BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034452
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L2O|A Chain A, Solution Structure Of Human Hspc280 Protein
          Length = 89

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 54/78 (69%)

Query: 1  MNVXXXXXXXXXXIQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLT 60
          MNV          I RLG    DG   V FGVLF DD+ AN+FEALVGTL+AAK+RK +T
Sbjct: 1  MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKSANLFEALVGTLKAAKRRKIVT 60

Query: 61 YDGELLLQGVHDNVEITL 78
          Y GELLLQGVHD+V+I L
Sbjct: 61 YPGELLLQGVHDDVDIIL 78


>pdb|2KRH|A Chain A, Structure Of The C-Terminal Actin Binding Domain Of Abra
          Length = 85

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 14 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDN 73
          I+ + + + DG  +VTFG LF  DR   I + +VG L  A+K   + ++GE+L QG  D+
Sbjct: 21 IRTMARHRRDGKIQVTFGELF--DRYVRISDKVVGILMRARKHGLVHFEGEMLWQGKDDH 78

Query: 74 VEITL 78
          V ITL
Sbjct: 79 VVITL 83


>pdb|1L4I|A Chain A, Crystal Structure Of The Periplasmic Chaperone Sfae
 pdb|1L4I|B Chain B, Crystal Structure Of The Periplasmic Chaperone Sfae
          Length = 206

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 20 IQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNV 74
          I P+G  +V   V  +DD+ + + ++ +      K  +F+       +QG  +N 
Sbjct: 10 IYPEGQKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENT 64


>pdb|2KEQ|A Chain A, Solution Structure Of Dnae Intein From Nostoc
          Punctiforme
          Length = 139

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 34 FHDDRCANIFEALV--GTL-RAAKKRKFLTYDGELL 66
          +HD     +FE  +  G+L RA K  KF+T DG++L
Sbjct: 49 WHDRGEQEVFEYCLEDGSLIRATKDHKFMTVDGQML 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,901,390
Number of Sequences: 62578
Number of extensions: 55018
Number of successful extensions: 169
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)