Query 034452
Match_columns 94
No_of_seqs 101 out of 110
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2o_A UPF0727 protein C6ORF11 100.0 9.2E-50 3.2E-54 271.4 5.1 84 1-84 1-84 (89)
2 2krh_A Actin-binding RHO-activ 100.0 2.2E-45 7.6E-50 248.0 0.7 77 2-80 9-85 (85)
3 2w7a_A LINE-1 ORF1P; RNA-bindi 52.8 6.4 0.00022 26.3 1.7 33 24-66 63-95 (100)
4 3a11_A Translation initiation 47.8 39 0.0013 26.2 5.7 68 4-81 121-200 (338)
5 1u61_A Hypothetical protein; s 43.6 9.3 0.00032 26.5 1.4 16 35-50 94-109 (138)
6 2gsl_A Hypothetical protein; a 40.2 11 0.00038 26.1 1.4 17 35-51 94-110 (137)
7 2ekg_A Proline dehydrogenase/d 39.7 68 0.0023 24.8 5.9 57 8-64 98-155 (327)
8 1t5o_A EIF2BD, translation ini 39.2 33 0.0011 26.9 4.1 73 4-81 126-214 (351)
9 2yvk_A Methylthioribose-1-phos 33.9 29 0.00099 27.5 3.1 74 4-82 153-242 (374)
10 2yko_A LINE-1 ORF1P; RNA-bindi 31.9 21 0.00072 27.2 1.9 17 48-64 126-142 (233)
11 3tvk_A DGC, diguanylate cyclas 31.4 1.1E+02 0.0038 20.8 5.4 61 8-68 102-169 (179)
12 4h6q_A Proline dehydrogenase; 30.6 90 0.0031 24.0 5.3 55 10-64 81-139 (312)
13 1t9k_A Probable methylthioribo 29.2 67 0.0023 25.1 4.4 75 3-82 127-217 (347)
14 1zke_A Hypothetical protein HP 26.6 32 0.0011 22.7 1.8 17 2-18 56-72 (83)
15 2k6x_A Sigma-A, RNA polymerase 25.7 40 0.0014 20.3 2.0 18 45-62 10-27 (72)
16 3ecs_A Translation initiation 22.7 61 0.0021 25.1 3.0 66 6-81 103-180 (315)
17 1nij_A Hypothetical protein YJ 20.9 24 0.00082 26.0 0.4 50 26-77 227-283 (318)
18 1jx6_A LUXP protein; protein-l 20.6 1.6E+02 0.0053 20.6 4.6 50 9-58 21-75 (342)
19 2l3g_A RHO guanine nucleotide 20.2 99 0.0034 20.6 3.3 30 43-72 77-107 (126)
No 1
>2l2o_A UPF0727 protein C6ORF115; HSPC280, winged helix, unknown function; NMR {Homo sapiens}
Probab=100.00 E-value=9.2e-50 Score=271.39 Aligned_cols=84 Identities=62% Similarity=0.944 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCceeeeeeccccccchhhHHHHHHHHHHHHHhcCceeecceeecccccCceEEEecC
Q 034452 1 MNVEEEVERLKEEIQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITLKP 80 (94)
Q Consensus 1 m~V~~Ei~~L~~~I~~~G~~~~dG~~~V~FG~LF~~~~~~~i~e~LVGtL~~ArK~~lV~FeGEmL~Qg~dD~V~I~Ll~ 80 (94)
|||++||.+||++|+++|++++||+++||||+||+|++|+||||||||||+||||||+|+|+|||||||+||||+||||+
T Consensus 1 m~V~~EI~~L~~~I~~~G~~~~dG~~~V~FG~LF~dd~~~ni~e~LVGtL~~ArK~k~V~FeGEmL~Qg~dD~V~ItLl~ 80 (89)
T 2l2o_A 1 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKSANLFEALVGTLKAAKRRKIVTYPGELLLQGVHDDVDIILLQ 80 (89)
T ss_dssp CCHHHHHHHHHHHHHHHCEECTTSSEEEEHHHHHHHHHHHCCCTTHHHHHHHHHHTTSEECSCSCCSSGGGTTCEEEECS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCEEEEeeeeecchHHhhHHHHHHHHHHHHHhcCceeeccceEeccCCCCeeEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 034452 81 PPPQ 84 (94)
Q Consensus 81 ~~~~ 84 (94)
|++.
T Consensus 81 ~~~~ 84 (89)
T 2l2o_A 81 DLEH 84 (89)
T ss_dssp CCCC
T ss_pred Chhh
Confidence 9975
No 2
>2krh_A Actin-binding RHO-activating protein; muscle, stress response, cardiac, actin-bindi cytoskeleton, actin-binding protein; NMR {Rattus norvegicus}
Probab=100.00 E-value=2.2e-45 Score=248.03 Aligned_cols=77 Identities=38% Similarity=0.595 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCceeeeeeccccccchhhHHHHHHHHHHHHHhcCceeecceeecccccCceEEEecC
Q 034452 2 NVEEEVERLKEEIQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITLKP 80 (94)
Q Consensus 2 ~V~~Ei~~L~~~I~~~G~~~~dG~~~V~FG~LF~~~~~~~i~e~LVGtL~~ArK~~lV~FeGEmL~Qg~dD~V~I~Ll~ 80 (94)
+|++||.+||++|+++|++++||+++||||+|| ++|+||||||||||+||||||+|+|+|||||||+||||+||||+
T Consensus 9 ~V~~Ei~~L~~~I~~~G~~~~dG~~~V~FG~LF--d~~~~i~e~lvGtL~~ArK~~~V~FeGEmL~Qg~dD~V~ItLL~ 85 (85)
T 2krh_A 9 HIYREIMELCFVIRTMARHRRDGKIQVTFGELF--DRYVRISDKVVGILMRARKHGLVHFEGEMLWQGKDDHVVITLLE 85 (85)
T ss_dssp GSCSTTHHHHHHHHHHCGGGGTSCCEEEHHHHH--HHHTTTTSCHHHHHHHHHTTSCBCCCSSCCCTTTSTTCEEEBCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEechHH--HHHHHHHHHHHHHHHHHHhcCceeecCceecccCCCCEEEEEeC
Confidence 689999999999999999999999999999999 58899999999999999999999999999999999999999986
No 3
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=52.79 E-value=6.4 Score=26.32 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=23.0
Q ss_pred CceeeeeeccccccchhhHHHHHHHHHHHHHhcCceeecceee
Q 034452 24 GSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELL 66 (94)
Q Consensus 24 G~~~V~FG~LF~~~~~~~i~e~LVGtL~~ArK~~lV~FeGEmL 66 (94)
-.+.|+|-..=.. --+|++||+++-|+|.|-..
T Consensus 63 RhIIvK~~~~~~K----------ErILkaar~k~~vtykg~pi 95 (100)
T 2w7a_A 63 RHIIVRFTKVEMK----------EKMLRAAREKGRVTLKGKPI 95 (100)
T ss_dssp CEEEEEESCHHHH----------HHHHHHHHHHCCEEETTEEE
T ss_pred CeEEEEecccccH----------HHHHHHHHHhCceeeCCcce
Confidence 3466777543222 25789999999999999743
No 4
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=47.80 E-value=39 Score=26.17 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCC-CCCCceeeeeeccccccchhhHHHHHHHHHHHHHhcC----ceeecceeeccc-------cc
Q 034452 4 EEEVERLKEEIQRLGKI-QPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRK----FLTYDGELLLQG-------VH 71 (94)
Q Consensus 4 ~~Ei~~L~~~I~~~G~~-~~dG~~~V~FG~LF~~~~~~~i~e~LVGtL~~ArK~~----lV~FeGEmL~Qg-------~d 71 (94)
.+|..+.++.|-++|.. -.||....|+|- |..+.|.|+.|.++| ++-=|+..++|| ..
T Consensus 121 ~~e~~~~~~~I~~~g~~~I~~g~~ILTh~~----------S~tvl~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~ 190 (338)
T 3a11_A 121 IHNSEKALERIGEFGAKRIEDGDVIMTHCH----------SKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 190 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTCEEEECSC----------CHHHHHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEeCC----------cHHHHHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHh
Confidence 45666677778887853 468888888663 367889999997765 334467778888 34
Q ss_pred CceEEEecCC
Q 034452 72 DNVEITLKPP 81 (94)
Q Consensus 72 D~V~I~Ll~~ 81 (94)
+.+++||.-+
T Consensus 191 ~GI~vtlI~D 200 (338)
T 3a11_A 191 YGIPVIYVVD 200 (338)
T ss_dssp TTCCEEEECG
T ss_pred CCCCEEEEeh
Confidence 6777777654
No 5
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=43.63 E-value=9.3 Score=26.53 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=14.1
Q ss_pred cccchhhHHHHHHHHH
Q 034452 35 HDDRCANIFEALVGTL 50 (94)
Q Consensus 35 ~~~~~~~i~e~LVGtL 50 (94)
.+||.++-||+|+|-|
T Consensus 94 ~~Yr~A~~fEALiGal 109 (138)
T 1u61_A 94 QTYRHSTAFEALIGYH 109 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHH
Confidence 3588999999999987
No 6
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=40.23 E-value=11 Score=26.11 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.4
Q ss_pred cccchhhHHHHHHHHHH
Q 034452 35 HDDRCANIFEALVGTLR 51 (94)
Q Consensus 35 ~~~~~~~i~e~LVGtL~ 51 (94)
.+|+.++.||+|+|-|=
T Consensus 94 ~~Y~~At~fEALiGaLY 110 (137)
T 2gsl_A 94 MEYKEATALEAIIGAMY 110 (137)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 35789999999999873
No 7
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; flavoenzyme, prodh, beta-alpha-barrel inhibitor, inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A*
Probab=39.66 E-value=68 Score=24.84 Aligned_cols=57 Identities=21% Similarity=0.034 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCCCCCCceeeeeeccccccchhhHHHHHHHHHHHHHhcCc-eeecce
Q 034452 8 ERLKEEIQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKF-LTYDGE 64 (94)
Q Consensus 8 ~~L~~~I~~~G~~~~dG~~~V~FG~LF~~~~~~~i~e~LVGtL~~ArK~~l-V~FeGE 64 (94)
..-.+.|+.+|..+.++-++||+-.|........+.+.+--+..+|+++|+ |..+.|
T Consensus 98 ~~yl~~i~~i~~~~~~~~vSvKlSalg~~~~~~~~~~rl~~i~~~A~~~gv~v~IDaE 155 (327)
T 2ekg_A 98 RGLLELVWALAGKPWPKYISLXLTQLGLDLSEDLALALLREVLREAEPRGVFVRLDME 155 (327)
T ss_dssp HHHHHHHHHHTTCSSCEEEEECGGGGTTTTCHHHHHHHHHHHHHHHGGGTEEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcccCccccCHHHHHHHHHHHHHHHHHcCCEEEEcCc
Confidence 344556666666566788999998888766667888899999999999983 444443
No 8
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=39.16 E-value=33 Score=26.88 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCC-CCCCceeeeee---ccccccchhhHHHHHHHHHHHHHhcC----ceeecceeecccc-----
Q 034452 4 EEEVERLKEEIQRLGKI-QPDGSYKVTFG---VLFHDDRCANIFEALVGTLRAAKKRK----FLTYDGELLLQGV----- 70 (94)
Q Consensus 4 ~~Ei~~L~~~I~~~G~~-~~dG~~~V~FG---~LF~~~~~~~i~e~LVGtL~~ArK~~----lV~FeGEmL~Qg~----- 70 (94)
.+|..+.++.|-++|.. -.||....|++ .|-.-. | + .+.|.|+.|.++| ++-=|+..++||.
T Consensus 126 ~~e~~~~~~~I~~~g~~~I~~g~~ILThcnsg~lat~g-~---g-tal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~ 200 (351)
T 1t5o_A 126 AEEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVD-W---G-TALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCW 200 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSS-S---C-SHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccccccC-C---C-hHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHH
Confidence 45666677778888854 46888888874 443211 1 1 2459999998775 3444777788884
Q ss_pred ---cCceEEEecCC
Q 034452 71 ---HDNVEITLKPP 81 (94)
Q Consensus 71 ---dD~V~I~Ll~~ 81 (94)
.+.+++||.-+
T Consensus 201 eL~~~GI~vtlI~D 214 (351)
T 1t5o_A 201 ELMEDGIDVTLITD 214 (351)
T ss_dssp HHHHTTCCEEEECG
T ss_pred HHHhCCCCEEEEeh
Confidence 37788887754
No 9
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=33.94 E-value=29 Score=27.52 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCCCceeeeee---ccccccchhhHHHHHHHHHHHHHhcC----ceeecceeecccc-----
Q 034452 4 EEEVERLKEEIQRLGKI-QPDGSYKVTFG---VLFHDDRCANIFEALVGTLRAAKKRK----FLTYDGELLLQGV----- 70 (94)
Q Consensus 4 ~~Ei~~L~~~I~~~G~~-~~dG~~~V~FG---~LF~~~~~~~i~e~LVGtL~~ArK~~----lV~FeGEmL~Qg~----- 70 (94)
.+|..+-|+.|-++|.. -.||....|++ .|-.-. | . ...|.|+.|.++| ++-=|+..++||.
T Consensus 153 ~~e~~~~~~~I~~~g~~~I~~g~~ILThcnsg~Lat~g-~---g-Tal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~ 227 (374)
T 2yvk_A 153 QVEDEETCRLIGQNALQLFKKGDRIMTICNAGSIATSR-Y---G-TALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAW 227 (374)
T ss_dssp HHHHHHHHHHHHHHHGGGCCTTCEEEECSCCSTTTSSS-S---C-STTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccccCC-C---c-HHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHH
Confidence 45666677778888854 46888888874 443211 1 1 2358999998876 3444777888884
Q ss_pred ---cCceEEEecCCC
Q 034452 71 ---HDNVEITLKPPP 82 (94)
Q Consensus 71 ---dD~V~I~Ll~~~ 82 (94)
.+.+++||.-+.
T Consensus 228 eL~~~GIpvtlI~Ds 242 (374)
T 2yvk_A 228 ELMQGGIDVTLITDS 242 (374)
T ss_dssp HHHTTTCEEEEECGG
T ss_pred HHHHcCCCEEEEehh
Confidence 378888887643
No 10
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.93 E-value=21 Score=27.19 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.4
Q ss_pred HHHHHHHhcCceeecce
Q 034452 48 GTLRAAKKRKFLTYDGE 64 (94)
Q Consensus 48 GtL~~ArK~~lV~FeGE 64 (94)
-+|++||+++-|+|.|-
T Consensus 126 rILkaaR~k~~vtykG~ 142 (233)
T 2yko_A 126 KMLRAAREKGRVTLKGK 142 (233)
T ss_dssp HHHHHHHTTSCEEETTE
T ss_pred HHHHHHHHhcccccCCC
Confidence 57999999999999986
No 11
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=31.38 E-value=1.1e+02 Score=20.84 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCCC--ceeeeeecc--ccccchhhHHHHHHHHHHHHHhcC---ceeecceeecc
Q 034452 8 ERLKEEIQRLGKIQPDG--SYKVTFGVL--FHDDRCANIFEALVGTLRAAKKRK---FLTYDGELLLQ 68 (94)
Q Consensus 8 ~~L~~~I~~~G~~~~dG--~~~V~FG~L--F~~~~~~~i~e~LVGtL~~ArK~~---lV~FeGEmL~Q 68 (94)
..+++.|.+.--...++ .+++++|.- +..+-...+...--=.|..||+.| ++.|+-|...+
T Consensus 102 ~~i~~~i~~~~~~~~~~~~~vt~SiGia~~~~~~~~~~ll~~Ad~Aly~AK~~Grn~~~~~~~~~~~~ 169 (179)
T 3tvk_A 102 VRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVIN 169 (179)
T ss_dssp HHHHHHHHHSCEEETTEEECCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSSEEEEECTTSCEE
T ss_pred HHHHHHHHcCCcccCCceEEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEECHHHHHH
Confidence 34445554433222233 356677854 333322333333334577889875 56676544433
No 12
>4h6q_A Proline dehydrogenase; BETA8-alpha8-barrel, flavoenzyme, oxidoreductase; HET: FAD; 1.36A {Deinococcus radiodurans} PDB: 4h6r_A*
Probab=30.57 E-value=90 Score=23.96 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCCCCceeeeeeccccccc---hhhHHHHHHHHHHHHHhcC-ceeecce
Q 034452 10 LKEEIQRLGKIQPDGSYKVTFGVLFHDDR---CANIFEALVGTLRAAKKRK-FLTYDGE 64 (94)
Q Consensus 10 L~~~I~~~G~~~~dG~~~V~FG~LF~~~~---~~~i~e~LVGtL~~ArK~~-lV~FeGE 64 (94)
-.+.|+.+|..+.+..++||+-.|..... -....+.+--+..+|+++| .|..+.|
T Consensus 81 yl~~i~~i~~~~~~~~vSvKlSalg~~~~~~~~~~~~~~l~~i~~~A~~~~v~v~iDaE 139 (312)
T 4h6q_A 81 VIKLIEAAHAAGIKPYVSIKLSSVGQGKDENGEDLGLTNARRIIAKAKEYGGFICLDME 139 (312)
T ss_dssp HHHHHHHHHHTTCCCEEEECGGGTTTTCEETTEEHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHhCCCCCeEEEehhhcccccCcccHHHHHHHHHHHHHHHHHcCCEEEEccC
Confidence 33444554444445679999877775442 2356788999999999998 4555554
No 13
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=29.19 E-value=67 Score=25.07 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCCceeeeeec---cccccchhhHHHHHHHHHHHHHhcC----ceeecceeecccc----
Q 034452 3 VEEEVERLKEEIQRLGKI-QPDGSYKVTFGV---LFHDDRCANIFEALVGTLRAAKKRK----FLTYDGELLLQGV---- 70 (94)
Q Consensus 3 V~~Ei~~L~~~I~~~G~~-~~dG~~~V~FG~---LF~~~~~~~i~e~LVGtL~~ArK~~----lV~FeGEmL~Qg~---- 70 (94)
+.+|..+.|+.|-++|.. -.||....|+|- |-. +... .+.|.|+.|.++| ++-=|+..++||.
T Consensus 127 ~~~e~~~~~~~I~~~g~~~I~~g~~ILThcns~~lat----~~~g-tvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta 201 (347)
T 1t9k_A 127 MAYEDIEVNKAIGKNGAQLIKDGSTILTHCNAGALAT----VDYG-TALGVIRAAVESGKRIRVFADETRPYLQGARLTA 201 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTEEEEECSCCSGGGS----SSSC-SHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCcccc----CCcc-HHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHH
Confidence 345666777778887853 468888888752 321 1112 3459999998775 3334777788884
Q ss_pred ----cCceEEEecCCC
Q 034452 71 ----HDNVEITLKPPP 82 (94)
Q Consensus 71 ----dD~V~I~Ll~~~ 82 (94)
.+.+++||.-+.
T Consensus 202 ~eL~~~GI~vtlI~Ds 217 (347)
T 1t9k_A 202 WELMKDGIEVYVITDN 217 (347)
T ss_dssp HHHHTTTCEEEEECGG
T ss_pred HHHHhCCCCEEEEehh
Confidence 378888887643
No 14
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=26.58 E-value=32 Score=22.67 Aligned_cols=17 Identities=59% Similarity=0.747 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHhcC
Q 034452 2 NVEEEVERLKEEIQRLG 18 (94)
Q Consensus 2 ~V~~Ei~~L~~~I~~~G 18 (94)
++++||.+|.+.|+.+.
T Consensus 56 QideeV~~LKe~IdaLN 72 (83)
T 1zke_A 56 QLSEEVERLKELINALN 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999998764
No 15
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=25.67 E-value=40 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCceeec
Q 034452 45 ALVGTLRAAKKRKFLTYD 62 (94)
Q Consensus 45 ~LVGtL~~ArK~~lV~Fe 62 (94)
++--.+..+|++|.++|+
T Consensus 10 ~~k~Li~~gK~~G~lTy~ 27 (72)
T 2k6x_A 10 RIKKLISLGKKKGYITYE 27 (72)
T ss_dssp HHHHHHHHHHHHSSCBHH
T ss_pred HHHHHHHHHhHcCCccHH
Confidence 444556689999999964
No 16
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=22.72 E-value=61 Score=25.05 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCC-CCCCceeeeeeccccccchhhHHHHHHHHHHHHHhcC----ceeecceeecccc-------cCc
Q 034452 6 EVERLKEEIQRLGKI-QPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRK----FLTYDGELLLQGV-------HDN 73 (94)
Q Consensus 6 Ei~~L~~~I~~~G~~-~~dG~~~V~FG~LF~~~~~~~i~e~LVGtL~~ArK~~----lV~FeGEmL~Qg~-------dD~ 73 (94)
|+..-++.|-++|.. -.||....|+|- |..+.|.|++|.+.| ++-=|+..++||. .+.
T Consensus 103 ~~~~a~~~I~~~~~~~I~~g~~ILTh~~----------S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~g 172 (315)
T 3ecs_A 103 RISLSRNKIADLCHTFIKDGATILTHAY----------SRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLN 172 (315)
T ss_dssp HHTTHHHHHHHHHGGGCCTTEEEEECSC----------CHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEcCC----------cHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcC
Confidence 344445556666643 478888888862 468899999998764 4445666677774 356
Q ss_pred eEEEecCC
Q 034452 74 VEITLKPP 81 (94)
Q Consensus 74 V~I~Ll~~ 81 (94)
+++||..+
T Consensus 173 I~vtli~D 180 (315)
T 3ecs_A 173 VPVTVVLD 180 (315)
T ss_dssp CCEEEECG
T ss_pred CCEEEEeh
Confidence 77776654
No 17
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=20.93 E-value=24 Score=25.99 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=27.8
Q ss_pred eeeeeeccccccchhhHHHHHHH----HHHHHHhcCceeecce---eecccccCceEEE
Q 034452 26 YKVTFGVLFHDDRCANIFEALVG----TLRAAKKRKFLTYDGE---LLLQGVHDNVEIT 77 (94)
Q Consensus 26 ~~V~FG~LF~~~~~~~i~e~LVG----tL~~ArK~~lV~FeGE---mL~Qg~dD~V~I~ 77 (94)
+..++..-|+-++.....+.+.- -+. |-+|++.+.|+ .+|||++..+.+.
T Consensus 227 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~v~--R~KG~~~~~~~~~~~~~~gv~~~~~~~ 283 (318)
T 1nij_A 227 IVVELDYPVDISEVSRVMENLLLESADKLL--RYKGMLWIDGEPNRLLFQGVQRLYSAD 283 (318)
T ss_dssp EEEEESSCBCHHHHHHHHHHHHHHTTTTEE--EEEEEECBTTCSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCCEE--EeeeEEEeCCCCcEEEEECCccEEecc
Confidence 44555666653333333333321 122 45589988764 6789988766643
No 18
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=20.58 E-value=1.6e+02 Score=20.58 Aligned_cols=50 Identities=6% Similarity=0.002 Sum_probs=31.3
Q ss_pred HHHHHHHhcCC-CCCC---Cceeeeeeccccc-cchhhHHHHHHHHHHHHHhcCc
Q 034452 9 RLKEEIQRLGK-IQPD---GSYKVTFGVLFHD-DRCANIFEALVGTLRAAKKRKF 58 (94)
Q Consensus 9 ~L~~~I~~~G~-~~~d---G~~~V~FG~LF~~-~~~~~i~e~LVGtL~~ArK~~l 58 (94)
...+.++++|- +|.- .+.+-+.|.++.+ ..-....+-+-|+-.+|+++|+
T Consensus 21 rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~ 75 (342)
T 1jx6_A 21 LTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNI 75 (342)
T ss_dssp HHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCC
Confidence 45677889995 3422 3345678888764 1112223446688889999994
No 19
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=20.20 E-value=99 Score=20.62 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHh-cCceeecceeecccccC
Q 034452 43 FEALVGTLRAAKK-RKFLTYDGELLLQGVHD 72 (94)
Q Consensus 43 ~e~LVGtL~~ArK-~~lV~FeGEmL~Qg~dD 72 (94)
.|.+.--|.++++ .|+.-|+-.-||.|++-
T Consensus 77 ~eNI~~FL~a~~~~~g~~lF~t~DL~e~kn~ 107 (126)
T 2l3g_A 77 LSNIREFLRGCGASLRLETFDANDLYQGQNF 107 (126)
T ss_dssp HHHHHHHHHHHHHTSCCCCCCHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHhCCCH
Confidence 5566667889999 99988998889888764
Done!