+|+++++
T Consensus 1 l~~g~~~~v~~~~~~~~--~~~~~~K~~~~~~~~~~~~~~~~e~~~~~ 46 (215)
T cd00180 1 LGEGGFGTVYLARDKKT--GKKVAIKIIKKEDSSSLLEELLREIEILK 46 (215)
T ss_pred CCcCCceEEEEEEecCC--CcEEEEEEeccccchhHHHHHHHHHHHHH
Confidence 36788899999987521 17899998776443222356888888765
No 25
>PRK10593 hypothetical protein; Provisional
Probab=71.62 E-value=5.1 Score=29.85 Aligned_cols=46 Identities=4% Similarity=-0.120 Sum_probs=32.2
Q ss_pred eeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 41 FTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
..++.+++|.+|..|.++.++ ..+|+.-.+.. .....+.+|++.|+
T Consensus 17 ~~~~~i~~G~~~~vy~~~~~~----~~~~~k~~~~~---~~~~~~~~Ea~~L~ 62 (297)
T PRK10593 17 SRVECISEQPYAALWALYDSQ----GNPMPLMARSF---STPGVAQQEAWKLS 62 (297)
T ss_pred heeeecCCccceeEEEEEcCC----CCEEEEEeccc---ccchHHHHHHHHHH
Confidence 368999999999999998766 35554433321 12347888988775
No 26
>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []. Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.
Probab=70.14 E-value=11 Score=28.31 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCC
Q 034450 20 LDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKP 74 (94)
Q Consensus 20 ~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP 74 (94)
+.+++..|.++++.. .....++.++||.-|..|.++.++ +.+.|...+
T Consensus 2 w~~i~~~~~~~~~~~---~~i~~~~~v~GG~i~~a~~~~~~~----~~~FvK~~~ 49 (288)
T PF03881_consen 2 WQAIEQQISEQLGAD---FKITSIEPVSGGDINEAYRLDTDG----GSYFVKVNS 49 (288)
T ss_dssp HHHHHHHHHHHHTS--------EEEEE--SSSSEEEEEETTS-----EEEEEEEE
T ss_pred hHHHHHHHHHHhCCC---CceeeeEecCCCChhheEEEECCC----ccEEEEecC
Confidence 457888888887531 112368999999999999999766 788888766
No 27
>PRK06148 hypothetical protein; Provisional
Probab=68.45 E-value=36 Score=29.97 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=38.4
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCC
Q 034450 16 HQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAG 76 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g 76 (94)
..++.+.++.-+.++.+- . .+++.+ +|..|.+|+|+..+| ..||||...+.
T Consensus 9 p~~s~~~~~~~~~~~ygl-~-----~~~~~L-~s~~d~nf~v~~~~g---~~yVLKi~~~~ 59 (1013)
T PRK06148 9 PEFTTKDAEALLAQHFGI-S-----ATATPL-DGERDLNFRLTTDDG---ADYILKIVNPS 59 (1013)
T ss_pred CCCCHHHHHHHHHHHcCC-c-----eEEeec-CCcCCceEEEEeCCC---CeEEEEEcCCc
Confidence 468888888889988743 1 256676 466799999998764 68999987754
No 28
>PRK11768 serine/threonine protein kinase; Provisional
Probab=63.78 E-value=54 Score=24.58 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=42.8
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 16 HQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
..++.+.+..-+... |+.. .-.+.. -++.-|.+|+|...+| ..||+|...++. .+...+..|.+++.
T Consensus 9 ~~l~p~~~~~a~~~~--g~~~---~~~~~~-l~s~eN~vy~v~~~~~---~~~vlKv~r~~~--~~~~~i~~E~~~l~ 75 (325)
T PRK11768 9 QTLTPDLILDALESL--GLRV---DGRLLA-LNSYENRVYQFGDEDG---RRVVAKFYRPER--WSDAQILEEHAFAL 75 (325)
T ss_pred CCCChHHHHHHHHHc--CCCC---ccceEe-eccccceEEEEecCCC---CEEEEEEcCccc--CCHHHHHHHHHHHH
Confidence 467777777777664 3211 123444 4578999999998653 679999765433 34556777776653
No 29
>PRK06149 hypothetical protein; Provisional
Probab=56.41 E-value=57 Score=28.59 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=44.2
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhh
Q 034450 16 HQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVA 92 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl 92 (94)
..++.+.+++.|.++.+- . .++..+ +|..|.+|+|+..+ ..||||.-.++. +...+.-|..+|
T Consensus 15 p~ls~~~~~~ll~~~ygl-~-----~~~~~L-~s~~d~nf~v~t~~----~~yVLKi~~~~~---~~~~l~~e~~~l 77 (972)
T PRK06149 15 PDVSEAQAERILAEHYGL-S-----GTLTEL-GSQQDRNFRVDSDG----GRFVLKICHAAY---AAVELEAQHAAL 77 (972)
T ss_pred CCCCHHHHHHHHHHhcCC-c-----eEEEec-CCcCcceEEEEecC----CcEEEEeCCccC---ChHHHHHHHHHH
Confidence 468889999999887642 1 246665 57789999999876 589999776532 233566665554
No 30
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=45.74 E-value=20 Score=28.29 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=21.3
Q ss_pred eeCCCcccceEEEEeCCCcceeeEEEeCCCC
Q 034450 45 QFGHGQSNPTFLMEVGSGAAVKRYVLRKKPA 75 (94)
Q Consensus 45 ~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~ 75 (94)
.+++|.+|..|++...+| ++++|+...++
T Consensus 2 EigdGnlN~VfrV~~~~g--~~svIVKQAlp 30 (370)
T TIGR01767 2 EVGDGNLNLVFHVYDQEG--DRAAIVKQALP 30 (370)
T ss_pred cCCCCceEEEEEEEcCCC--CeeEEEEEcCH
Confidence 468999999999986542 14788866554
No 31
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=44.86 E-value=14 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.2
Q ss_pred CCHHHHHHHHhhhCCCC
Q 034450 18 LDLDALLRYASVNVPDF 34 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~ 34 (94)
+-.+-|..||++|||..
T Consensus 42 mLRPmLkeWLD~nLP~l 58 (73)
T PF10691_consen 42 MLRPMLKEWLDENLPGL 58 (73)
T ss_pred HHHHHHHHHHHhccHHH
Confidence 34467999999999863
No 32
>COG3827 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.12 E-value=20 Score=26.60 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhCCCC
Q 034450 20 LDALLRYASVNVPDF 34 (94)
Q Consensus 20 ~~~L~~wL~~~l~~~ 34 (94)
..-|+.||+++||-+
T Consensus 199 RPmLqdWLDkNLPtL 213 (231)
T COG3827 199 RPMLQDWLDKNLPTL 213 (231)
T ss_pred HHHHHHHHHccchHH
Confidence 356999999999743
No 33
>PF12280 BSMAP: Brain specific membrane anchored protein; InterPro: IPR022065 This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.
Probab=33.87 E-value=47 Score=24.22 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCC
Q 034450 17 QLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKL 78 (94)
Q Consensus 17 ~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~ 78 (94)
....+.+..|+.+-+..+ ..|- .|+.||++..++| +-+|++..|....
T Consensus 70 ls~l~lv~~~~~dv~ssA---------qsfI--sStWTfYLQaDdG---KvVVfQsqp~i~~ 117 (207)
T PF12280_consen 70 LSPLDLVRSFCSDVMSSA---------QSFI--SSTWTFYLQADDG---KVVVFQSQPEIEY 117 (207)
T ss_pred cCHHHHHHHHHHHHHHhh---------hhhc--cceeEEEEEcCCC---CEEEEecccccee
Confidence 344556666766654332 2222 6999999999886 7889988886443
No 34
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=32.50 E-value=66 Score=23.08 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=27.9
Q ss_pred CCcccceEEEEeCCCcceeeEEEeCCCCCCC----C--------CCccchhhhhhhhc
Q 034450 48 HGQSNPTFLMEVGSGAAVKRYVLRKKPAGKL----L--------ESAHAVDREFQVAS 93 (94)
Q Consensus 48 ~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~----~--------~~ahdl~RE~rvl~ 93 (94)
.|..|.+|++..++ ..+|||+-=.+.. . .....+.||+++++
T Consensus 42 ~~g~gtv~~v~~~~----~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~ 95 (239)
T PRK01723 42 AKGRGTTWFVQTPG----VNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLA 95 (239)
T ss_pred CCCCccEEEEEeCC----ceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHH
Confidence 57889999999887 7899986533221 1 11224677888764
No 35
>KOG2686 consensus Choline kinase [Cell wall/membrane/envelope biogenesis]
Probab=31.94 E-value=1.4e+02 Score=23.74 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhCCCC-CCC-CCceeEeeeCCCcccceEEEEeCCCc-----ceeeEEEeCCC
Q 034450 20 LDALLRYASVNVPDF-PRS-PSKFTISQFGHGQSNPTFLMEVGSGA-----AVKRYVLRKKP 74 (94)
Q Consensus 20 ~~~L~~wL~~~l~~~-~~~-~~~~~~~~~~~G~SN~T~~l~~~~g~-----~~~~~VLRrpP 74 (94)
..+--.|+.+.+++. .+. ....++..+.+|.||.+|.++.+... .-+.+.||.--
T Consensus 20 ~~~~~~~~~~~l~~~w~~v~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~LlRiyg 81 (366)
T KOG2686|consen 20 LPRAKELCAQYLGGAWRDVINEEQRLEVIPGGGSNLLFVVTSSASTTPIKDEPRKVLLRIYG 81 (366)
T ss_pred cHHHHHHHHHHhhhHHhhhhhhhheeeeccCCCcceEEEEecCcccCCcccccceeEEEEec
Confidence 344555666666543 121 23357899999999999999875431 12468888543
No 36
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=29.37 E-value=1.4e+02 Score=23.01 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCC
Q 034450 17 QLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAG 76 (94)
Q Consensus 17 ~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g 76 (94)
.+..+.+..+|...--+.. .....+.+ ..|.+|+|.+.+ +.+|||--.++
T Consensus 10 ~~~~~~~~~~l~~~~~g~~-----~~~~~l~s-~eN~~f~~~~~~----g~~iLki~~~~ 59 (331)
T COG2334 10 PLTSDEAAAALEAYHYGLD-----GSLRGLNS-EENSNFRVQTED----GRYILKIYRPG 59 (331)
T ss_pred CcChHHHHHHHHhcCcCcc-----cccccccc-ccCceEEEEecC----CCeEEEEecCC
Confidence 3344556666666533321 23455554 899999999988 56799977765
No 37
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=25.04 E-value=62 Score=20.30 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=8.6
Q ss_pred eeEeeeCCCcccceE
Q 034450 41 FTISQFGHGQSNPTF 55 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~ 55 (94)
+.|.++.|+..|.+|
T Consensus 28 i~I~E~~g~~~N~ly 42 (98)
T PF14363_consen 28 IVIPEFDGLSRNELY 42 (98)
T ss_pred EEEEeCCCccccHHH
Confidence 345666666666554
No 38
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=24.55 E-value=1.3e+02 Score=22.70 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=24.7
Q ss_pred CceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCC
Q 034450 39 SKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKL 78 (94)
Q Consensus 39 ~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~ 78 (94)
+.+++...--..||-||+++...+.. ...++=||=.|..
T Consensus 4 Gel~v~gri~~aSN~t~~~~~~~~~~-~~~~VYKPv~gEr 42 (253)
T TIGR03843 4 GELTVLGRLVDASNATLLCEVTLGGV-SARAVYKPVRGER 42 (253)
T ss_pred ceEEEEEEEccccceeEEEEEecCCe-eEEEEECCcCCcc
Confidence 46777666668999999999743311 2344555555553
No 39
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=24.51 E-value=1.2e+02 Score=20.81 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=31.1
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
.+.++.|..+.+|+.....+ ..++++....+. ...+.+.+|.++|+
T Consensus 11 ~~~lg~g~~~~vy~~~~~~~---~~~~iK~~~~~~--~~~~~~~~e~~~l~ 56 (260)
T cd05073 11 EKKLGAGQFGEVWMATYNKH---TKVAVKTMKPGS--MSVEAFLAEANVMK 56 (260)
T ss_pred EeEecCccceEEEEEEecCC---ccEEEEecCCCh--hHHHHHHHHHHHHH
Confidence 57778888889998875432 457887554332 23457788888775
No 40
>PF04347 FliO: Flagellar biosynthesis protein, FliO; InterPro: IPR022781 FliO is an essential component of the flagellum-specific protein export apparatus []. It is an integral membrane protein. Its precise molecular function is unknown. FliO is a short protein found in flagellar biosynthesis operons, and which contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.; GO: 0043064 flagellum organization, 0016021 integral to membrane, 0019861 flagellum
Probab=22.85 E-value=1e+02 Score=18.33 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=21.7
Q ss_pred Ccee-EeeeCCCcccceEEEEeCCCcceeeEEEeCCC
Q 034450 39 SKFT-ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKP 74 (94)
Q Consensus 39 ~~~~-~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP 74 (94)
..+. +.+..-|..+-.++|+.++ +.|+|=.-+
T Consensus 16 ~~i~vv~~~~Lg~~~~l~lV~v~~----~~~Llgvt~ 48 (84)
T PF04347_consen 16 RRIKVVERLPLGPKKSLVLVEVGG----RYLLLGVTD 48 (84)
T ss_pred CcEEEEEEEEECCCCEEEEEEECC----EEEEEEECC
Confidence 3454 5666778888888888877 666664443
No 41
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=22.77 E-value=1.2e+02 Score=17.78 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=12.1
Q ss_pred ccceEEEEe----CCCcceeeEEEe
Q 034450 51 SNPTFLMEV----GSGAAVKRYVLR 71 (94)
Q Consensus 51 SN~T~~l~~----~~g~~~~~~VLR 71 (94)
-|.||.|+. +....++++||-
T Consensus 31 enktyefssfvlcgetpdgrrlvlt 55 (66)
T PF13082_consen 31 ENKTYEFSSFVLCGETPDGRRLVLT 55 (66)
T ss_pred eCceEEEEEEEEEccCCCCcEEEEE
Confidence 478888764 222233677764
No 42
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=22.65 E-value=1.1e+02 Score=20.83 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=29.4
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034450 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~~~~~ahdl~RE~rvl~ 93 (94)
.+.++.|.++.+|.+..... +..++++.-.............+|..+++
T Consensus 5 ~~~lg~g~~g~v~~~~~~~~--~~~~~iK~~~~~~~~~~~~~~~~e~~~l~ 53 (255)
T cd08219 5 LRVVGEGSFGRALLVQHVNS--DQKYAMKEIRLPKSSSAVEDSRKEAVLLA 53 (255)
T ss_pred EEEeeccCCeEEEEEEEcCC--CceEEEEEEEcCcchHHHHHHHHHHHHHH
Confidence 46677788889999876321 16778775432222223346667776654
No 43
>PLN02581 red chlorophyll catabolite reductase
Probab=22.34 E-value=2e+02 Score=21.95 Aligned_cols=40 Identities=8% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEe
Q 034450 15 AHQLDLDALLRYASVNVPDFPRSPSKFTISQFGHGQSNPTFLMEV 59 (94)
Q Consensus 15 ~~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~ 59 (94)
+..+|...|..||...... ..+-++-+.++-+|..+.++.
T Consensus 80 ggalnItsL~~~L~~stda-----Phf~~Eliq~sptslv~~LDl 119 (267)
T PLN02581 80 GGALNITSLSAFLNPSTDA-----PHFLVELIQSSPTSLVLILDL 119 (267)
T ss_pred CccccHHHHHhHhccCCCC-----CceeeeeeccCCceEEEEecc
Confidence 4566777777777665421 234455544555666666665
No 44
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=21.31 E-value=2e+02 Score=17.17 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhCCCCCCCCCceeEeee-CCCcccceEE
Q 034450 20 LDALLRYASVNVPDFPRSPSKFTISQF-GHGQSNPTFL 56 (94)
Q Consensus 20 ~~~L~~wL~~~l~~~~~~~~~~~~~~~-~~G~SN~T~~ 56 (94)
+.+|++||++.+.. ..+++.+- ..+.|-+.|.
T Consensus 2 i~klq~yLr~~f~n-----~~i~v~~rpk~~dsaEV~~ 34 (63)
T PF11324_consen 2 IKKLQAYLRRTFGN-----PGITVKARPKKDDSAEVYI 34 (63)
T ss_pred hHHHHHHHHHHhCC-----CceEEEcCCCCCCceEEEe
Confidence 47899999998743 23555433 3356666654
No 45
>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []. Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process
Probab=20.50 E-value=1.3e+02 Score=22.28 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=25.1
Q ss_pred eeeCCCcccceEEEEeCCCcceeeEEEeCCCCCC
Q 034450 44 SQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGK 77 (94)
Q Consensus 44 ~~~~~G~SN~T~~l~~~~g~~~~~~VLRrpP~g~ 77 (94)
.++.+|+++.++.+...+| ...||+..++..
T Consensus 8 ~~~~~g~~s~V~pv~~~dG---~~avLKl~~p~~ 38 (253)
T PF04655_consen 8 GPPAHGSSSLVVPVRRADG---TPAVLKLAPPHA 38 (253)
T ss_pred CCCCCCcceEEEEEEcCCC---CeEEEEecCCcc
Confidence 3567899999999988665 789999888655
Done!