Query 034451
Match_columns 94
No_of_seqs 114 out of 433
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02290 cytokinin trans-hydro 99.3 1.5E-11 3.2E-16 96.7 11.6 78 17-94 17-95 (516)
2 PTZ00404 cytochrome P450; Prov 97.4 0.00028 6E-09 55.1 4.6 47 30-94 17-63 (482)
3 KOG0157 Cytochrome P450 CYP4/C 96.9 0.0037 8.1E-08 49.9 6.7 39 40-93 33-71 (497)
4 KOG0158 Cytochrome P450 CYP3/C 96.5 0.0054 1.2E-07 49.8 5.4 29 34-62 23-51 (499)
5 PLN02302 ent-kaurenoic acid ox 96.1 0.024 5.3E-07 44.1 6.7 37 45-94 45-81 (490)
6 PLN02183 ferulate 5-hydroxylas 95.7 0.019 4.1E-07 45.5 4.7 46 26-94 25-70 (516)
7 KOG0156 Cytochrome P450 CYP2 s 95.4 0.023 5E-07 45.9 4.3 34 44-94 28-61 (489)
8 PLN00168 Cytochrome P450; Prov 95.2 0.027 5.9E-07 44.7 4.0 53 27-94 20-72 (519)
9 PLN03234 cytochrome P450 83B1; 94.9 0.042 9.2E-07 43.1 4.2 35 43-94 29-63 (499)
10 COG3898 Uncharacterized membra 94.8 0.1 2.2E-06 42.2 6.2 50 18-67 55-111 (531)
11 PLN02687 flavonoid 3'-monooxyg 94.4 0.044 9.6E-07 43.5 3.4 34 43-94 35-68 (517)
12 PLN02738 carotene beta-ring hy 94.3 0.044 9.5E-07 45.3 3.2 21 31-51 104-124 (633)
13 PLN03112 cytochrome P450 famil 93.7 0.073 1.6E-06 42.0 3.3 33 44-94 34-66 (514)
14 PLN02394 trans-cinnamate 4-mon 93.4 0.14 3E-06 40.2 4.4 35 43-94 31-65 (503)
15 PLN02966 cytochrome P450 83A1 93.1 0.063 1.4E-06 42.4 2.1 35 43-94 30-64 (502)
16 PLN02774 brassinosteroid-6-oxi 92.8 0.13 2.8E-06 40.2 3.5 41 36-94 24-65 (463)
17 PLN02196 abscisic acid 8'-hydr 92.8 0.2 4.4E-06 39.2 4.5 36 42-94 35-70 (463)
18 PLN02169 fatty acid (omega-1)- 90.6 1.2 2.5E-05 35.5 6.8 23 38-60 27-49 (500)
19 PLN02971 tryptophan N-hydroxyl 90.5 0.48 1E-05 38.0 4.5 34 44-93 59-92 (543)
20 PF07219 HemY_N: HemY protein 90.2 1.3 2.9E-05 28.5 5.7 52 15-66 27-85 (108)
21 PLN03195 fatty acid omega-hydr 88.3 1.5 3.3E-05 34.6 5.8 21 39-59 27-47 (516)
22 PF00067 p450: Cytochrome P450 86.8 0.59 1.3E-05 34.5 2.5 34 45-94 2-35 (463)
23 PLN02500 cytochrome P450 90B1 86.3 2.4 5.3E-05 33.3 5.9 38 44-94 40-77 (490)
24 PLN02655 ent-kaurene oxidase 82.1 1.1 2.4E-05 35.1 2.3 33 45-94 2-34 (466)
25 PLN00110 flavonoid 3',5'-hydro 79.1 5.3 0.00012 31.7 5.3 43 34-94 23-65 (504)
26 PLN03141 3-epi-6-deoxocathaste 76.0 2.7 5.8E-05 32.7 2.7 37 45-94 10-46 (452)
27 PRK10747 putative protoheme IX 74.2 9.5 0.0002 29.5 5.4 49 17-65 54-109 (398)
28 TIGR00540 hemY_coli hemY prote 74.0 11 0.00024 29.2 5.7 49 17-65 54-109 (409)
29 PLN02987 Cytochrome P450, fami 73.2 9.4 0.0002 30.2 5.2 37 45-94 33-69 (472)
30 PF10281 Ish1: Putative stress 60.9 23 0.0005 18.6 4.4 29 31-62 5-33 (38)
31 PF15643 Tox-PL-2: Papain fold 48.0 16 0.00034 24.0 1.9 24 32-55 25-48 (100)
32 TIGR02920 acc_sec_Y2 accessory 44.0 63 0.0014 25.6 5.1 29 22-50 289-317 (395)
33 PF09336 Vps4_C: Vps4 C termin 41.5 16 0.00035 21.5 1.2 11 83-93 52-62 (62)
34 PF13167 GTP-bdg_N: GTP-bindin 40.7 29 0.00062 22.3 2.3 46 45-93 33-80 (95)
35 PRK12417 secY preprotein trans 38.3 1E+02 0.0022 24.5 5.6 25 21-45 295-319 (404)
36 PLN03018 homomethionine N-hydr 38.0 60 0.0013 26.2 4.3 36 23-59 22-57 (534)
37 PF03115 Astro_capsid: Astrovi 35.9 12 0.00026 32.5 0.0 18 35-52 65-82 (787)
38 COG0011 Uncharacterized conser 35.0 66 0.0014 20.9 3.4 36 34-69 25-63 (100)
39 PF15187 Augurin: Oesophageal 34.1 56 0.0012 21.7 2.9 52 34-92 2-57 (114)
40 PF13276 HTH_21: HTH-like doma 33.6 46 0.001 18.7 2.2 20 30-49 38-57 (60)
41 cd06333 PBP1_ABC-type_HAAT_lik 32.5 1.3E+02 0.0028 21.7 4.9 61 34-94 203-275 (312)
42 PF06716 DUF1201: Protein of u 31.3 1.1E+02 0.0023 17.6 4.8 30 1-30 1-30 (54)
43 smart00540 LEM in nuclear memb 30.6 45 0.00098 18.5 1.8 14 32-45 8-21 (44)
44 PF15050 SCIMP: SCIMP protein 29.2 1.8E+02 0.0038 19.9 4.7 26 37-62 32-57 (133)
45 PF04995 CcmD: Heme exporter p 28.9 1.1E+02 0.0023 16.7 4.6 19 24-42 21-39 (46)
46 PF13072 DUF3936: Protein of u 28.1 55 0.0012 17.8 1.8 20 46-65 6-25 (38)
47 PRK08476 F0F1 ATP synthase sub 28.1 1.1E+02 0.0024 20.5 3.7 13 22-34 21-33 (141)
48 PF04799 Fzo_mitofusin: fzo-li 27.9 20 0.00043 25.6 0.0 24 22-45 59-82 (171)
49 PF13986 DUF4224: Domain of un 27.6 55 0.0012 18.2 1.8 22 30-51 15-39 (47)
50 PF02684 LpxB: Lipid-A-disacch 27.4 87 0.0019 24.7 3.5 49 33-93 96-152 (373)
51 PRK11677 hypothetical protein; 26.6 1.7E+02 0.0038 19.9 4.4 23 19-41 18-40 (134)
52 PF00558 Vpu: Vpu protein; In 26.4 1.2E+02 0.0025 19.1 3.3 11 19-29 20-30 (81)
53 PF02631 RecX: RecX family; I 26.2 50 0.0011 21.2 1.7 17 30-46 43-59 (121)
54 PF05552 TM_helix: Conserved T 25.4 1.3E+02 0.0028 16.6 5.0 27 13-45 23-49 (53)
55 COG2454 Uncharacterized conser 25.2 53 0.0012 24.2 1.8 17 33-49 147-163 (211)
56 PF12994 DUF3878: Domain of un 24.4 66 0.0014 24.9 2.3 26 31-56 249-274 (299)
57 PF11823 DUF3343: Protein of u 24.2 66 0.0014 19.0 1.8 18 33-50 15-35 (73)
58 TIGR00106 uncharacterized prot 23.3 1.8E+02 0.0039 18.5 3.9 33 35-67 24-59 (97)
59 PTZ00219 Sec61 alpha subunit; 22.8 2.7E+02 0.0058 22.7 5.6 27 21-47 372-403 (474)
60 COG4578 GutM Glucitol operon a 22.7 2.6E+02 0.0056 19.1 5.7 18 29-46 30-47 (128)
61 smart00843 Ftsk_gamma This dom 22.6 1.4E+02 0.0031 17.7 3.0 29 20-48 24-52 (63)
62 TIGR02876 spore_yqfD sporulati 22.4 3.2E+02 0.0068 21.5 5.8 31 30-62 116-147 (382)
63 cd00153 RalGDS_RA Ubiquitin do 22.0 98 0.0021 19.8 2.4 20 31-50 29-48 (87)
64 PRK01021 lpxB lipid-A-disaccha 21.2 1.3E+02 0.0029 25.5 3.6 49 33-93 324-380 (608)
65 COG3771 Predicted membrane pro 21.1 2.5E+02 0.0053 18.2 5.1 15 30-44 69-83 (97)
66 PRK14471 F0F1 ATP synthase sub 21.0 1.6E+02 0.0034 19.9 3.5 17 23-41 23-39 (164)
67 PF08733 PalH: PalH/RIM21; In 21.0 2.2E+02 0.0048 22.2 4.6 16 31-46 317-332 (348)
No 1
>PLN02290 cytokinin trans-hydroxylase
Probab=99.35 E-value=1.5e-11 Score=96.70 Aligned_cols=78 Identities=22% Similarity=0.478 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCC-CCCCcccccchHHHHHHHhhCC
Q 034451 17 VLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLS-LDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 17 ~~~~~~~~~~~~w~~P~rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~-~shdi~prv~P~~~~w~k~YGk 94 (94)
+.-++++.++.+.+.|+|++++++++|++||++.+++||+.++.....++..++++ ..+|+..+..+++.+|.++||+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~ 95 (516)
T PLN02290 17 LLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGK 95 (516)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCC
Confidence 34466788899999999999999999999999999999999997765565566665 4677777788899999999995
No 2
>PTZ00404 cytochrome P450; Provisional
Probab=97.37 E-value=0.00028 Score=55.14 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=34.6
Q ss_pred hchHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 30 LRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 30 ~~P~rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
+.+.+..+++++++|+||++.+++||..++.+ ...-++++|.++||+
T Consensus 17 ~~~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~------------------~~~~~~~~~~~~yG~ 63 (482)
T PTZ00404 17 HNAYKKYKKIHKNELKGPIPIPILGNLHQLGN------------------LPHRDLTKMSKKYGG 63 (482)
T ss_pred HHHHHHhhhccCCCCCCCCCCCeeccHhhhcc------------------cHHHHHHHHHHHhCC
Confidence 33555556799999999999999999866632 112367888999984
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=96.88 E-value=0.0037 Score=49.89 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=30.7
Q ss_pred HHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhC
Q 034451 40 RQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYG 93 (94)
Q Consensus 40 r~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YG 93 (94)
+.++.+||++.+++||..|+.++. .....++.++..+||
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~---------------~~~~~~~~~~~~~~~ 71 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPL---------------EEILDFVTELLSRYG 71 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcch---------------hHHHHHHHHHHHHcC
Confidence 788999999999999999987631 334457777777776
No 4
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.53 E-value=0.0054 Score=49.84 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCHHHHHHH
Q 034451 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIE 62 (94)
Q Consensus 34 rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~ 62 (94)
+...+|++.||+||+|.+++||+..+.+.
T Consensus 23 ~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~ 51 (499)
T KOG0158|consen 23 WTYSYWRRRGIPGPKPLPFLGNLPGMLKR 51 (499)
T ss_pred hhhhhhccCCCCCCCCCCcEecHHHHHhc
Confidence 45568889999999999999999998773
No 5
>PLN02302 ent-kaurenoic acid oxidase
Probab=96.08 E-value=0.024 Score=44.07 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 45 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
+||++-+++||+.++..... + .....++.+|.++||+
T Consensus 45 Pgp~~~PilG~l~~~~~~~~----------~---~~~~~~~~~~~~kyG~ 81 (490)
T PLN02302 45 PGDLGWPVIGNMWSFLRAFK----------S---SNPDSFIASFISRYGR 81 (490)
T ss_pred CCCCCCCccccHHHHHHhcc----------c---CCcHHHHHHHHHHhCC
Confidence 67888899999877754100 0 1112467899999984
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=95.69 E-value=0.019 Score=45.54 Aligned_cols=46 Identities=15% Similarity=0.043 Sum_probs=31.6
Q ss_pred HHHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 26 NWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 26 ~~~w~~P~rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
-.+|.++.|- .+-++||++.+++||+.++.+ + ...++.+|.++||+
T Consensus 25 ~~~~~~~~~~-----~~~ppgp~~~Pl~G~l~~~~~--------------~----~~~~~~~~~~~yG~ 70 (516)
T PLN02183 25 LGLISRLRRR-----LPYPPGPKGLPIIGNMLMMDQ--------------L----THRGLANLAKQYGG 70 (516)
T ss_pred HHHHhhccCC-----CCCCcCCCCCCeeccHHhcCC--------------c----chHHHHHHHHHhCC
Confidence 3446666552 356889999999999865521 1 12468999999995
No 7
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.40 E-value=0.023 Score=45.88 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=26.1
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 44 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
-+||++-+++||+.++.. .| ..-.|++|+++||+
T Consensus 28 PPGP~~lPiIGnl~~l~~----------------~~-~h~~~~~ls~~yGp 61 (489)
T KOG0156|consen 28 PPGPPPLPIIGNLHQLGS----------------LP-PHRSFRKLSKKYGP 61 (489)
T ss_pred CcCCCCCCccccHHHcCC----------------Cc-hhHHHHHHHHHhCC
Confidence 469999999999977754 11 12378999999995
No 8
>PLN00168 Cytochrome P450; Provisional
Probab=95.20 E-value=0.027 Score=44.67 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 27 WVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 27 ~~w~~P~rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
.+|+.|.+..-..+.+=.+||++.+++||..++.. + .+....++.+|.++||+
T Consensus 20 ~~~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~--------------~-~~~~~~~~~~~~~~yG~ 72 (519)
T PLN00168 20 LLLGKHGGRGGKKGRRLPPGPPAVPLLGSLVWLTN--------------S-SADVEPLLRRLIARYGP 72 (519)
T ss_pred HhhhhhhccCCCCCCCCCcCCCCCcccccHHhhcc--------------c-cccHHHHHHHHHHHhCC
Confidence 44566666655555555679999999999865521 0 11233578999999984
No 9
>PLN03234 cytochrome P450 83B1; Provisional
Probab=94.86 E-value=0.042 Score=43.11 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.5
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 43 GI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
.++||++.+++||+.++.. +| ...++.+|.++||+
T Consensus 29 ~pPgp~~~P~iG~~~~~~~-------------~~----~~~~~~~~~~~yG~ 63 (499)
T PLN03234 29 LPPGPKGLPIIGNLHQMEK-------------FN----PQHFLFRLSKLYGP 63 (499)
T ss_pred CCcCCCCCCeeccHHhcCC-------------CC----ccHHHHHHHHHcCC
Confidence 4899999999999866521 11 12477889999984
No 10
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.82 E-value=0.1 Score=42.22 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhchHHHHHHHH----HcCCCCCCCcCC---CCCHHHHHHHHHHhh
Q 034451 18 LTWAWRVLNWVWLRPKKLEKFLR----QQGLKGNSYRLL---FGDLKENSIELKEAK 67 (94)
Q Consensus 18 ~~~~~~~~~~~w~~P~rl~~~lr----~QGI~GP~~~~l---~Gn~~e~~~~~~~a~ 67 (94)
+..+|.+++++|-.|++++|++| .||++--+--++ -||-.+-.+|.+++.
T Consensus 55 v~llwwlv~~iw~sP~t~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~ 111 (531)
T COG3898 55 VLLLWWLVRSIWESPYTARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARAS 111 (531)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHH
Confidence 34678999999999999999986 468876666666 489988888876654
No 11
>PLN02687 flavonoid 3'-monooxygenase
Probab=94.40 E-value=0.044 Score=43.46 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=24.2
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 43 GI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
..+||++-+++||..++.+ + ...++.+|.++||+
T Consensus 35 ~pPgp~~~P~iG~~~~~~~--------------~----~~~~~~~~~~~yG~ 68 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQLGP--------------K----PHHTMAALAKTYGP 68 (517)
T ss_pred CCccCCCCCccccHHhcCC--------------c----hhHHHHHHHHHhCC
Confidence 4568888899999865521 1 22477899999984
No 12
>PLN02738 carotene beta-ring hydroxylase
Probab=94.30 E-value=0.044 Score=45.35 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.2
Q ss_pred chHHHHHHHHHcCCCCCCCcC
Q 034451 31 RPKKLEKFLRQQGLKGNSYRL 51 (94)
Q Consensus 31 ~P~rl~~~lr~QGI~GP~~~~ 51 (94)
.|..++..|+++||+||+...
T Consensus 104 ~~~~~~~~~~~~~~pgp~laa 124 (633)
T PLN02738 104 FPATLRNGLAKLGPPGELLAF 124 (633)
T ss_pred chHHHHhhhhhCCCCCchHHH
Confidence 589999999999999996543
No 13
>PLN03112 cytochrome P450 family protein; Provisional
Probab=93.65 E-value=0.073 Score=42.00 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 44 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
.+||++.+++||+.++.+ + + .-++.+|.++||+
T Consensus 34 ppgp~~~pl~G~~~~~~~--------------~--~--~~~~~~~~~kyG~ 66 (514)
T PLN03112 34 PPGPPRWPIVGNLLQLGP--------------L--P--HRDLASLCKKYGP 66 (514)
T ss_pred ccCCCCCCeeeeHHhcCC--------------c--h--HHHHHHHHHHhCC
Confidence 579999999999865521 0 1 1356888888884
No 14
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=93.37 E-value=0.14 Score=40.25 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=25.2
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 43 GI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
-++||++..++||..++.+ | .....+++|.++||+
T Consensus 31 ~pPgp~~~p~~g~l~~~~~--------------~---~~~~~~~~~~~~yG~ 65 (503)
T PLN02394 31 LPPGPAAVPIFGNWLQVGD--------------D---LNHRNLAEMAKKYGD 65 (503)
T ss_pred CCcCCCCCCeeeeHHhcCC--------------C---chhHHHHHHHHHhCC
Confidence 3679999999999866522 1 012477899999984
No 15
>PLN02966 cytochrome P450 83A1
Probab=93.09 E-value=0.063 Score=42.39 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 43 GI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
=++||++.+++||+.++.. .....++.+|.++||+
T Consensus 30 ~ppgp~~~p~~G~l~~l~~-----------------~~~~~~~~~~~~~yG~ 64 (502)
T PLN02966 30 LPPGPSPLPVIGNLLQLQK-----------------LNPQRFFAGWAKKYGP 64 (502)
T ss_pred CCcCCCCCCeeccHHhcCC-----------------CChhHHHHHHHHHhCC
Confidence 3789999999999865521 1123577999999995
No 16
>PLN02774 brassinosteroid-6-oxidase
Probab=92.82 E-value=0.13 Score=40.20 Aligned_cols=41 Identities=27% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHHHcCC-CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 36 EKFLRQQGL-KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 36 ~~~lr~QGI-~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
++++++.|. +||++-+++||..++.+ | + .-++++|.++||+
T Consensus 24 ~~~~~r~~~ppgp~~~P~~G~~~~~~~--------------~--~--~~~~~~~~~~yG~ 65 (463)
T PLN02774 24 EVRYSKKGLPPGTMGWPLFGETTEFLK--------------Q--G--PDFMKNQRLRYGS 65 (463)
T ss_pred hhccCCCCCCCCCCCCCchhhHHHHHH--------------h--h--HHHHHHHHHHhcc
Confidence 344566687 48888899999877643 1 1 1267888899985
No 17
>PLN02196 abscisic acid 8'-hydroxylase
Probab=92.77 E-value=0.2 Score=39.19 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=23.2
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 42 QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
.+.+||++.+++||..++.+ .| | .-++.+|.++||+
T Consensus 35 ~~Ppgp~~~P~iG~~~~~~~-------------~~--~--~~~~~~~~~~yG~ 70 (463)
T PLN02196 35 PLPPGTMGWPYVGETFQLYS-------------QD--P--NVFFASKQKRYGS 70 (463)
T ss_pred CCCCCCCCCCccchHHHHHh-------------cC--H--HHHHHHHHHHhhh
Confidence 35556666788999876532 11 1 1357889999984
No 18
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=90.65 E-value=1.2 Score=35.51 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=20.0
Q ss_pred HHHHcCCCCCCCcCCCCCHHHHH
Q 034451 38 FLRQQGLKGNSYRLLFGDLKENS 60 (94)
Q Consensus 38 ~lr~QGI~GP~~~~l~Gn~~e~~ 60 (94)
.||+.|++||++.+++||+.++.
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~ 49 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGML 49 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHH
Confidence 56778999999999999997764
No 19
>PLN02971 tryptophan N-hydroxylase
Probab=90.49 E-value=0.48 Score=37.99 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=24.5
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhC
Q 034451 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYG 93 (94)
Q Consensus 44 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YG 93 (94)
.+||++.+++||+.++.+ | .+ ...++++|.++||
T Consensus 59 PPGP~~lPiiGnl~~l~~--------------~-~~-~~~~l~~~~~~yg 92 (543)
T PLN02971 59 PPGPTGFPIVGMIPAMLK--------------N-RP-VFRWLHSLMKELN 92 (543)
T ss_pred CcCCCCCCcccchHHhcc--------------C-Cc-HhHHHHHHHHHhC
Confidence 569999999999876632 1 11 2246789999998
No 20
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=90.24 E-value=1.3 Score=28.51 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHcCCCCC-------CCcCCCCCHHHHHHHHHHh
Q 034451 15 VTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGN-------SYRLLFGDLKENSIELKEA 66 (94)
Q Consensus 15 ~~~~~~~~~~~~~~w~~P~rl~~~lr~QGI~GP-------~~~~l~Gn~~e~~~~~~~a 66 (94)
+++++.+++++..+|--|.++.+.++++.-+-- =-.+.-||..+-.+...++
T Consensus 27 ~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a 85 (108)
T PF07219_consen 27 FVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKA 85 (108)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344556789999999999988765544432110 0124568988877765554
No 21
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=88.28 E-value=1.5 Score=34.62 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=16.6
Q ss_pred HHHcCCCCCCCcCCCCCHHHH
Q 034451 39 LRQQGLKGNSYRLLFGDLKEN 59 (94)
Q Consensus 39 lr~QGI~GP~~~~l~Gn~~e~ 59 (94)
|++++++||++-+++||..++
T Consensus 27 ~~~~~~pgp~~~p~~G~~~~~ 47 (516)
T PLN03195 27 WSQRNRKGPKSWPIIGAALEQ 47 (516)
T ss_pred hhccccCCCCCCCeecchHHH
Confidence 445679999999999997544
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=86.84 E-value=0.59 Score=34.51 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 45 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
+||++-+++||..++.+ .....-++++|.++||+
T Consensus 2 pgp~~~p~~G~~~~~~~----------------~~~~~~~~~~~~~kyG~ 35 (463)
T PF00067_consen 2 PGPPPLPILGNLLQFRR----------------KGNPHEFFRELHKKYGP 35 (463)
T ss_dssp SCSSSBTTTBTHHHHHT----------------THHHHHHHHHHHHHHTS
T ss_pred cCCCCcCceeEHHHhcC----------------CCcHHHHHHHHHHHhCC
Confidence 58999999999988863 01122367999999995
No 23
>PLN02500 cytochrome P450 90B1
Probab=86.26 E-value=2.4 Score=33.28 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 44 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
.+||++.+++||..++.+. ..|+ ...-++.+|.++||+
T Consensus 40 PPgp~~~PiiGn~~~~~~~----------~~~~---~~~~~~~~~~~~yG~ 77 (490)
T PLN02500 40 PPGNMGWPFLGETIGYLKP----------YSAT---SIGEFMEQHISRYGK 77 (490)
T ss_pred CCCCcCCCchhhHHHHHhh----------cccC---ChHHHHHHHHHHhcc
Confidence 3499999999998554320 0011 112356888888984
No 24
>PLN02655 ent-kaurene oxidase
Probab=82.08 E-value=1.1 Score=35.05 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=24.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 45 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
+||++.+++||+.++.. + ....++.+|.++||+
T Consensus 2 pgp~~lP~iG~l~~~~~--------------~---~~~~~~~~~~~~yG~ 34 (466)
T PLN02655 2 PAVPGLPVIGNLLQLKE--------------K---KPHRTFTKWSEIYGP 34 (466)
T ss_pred cCCCCCCccccHHHcCC--------------C---chhHHHHHHHHHhCC
Confidence 69999999999876632 0 112478999999994
No 25
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=79.08 E-value=5.3 Score=31.73 Aligned_cols=43 Identities=21% Similarity=0.078 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 34 rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
++..+-.++-.+||++.+++||...+.+ + + .-++.+|.++||+
T Consensus 23 ~~~~~~~~~~pPgp~~~Pl~G~l~~~~~--------------~--~--~~~~~~~~~~yG~ 65 (504)
T PLN00110 23 SLLPKPSRKLPPGPRGWPLLGALPLLGN--------------M--P--HVALAKMAKRYGP 65 (504)
T ss_pred HHhhcccCCCcccCCCCCeeechhhcCC--------------c--h--HHHHHHHHHHhCC
Confidence 3333444445779998999999755421 1 1 1367899999994
No 26
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=76.03 E-value=2.7 Score=32.71 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=23.8
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 45 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
+||++-+++||..++..- + ..+| ...++++|.++||+
T Consensus 10 pg~~~~P~iG~~~~l~~~---~------~~~~----~~~~~~~~~~~yG~ 46 (452)
T PLN03141 10 KGSLGWPVIGETLDFISC---A------YSSR----PESFMDKRRSLYGK 46 (452)
T ss_pred CCCCCCCchhhHHHHHhh---c------ccCC----hHHHHHHHHHHhhh
Confidence 488888899998776430 0 0012 12367899999994
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=74.18 E-value=9.5 Score=29.52 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcCC-CCCC------CcCCCCCHHHHHHHHHH
Q 034451 17 VLTWAWRVLNWVWLRPKKLEKFLRQQGL-KGNS------YRLLFGDLKENSIELKE 65 (94)
Q Consensus 17 ~~~~~~~~~~~~w~~P~rl~~~lr~QGI-~GP~------~~~l~Gn~~e~~~~~~~ 65 (94)
+++++++++..+|-.|.++++.+++..- +|-. -.+.-||..+..++...
T Consensus 54 ~~~~~~~~~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~ 109 (398)
T PRK10747 54 VLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMTR 109 (398)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3346678888889888887766554322 1110 11334888876665443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=73.97 E-value=11 Score=29.16 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcCCC-CC------CCcCCCCCHHHHHHHHHH
Q 034451 17 VLTWAWRVLNWVWLRPKKLEKFLRQQGLK-GN------SYRLLFGDLKENSIELKE 65 (94)
Q Consensus 17 ~~~~~~~~~~~~w~~P~rl~~~lr~QGI~-GP------~~~~l~Gn~~e~~~~~~~ 65 (94)
+++++++++..+|--|.++++++.+..-+ |- --.+.-||..+-.+...+
T Consensus 54 ~~~~~~~l~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~ 109 (409)
T TIGR00540 54 IIFAFEWGLRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAK 109 (409)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33466889999998898887665553321 10 012445777776655443
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=73.18 E-value=9.4 Score=30.22 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhCC
Q 034451 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 45 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YGk 94 (94)
+||.+-+++||..++.+-.. +.| ...++++|.++||+
T Consensus 33 pgp~~~P~iG~~~~~~~~~~---------~~~----~~~~~~~~~~~yG~ 69 (472)
T PLN02987 33 PGSLGLPLVGETLQLISAYK---------TEN----PEPFIDERVARYGS 69 (472)
T ss_pred CCCcCCCchhhHHHHHhhcc---------cCC----hHHHHHHHHHHhch
Confidence 47777889999977632000 011 12356888888884
No 30
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=60.91 E-value=23 Score=18.56 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=21.4
Q ss_pred chHHHHHHHHHcCCCCCCCcCCCCCHHHHHHH
Q 034451 31 RPKKLEKFLRQQGLKGNSYRLLFGDLKENSIE 62 (94)
Q Consensus 31 ~P~rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~ 62 (94)
.=..|+..|.++||.-|+.. .+-.|+.++
T Consensus 5 s~~~L~~wL~~~gi~~~~~~---~~rd~Ll~~ 33 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA---KTRDELLKL 33 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC---CCHHHHHHH
Confidence 34678999999999988776 555555543
No 31
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=48.03 E-value=16 Score=24.01 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=18.5
Q ss_pred hHHHHHHHHHcCCCCCCCcCCCCC
Q 034451 32 PKKLEKFLRQQGLKGNSYRLLFGD 55 (94)
Q Consensus 32 P~rl~~~lr~QGI~GP~~~~l~Gn 55 (94)
-..+.++|+++||+|---++-.|.
T Consensus 25 A~Al~~~L~~~gI~Gk~i~l~T~~ 48 (100)
T PF15643_consen 25 ASALKQFLKQAGIPGKIIRLYTGY 48 (100)
T ss_pred HHHHHHHHHHCCCCceEEEEEecC
Confidence 467889999999999766665543
No 32
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=43.99 E-value=63 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.4
Q ss_pred HHHHHHHHhchHHHHHHHHHcCCCCCCCc
Q 034451 22 WRVLNWVWLRPKKLEKFLRQQGLKGNSYR 50 (94)
Q Consensus 22 ~~~~~~~w~~P~rl~~~lr~QGI~GP~~~ 50 (94)
..++..+|..|+.+.+.|++||..=|--|
T Consensus 289 s~fys~i~~nP~diA~~Lkk~g~~IpGiR 317 (395)
T TIGR02920 289 SYFFTFVNINPKEISKSFRKSGNYIPGIA 317 (395)
T ss_pred HHHHHHheECHHHHHHHHHHCCCCccCcC
Confidence 45667789999999999999986433333
No 33
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=41.53 E-value=16 Score=21.46 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=9.6
Q ss_pred hHHHHHHHhhC
Q 034451 83 PFLHKLVNDYG 93 (94)
Q Consensus 83 P~~~~w~k~YG 93 (94)
=.|.+|.++||
T Consensus 52 ~~ye~w~~~FG 62 (62)
T PF09336_consen 52 KKYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHcC
Confidence 46899999999
No 34
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=40.73 E-value=29 Score=22.29 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCCCcCCCC--CHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhC
Q 034451 45 KGNSYRLLFG--DLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYG 93 (94)
Q Consensus 45 ~GP~~~~l~G--n~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YG 93 (94)
+-|.|+.++| .+.|++.+..+....-+-++|++.|+.. +.+.+..|
T Consensus 33 ~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~---rNLe~~~~ 80 (95)
T PF13167_consen 33 RKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQ---RNLEKALG 80 (95)
T ss_pred CCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHH---HHHHHHHC
Confidence 4577888875 5888877654432222224788777754 44444443
No 35
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=38.27 E-value=1e+02 Score=24.51 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.2
Q ss_pred HHHHHHHHHhchHHHHHHHHHcCCC
Q 034451 21 AWRVLNWVWLRPKKLEKFLRQQGLK 45 (94)
Q Consensus 21 ~~~~~~~~w~~P~rl~~~lr~QGI~ 45 (94)
+..++..+|..|+.+.+.||+||.-
T Consensus 295 fs~fys~i~~nP~diAe~lkk~g~~ 319 (404)
T PRK12417 295 LSYFFSFVNINTKQIAKDMLKSGNY 319 (404)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCCc
Confidence 4467788899999999999999853
No 36
>PLN03018 homomethionine N-hydroxylase
Probab=38.03 E-value=60 Score=26.21 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=22.1
Q ss_pred HHHHHHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHH
Q 034451 23 RVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKEN 59 (94)
Q Consensus 23 ~~~~~~w~~P~rl~~~lr~QGI~GP~~~~l~Gn~~e~ 59 (94)
.++..+.-||..-.+. ..+=.+||++-+++||+.++
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~PPgp~~~P~iGnl~~l 57 (534)
T PLN03018 22 TLLGRILSRPSKTKDR-SRQLPPGPPGWPILGNLPEL 57 (534)
T ss_pred HHHHHHHhhhcccCCC-CCCCCcCCCCCCeeccHHHh
Confidence 4556666666332221 11125699999999999776
No 37
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=35.87 E-value=12 Score=32.47 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCCCcCC
Q 034451 35 LEKFLRQQGLKGNSYRLL 52 (94)
Q Consensus 35 l~~~lr~QGI~GP~~~~l 52 (94)
++|.+||+|+.||++.+.
T Consensus 65 v~~~l~k~g~~GPk~~~~ 82 (787)
T PF03115_consen 65 VKRQLRKKGVTGPKPAVS 82 (787)
T ss_dssp ------------------
T ss_pred HhhhhhccCCCCCCcceE
Confidence 467899999999999873
No 38
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=34.98 E-value=66 Score=20.95 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCC---CCCCcCCCCCHHHHHHHHHHhhcC
Q 034451 34 KLEKFLRQQGLK---GNSYRLLFGDLKENSIELKEAKAR 69 (94)
Q Consensus 34 rl~~~lr~QGI~---GP~~~~l~Gn~~e~~~~~~~a~~~ 69 (94)
+..+.++..|++ ||-...+=|++.|+.+..+++...
T Consensus 25 ~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~Ea 63 (100)
T COG0011 25 EAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEA 63 (100)
T ss_pred HHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHHH
Confidence 456789999996 899999999999988776666443
No 39
>PF15187 Augurin: Oesophageal cancer-related gene 4
Probab=34.09 E-value=56 Score=21.73 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCCCCCcCCC--CC--HHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhh
Q 034451 34 KLEKFLRQQGLKGNSYRLLF--GD--LKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDY 92 (94)
Q Consensus 34 rl~~~lr~QGI~GP~~~~l~--Gn--~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~Y 92 (94)
.|++.|++.-.+|+|.+--+ +. .+|...-....+ -.+--|--|...+|.++|
T Consensus 2 kL~~~LqkRea~~~p~k~~VaV~~skAkeFL~~l~R~k-------R~lWDRsrPdVQQW~qQF 57 (114)
T PF15187_consen 2 KLKRMLQKREAPGAPSKASVAVPESKAKEFLASLKRQK-------RQLWDRSRPDVQQWYQQF 57 (114)
T ss_pred hHHHHHHhccCCCCCCcCccccCHHHHHHHHHHhhhHH-------HhhhccCCHHHHHHHHHH
Confidence 47788999988887776543 22 334332211111 122335567888998875
No 40
>PF13276 HTH_21: HTH-like domain
Probab=33.58 E-value=46 Score=18.69 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=16.2
Q ss_pred hchHHHHHHHHHcCCCCCCC
Q 034451 30 LRPKKLEKFLRQQGLKGNSY 49 (94)
Q Consensus 30 ~~P~rl~~~lr~QGI~GP~~ 49 (94)
..-+++.+.|++.||..+..
T Consensus 38 v~~krV~RlM~~~gL~~~~r 57 (60)
T PF13276_consen 38 VSRKRVRRLMREMGLRSKRR 57 (60)
T ss_pred ccHHHHHHHHHHcCCcccCC
Confidence 67788899999999987654
No 41
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=32.47 E-value=1.3e+02 Score=21.66 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCC------------CCCCCCcccccchHHHHHHHhhCC
Q 034451 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARP------------LSLDDNIAIRVNPFLHKLVNDYGM 94 (94)
Q Consensus 34 rl~~~lr~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~------------~~~shdi~prv~P~~~~w~k~YGk 94 (94)
.+-+.++++|+++|-...-..+..++.+...++...- .+.++.-.|....|..+..++||+
T Consensus 203 ~~~~~l~~~g~~~p~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~g~ 275 (312)
T cd06333 203 LPAKNLRERGYKGPIYQTHGVASPDFLRLAGKAAEGAILPAGPVLVADQLPDSDPQKKVALDFVKAYEAKYGA 275 (312)
T ss_pred HHHHHHHHcCCCCCEEeecCcCcHHHHHHhhHhhcCcEeecccceeeeeCCCCCcchHHHHHHHHHHHHHhCC
Confidence 3557889999987643222222344444322221111 011112123455677788888874
No 42
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=31.25 E-value=1.1e+02 Score=17.56 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=15.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034451 1 MELPLKSIALTIVIVTVLTWAWRVLNWVWL 30 (94)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 30 (94)
|+.++.+-++..+..++++.+..++.-.|.
T Consensus 1 MDCvLRs~L~~~F~~lIC~Fl~~~~~F~~F 30 (54)
T PF06716_consen 1 MDCVLRSYLLLAFGFLICLFLFCLVVFIWF 30 (54)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555434443333334444454
No 43
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=30.56 E-value=45 Score=18.50 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=11.0
Q ss_pred hHHHHHHHHHcCCC
Q 034451 32 PKKLEKFLRQQGLK 45 (94)
Q Consensus 32 P~rl~~~lr~QGI~ 45 (94)
-.-|++.|++.|++
T Consensus 8 d~eL~~~L~~~G~~ 21 (44)
T smart00540 8 DAELRAELKQYGLP 21 (44)
T ss_pred HHHHHHHHHHcCCC
Confidence 34578899999996
No 44
>PF15050 SCIMP: SCIMP protein
Probab=29.18 E-value=1.8e+02 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=10.4
Q ss_pred HHHHHcCCCCCCCcCCCCCHHHHHHH
Q 034451 37 KFLRQQGLKGNSYRLLFGDLKENSIE 62 (94)
Q Consensus 37 ~~lr~QGI~GP~~~~l~Gn~~e~~~~ 62 (94)
|.+.|||=+=---+.+--+-.+..+|
T Consensus 32 R~~lRqGkkweiakp~k~~~rdeEkm 57 (133)
T PF15050_consen 32 RWQLRQGKKWEIAKPLKQKQRDEEKM 57 (133)
T ss_pred HHHHHccccceeccchhhhcccHHHH
Confidence 44455554433333333333333333
No 45
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=28.86 E-value=1.1e+02 Score=16.72 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=13.2
Q ss_pred HHHHHHhchHHHHHHHHHc
Q 034451 24 VLNWVWLRPKKLEKFLRQQ 42 (94)
Q Consensus 24 ~~~~~w~~P~rl~~~lr~Q 42 (94)
++...+++-+++++.++++
T Consensus 21 l~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 21 LIVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445677788888877765
No 46
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=28.09 E-value=55 Score=17.79 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=14.9
Q ss_pred CCCCcCCCCCHHHHHHHHHH
Q 034451 46 GNSYRLLFGDLKENSIELKE 65 (94)
Q Consensus 46 GP~~~~l~Gn~~e~~~~~~~ 65 (94)
+|..-.+.|...||+.+.++
T Consensus 6 ~~~~i~lvGKAWeIr~~Lke 25 (38)
T PF13072_consen 6 HENGIILVGKAWEIRAKLKE 25 (38)
T ss_pred cCCeEEEEehHHHHHHHHHH
Confidence 45566789999999885554
No 47
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.08 E-value=1.1e+02 Score=20.50 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=8.7
Q ss_pred HHHHHHHHhchHH
Q 034451 22 WRVLNWVWLRPKK 34 (94)
Q Consensus 22 ~~~~~~~w~~P~r 34 (94)
+-+++.+.|.|.+
T Consensus 21 ~~~l~kfl~kPi~ 33 (141)
T PRK08476 21 IVILNSWLYKPLL 33 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777787864
No 48
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.88 E-value=20 Score=25.61 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHhchHHHHHHHHHcCCC
Q 034451 22 WRVLNWVWLRPKKLEKFLRQQGLK 45 (94)
Q Consensus 22 ~~~~~~~w~~P~rl~~~lr~QGI~ 45 (94)
.+++-.+=|.+++-||.||+|=+.
T Consensus 59 lYlYERLtWT~~AKER~fK~Qfv~ 82 (171)
T PF04799_consen 59 LYLYERLTWTNKAKERAFKRQFVD 82 (171)
T ss_dssp ------------------------
T ss_pred HHHHHHHhcCchHHHHHHHHHHHH
Confidence 344555569999999999999654
No 49
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=27.58 E-value=55 Score=18.19 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=16.3
Q ss_pred hchHHHHHHHHHcCCC---CCCCcC
Q 034451 30 LRPKKLEKFLRQQGLK---GNSYRL 51 (94)
Q Consensus 30 ~~P~rl~~~lr~QGI~---GP~~~~ 51 (94)
-+|.+-.+.|+++||+ +|.+++
T Consensus 15 k~~~~Q~~~L~~~Gi~~~~~~~G~p 39 (47)
T PF13986_consen 15 KRPSKQIRWLRRNGIPFVVRADGRP 39 (47)
T ss_pred CCHHHHHHHHHHCCCeeEECCCCCE
Confidence 3788888999999995 444443
No 50
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=27.38 E-value=87 Score=24.69 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCC-----CCcCCC---CCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhC
Q 034451 33 KKLEKFLRQQGLKGN-----SYRLLF---GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYG 93 (94)
Q Consensus 33 ~rl~~~lr~QGI~GP-----~~~~l~---Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YG 93 (94)
.|+.+++|+.|+++| +|+... |-.+.+++. -|..-.++||=..+-+++|
T Consensus 96 lrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~------------~D~ll~ifPFE~~~y~~~g 152 (373)
T PF02684_consen 96 LRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKY------------VDHLLVIFPFEPEFYKKHG 152 (373)
T ss_pred HHHHHHHHHhCCCceEEEEECCceeeeCccHHHHHHHH------------HhheeECCcccHHHHhccC
Confidence 578899999999987 455543 444444442 2446667788788877776
No 51
>PRK11677 hypothetical protein; Provisional
Probab=26.57 E-value=1.7e+02 Score=19.89 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhchHHHHHHHHH
Q 034451 19 TWAWRVLNWVWLRPKKLEKFLRQ 41 (94)
Q Consensus 19 ~~~~~~~~~~w~~P~rl~~~lr~ 41 (94)
+.+.|+...---..+.+++.|.+
T Consensus 18 ~~~~R~~~~~~~~q~~le~eLe~ 40 (134)
T PRK11677 18 AVAMRFGNRKLRQQQALQYELEK 40 (134)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 33445444333455666665443
No 52
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.40 E-value=1.2e+02 Score=19.15 Aligned_cols=11 Identities=9% Similarity=0.450 Sum_probs=3.3
Q ss_pred HHHHHHHHHHH
Q 034451 19 TWAWRVLNWVW 29 (94)
Q Consensus 19 ~~~~~~~~~~w 29 (94)
.++|.++..-+
T Consensus 20 IvvW~iv~ieY 30 (81)
T PF00558_consen 20 IVVWTIVYIEY 30 (81)
T ss_dssp HHHHHHH----
T ss_pred HHHHHHHHHHH
Confidence 34455544433
No 53
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=26.24 E-value=50 Score=21.17 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=12.2
Q ss_pred hchHHHHHHHHHcCCCC
Q 034451 30 LRPKKLEKFLRQQGLKG 46 (94)
Q Consensus 30 ~~P~rl~~~lr~QGI~G 46 (94)
+.|++|+..|++.||..
T Consensus 43 ~G~~~I~~~L~~kGi~~ 59 (121)
T PF02631_consen 43 KGPRRIRQKLKQKGIDR 59 (121)
T ss_dssp --HHHHHHHHHHTT--H
T ss_pred ccHHHHHHHHHHHCCCh
Confidence 67999999999999974
No 54
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=25.40 E-value=1.3e+02 Score=16.62 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHcCCC
Q 034451 13 VIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLK 45 (94)
Q Consensus 13 ~~~~~~~~~~~~~~~~w~~P~rl~~~lr~QGI~ 45 (94)
+++++.+++.+++..+ ++|.|++.|+.
T Consensus 23 lIl~vG~~va~~v~~~------~~~~l~~~~~d 49 (53)
T PF05552_consen 23 LILIVGWWVAKFVRKL------VRRLLEKRGVD 49 (53)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHcCCc
Confidence 3344445555666543 46788888774
No 55
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=25.15 E-value=53 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCCCCCCC
Q 034451 33 KKLEKFLRQQGLKGNSY 49 (94)
Q Consensus 33 ~rl~~~lr~QGI~GP~~ 49 (94)
.++|++|+++||+|--.
T Consensus 147 ~~i~~~mK~~~I~g~~~ 163 (211)
T COG2454 147 GRIEEKMKSLGIPGEAS 163 (211)
T ss_pred HHHHHHHHhcCCCceeE
Confidence 47899999999998544
No 56
>PF12994 DUF3878: Domain of unknown function, E. rectale Gene description (DUF3878); InterPro: IPR024538 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.45 E-value=66 Score=24.95 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.9
Q ss_pred chHHHHHHHHHcCCCCCCCcCCCCCH
Q 034451 31 RPKKLEKFLRQQGLKGNSYRLLFGDL 56 (94)
Q Consensus 31 ~P~rl~~~lr~QGI~GP~~~~l~Gn~ 56 (94)
.-+++++.|++||+.|--|.+.-++.
T Consensus 249 ~~~~~~~~L~e~Gf~G~~p~~~~~~~ 274 (299)
T PF12994_consen 249 KRKQAENELKEQGFEGKYPEYQREEP 274 (299)
T ss_pred HHHHHHHHHHhcCCcccCcceecCCc
Confidence 45677889999999999999888873
No 57
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.24 E-value=66 Score=18.95 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCCC---CCCc
Q 034451 33 KKLEKFLRQQGLKG---NSYR 50 (94)
Q Consensus 33 ~rl~~~lr~QGI~G---P~~~ 50 (94)
-+.++.|+++||++ |.|+
T Consensus 15 ~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 15 MKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred HHHHHHHHHCCCcEEEeCCCh
Confidence 46789999999975 5554
No 58
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=23.32 E-value=1.8e+02 Score=18.45 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHHHHHcCCC---CCCCcCCCCCHHHHHHHHHHhh
Q 034451 35 LEKFLRQQGLK---GNSYRLLFGDLKENSIELKEAK 67 (94)
Q Consensus 35 l~~~lr~QGI~---GP~~~~l~Gn~~e~~~~~~~a~ 67 (94)
..+.+++.|++ ||-..-+-|++.|+.+...++.
T Consensus 24 ~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~~~~ 59 (97)
T TIGR00106 24 AIEVLKESGLKYELHPMGTLIEGDLDELFEAIKAIH 59 (97)
T ss_pred HHHHHHHcCCCeEecCCccEEecCHHHHHHHHHHHH
Confidence 45778889996 8888889999999877655553
No 59
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=22.84 E-value=2.7e+02 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.1
Q ss_pred HHHHHHHHH-----hchHHHHHHHHHcCCCCC
Q 034451 21 AWRVLNWVW-----LRPKKLEKFLRQQGLKGN 47 (94)
Q Consensus 21 ~~~~~~~~w-----~~P~rl~~~lr~QGI~GP 47 (94)
+..++..+| ..|+.+.+.|++||.-=|
T Consensus 372 fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~Ip 403 (474)
T PTZ00219 372 SCALFSKTWIEVSGSSAKDVAKQLKDQGMGMV 403 (474)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCcc
Confidence 345667788 699999999999986433
No 60
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=22.68 E-value=2.6e+02 Score=19.08 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=10.4
Q ss_pred HhchHHHHHHHHHcCCCC
Q 034451 29 WLRPKKLEKFLRQQGLKG 46 (94)
Q Consensus 29 w~~P~rl~~~lr~QGI~G 46 (94)
|-|=.+.-+.+..||.-|
T Consensus 30 ~srfq~af~t~~~~G~vg 47 (128)
T COG4578 30 WSRFQSAFGTFQNQGYVG 47 (128)
T ss_pred HHHHHHHHhHHhhCceee
Confidence 334444445678888754
No 61
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=22.62 E-value=1.4e+02 Score=17.74 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhchHHHHHHHHHcCCCCCC
Q 034451 20 WAWRVLNWVWLRPKKLEKFLRQQGLKGNS 48 (94)
Q Consensus 20 ~~~~~~~~~w~~P~rl~~~lr~QGI~GP~ 48 (94)
.+=|-+..-+=|..|+-..|.+.||-||+
T Consensus 24 ~lQR~~~IGynrAariid~lE~~GiV~p~ 52 (63)
T smart00843 24 LLQRRLRIGYNRAARLIDQLEEEGIVGPA 52 (63)
T ss_pred HHHHHHhcchhHHHHHHHHHHHCcCCCCC
Confidence 44567777788999999999999999885
No 62
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=22.37 E-value=3.2e+02 Score=21.53 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.6
Q ss_pred hchHHHHHHHHHcCCC-CCCCcCCCCCHHHHHHH
Q 034451 30 LRPKKLEKFLRQQGLK-GNSYRLLFGDLKENSIE 62 (94)
Q Consensus 30 ~~P~rl~~~lr~QGI~-GP~~~~l~Gn~~e~~~~ 62 (94)
..+..+.+.|++.||+ |-. ++-+ |..++.+-
T Consensus 116 ~t~~~i~~~L~e~Gi~~G~~-k~~i-d~~~ie~~ 147 (382)
T TIGR02876 116 ETPYEIRKQLKEMGIKPGVW-KFSV-DVYKLERK 147 (382)
T ss_pred CCHHHHHHHHHHcCCCcCee-eCCC-CHHHHHHH
Confidence 5899999999999998 543 3334 88777653
No 63
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=22.02 E-value=98 Score=19.78 Aligned_cols=20 Identities=10% Similarity=0.341 Sum_probs=17.2
Q ss_pred chHHHHHHHHHcCCCCCCCc
Q 034451 31 RPKKLEKFLRQQGLKGNSYR 50 (94)
Q Consensus 31 ~P~rl~~~lr~QGI~GP~~~ 50 (94)
.|.-+++.|.+.|+.|+.++
T Consensus 29 tP~VI~ral~Khnl~~~~~~ 48 (87)
T cd00153 29 APQVIRRAMEKHNLESEVAE 48 (87)
T ss_pred CHHHHHHHHHHhCCCcCCcc
Confidence 58899999999999998443
No 64
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.16 E-value=1.3e+02 Score=25.47 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCCC-----CCcCCC---CCHHHHHHHHHHhhcCCCCCCCCcccccchHHHHHHHhhC
Q 034451 33 KKLEKFLRQQGLKGN-----SYRLLF---GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYG 93 (94)
Q Consensus 33 ~rl~~~lr~QGI~GP-----~~~~l~---Gn~~e~~~~~~~a~~~~~~~shdi~prv~P~~~~w~k~YG 93 (94)
.|+.+++|++|+++| +|+... |-.+.+++. -|-+--++||=..+-+++|
T Consensus 324 lrLAK~lkk~Gi~ipviyYVsPqVWAWR~~Rikki~k~------------vD~ll~IfPFE~~~y~~~g 380 (608)
T PRK01021 324 FLLIKKLRKRGYKGKIVHYVCPSIWAWRPKRKTILEKY------------LDLLLLILPFEQNLFKDSP 380 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEECccceeeCcchHHHHHHH------------hhhheecCccCHHHHHhcC
Confidence 468889999998777 555543 445555542 1334445555555555554
No 65
>COG3771 Predicted membrane protein [Function unknown]
Probab=21.07 E-value=2.5e+02 Score=18.19 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=10.1
Q ss_pred hchHHHHHHHHHcCC
Q 034451 30 LRPKKLEKFLRQQGL 44 (94)
Q Consensus 30 ~~P~rl~~~lr~QGI 44 (94)
.+-.|++|.+++|--
T Consensus 69 l~~~~l~rqiKr~~~ 83 (97)
T COG3771 69 LSLMRLERQIKRLEN 83 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555677787777743
No 66
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=21.01 E-value=1.6e+02 Score=19.95 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=9.5
Q ss_pred HHHHHHHhchHHHHHHHHH
Q 034451 23 RVLNWVWLRPKKLEKFLRQ 41 (94)
Q Consensus 23 ~~~~~~w~~P~rl~~~lr~ 41 (94)
-+++.+.|.| +.+.|.+
T Consensus 23 ~ll~~~l~~p--i~~~l~~ 39 (164)
T PRK14471 23 LLLAKFAWKP--ILGAVKE 39 (164)
T ss_pred HHHHHHhHHH--HHHHHHH
Confidence 4566666777 4444433
No 67
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=21.00 E-value=2.2e+02 Score=22.16 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.1
Q ss_pred chHHHHHHHHHcCCCC
Q 034451 31 RPKKLEKFLRQQGLKG 46 (94)
Q Consensus 31 ~P~rl~~~lr~QGI~G 46 (94)
|=.++||..++|||=|
T Consensus 317 rie~lEr~~ek~~VLG 332 (348)
T PF08733_consen 317 RIERLERKEEKEGVLG 332 (348)
T ss_pred HHHHHHHHHHhcCccC
Confidence 3457899999999987
Done!