BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034451
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 25 LNWVWLRPKK----LEKFLRQQGLKGNSYRLLFGDL 56
L+ +W+ K+ L KFL L GN RLLFG +
Sbjct: 47 LDTLWIPNKEYFWGLSKFLGTHWLMGNILRLLFGSM 82
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 25 LNWVWLRPKK----LEKFLRQQGLKGNSYRLLFGDL 56
L+ +W+ K+ L KFL L GN RLLFG +
Sbjct: 47 LDTLWIPNKEYFWGLSKFLGTHWLMGNILRLLFGSM 82
>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 33 KKLEKFLRQQGLKGNSYRLLFGDLKENSI 61
KK EK+ RQ+G++ YRL DL E ++
Sbjct: 405 KKFEKWARQEGIE--CYRLYDADLPEYNV 431
>pdb|2UYR|X Chain X, Crystal Structure Of Bacillus Cereus Sphingomyelinase
Mutant :n57a
Length = 306
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 33 KKLEKFLRQQGLKGNSYRLLFGDLKENSI 61
K+++ F++ + + N Y L+ GD+ N I
Sbjct: 173 KEIQDFIKNKNIPNNEYVLIGGDMNVNKI 201
>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
Length = 702
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 33 KKLEKFLRQQGLKGNSYRLLFGDLKENSIEL 63
KK EK+ RQ+G++ YRL DL E ++ +
Sbjct: 404 KKFEKWARQEGIE--CYRLYDADLPEYNVAV 432
>pdb|2DDR|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDR|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDR|C Chain C, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDR|D Chain D, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
pdb|2DDS|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDS|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDS|C Chain C, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDS|D Chain D, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
pdb|2DDT|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Magnesium Ion
pdb|2DDT|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Magnesium Ion
Length = 306
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 33 KKLEKFLRQQGLKGNSYRLLFGDLKENSI 61
K+++ F++ + + N Y L+ GD+ N I
Sbjct: 173 KEIQDFIKNKNIPNNEYVLIGGDMNVNKI 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,835,027
Number of Sequences: 62578
Number of extensions: 99650
Number of successful extensions: 240
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 9
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)