Query 034452
Match_columns 94
No_of_seqs 101 out of 110
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 04:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034452.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034452hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2amya1 c.108.1.10 (A:4-246) P 34.7 8.5 0.00062 23.4 1.7 29 31-61 12-40 (243)
2 d2fx0a2 a.121.1.1 (A:77-198) H 31.8 14 0.001 24.3 2.4 25 39-63 46-70 (122)
3 d1u61a_ a.149.1.1 (A:) Hypothe 28.2 11 0.00081 23.6 1.4 15 37-51 92-106 (127)
4 d1akya2 g.41.2.1 (A:131-168) M 28.0 6.9 0.0005 20.7 0.3 19 54-72 20-38 (38)
5 d1t5oa_ c.124.1.5 (A:) Putativ 27.8 30 0.0022 24.8 4.0 62 3-69 124-193 (340)
6 d1qz9a_ c.67.1.3 (A:) Kynureni 26.1 41 0.003 22.5 4.3 45 9-56 353-400 (404)
7 d1x41a1 a.4.1.1 (A:8-54) Trans 25.0 30 0.0022 18.0 2.7 17 4-20 6-22 (47)
8 d2fuea1 c.108.1.10 (A:13-256) 22.6 19 0.0014 21.6 1.7 28 31-60 10-37 (244)
9 d1e4cp_ c.74.1.1 (P:) L-fuculo 22.3 54 0.0039 20.7 4.1 34 3-36 6-40 (206)
10 d1zkea1 a.30.6.1 (A:1-79) Hypo 21.0 23 0.0016 21.6 1.8 17 2-18 54-70 (79)
No 1
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.68 E-value=8.5 Score=23.42 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=22.7
Q ss_pred eccccccchhhHHHHHHHHHHHHHhcCceee
Q 034452 31 GVLFHDDRCANIFEALVGTLRAAKKRKFLTY 61 (94)
Q Consensus 31 G~LF~~~~~~~i~e~LVGtL~~ArK~~lV~F 61 (94)
|.|.++. ..|+++..-.|+++++.|.+-+
T Consensus 12 GTLl~~~--~~i~~~~~~al~~l~~~g~~~i 40 (243)
T d2amya1 12 GTLTAPR--QKITKEMDDFLQKLRQKIKIGV 40 (243)
T ss_dssp TTTBCTT--SCCCHHHHHHHHHHTTTSEEEE
T ss_pred CCeeCCC--CcCCHHHHHHHHHHHcCCCEEE
Confidence 6677665 7789999999999988886543
No 2
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=31.82 E-value=14 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHhcCceeecc
Q 034452 39 CANIFEALVGTLRAAKKRKFLTYDG 63 (94)
Q Consensus 39 ~~~i~e~LVGtL~~ArK~~lV~FeG 63 (94)
.--+|+.|--+|.+.||+|+.+|..
T Consensus 46 ~~~~~eqLr~iL~eg~eQgvfhF~S 70 (122)
T d2fx0a2 46 FIGSFEQLKEILQEGEKQGVFHFFS 70 (122)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCCSC
T ss_pred HhhhHHHHHHHHHHHHhcCeeEeee
Confidence 3567999999999999999999963
No 3
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=28.15 E-value=11 Score=23.59 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=12.5
Q ss_pred cchhhHHHHHHHHHH
Q 034452 37 DRCANIFEALVGTLR 51 (94)
Q Consensus 37 ~~~~~i~e~LVGtL~ 51 (94)
|+.++.||+|+|.|-
T Consensus 92 y~lad~fEAliGalY 106 (127)
T d1u61a_ 92 YRHSTAFEALIGYHH 106 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHH
Confidence 467999999999763
No 4
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.96 E-value=6.9 Score=20.67 Aligned_cols=19 Identities=32% Similarity=0.263 Sum_probs=15.8
Q ss_pred HhcCceeecceeecccccC
Q 034452 54 KKRKFLTYDGELLLQGVHD 72 (94)
Q Consensus 54 rK~~lV~FeGEmL~Qg~dD 72 (94)
|+-|+=|.-|+-|.|+.||
T Consensus 20 k~~g~CD~cg~~L~qR~DD 38 (38)
T d1akya2 20 KEDMKDDVTGEALVQRSDD 38 (38)
T ss_dssp SSTTBCTTTCCBCBCCTTC
T ss_pred CcCCccCCCCCEeeecCCC
Confidence 6677788889999998877
No 5
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.75 E-value=30 Score=24.82 Aligned_cols=62 Identities=24% Similarity=0.377 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCCceeeee---eccccccchhhHHHHHHHHHHHHHhcCc----eeecceeeccc
Q 034452 3 VEEEVERLKEEIQRLGK-IQPDGSYKVTF---GVLFHDDRCANIFEALVGTLRAAKKRKF----LTYDGELLLQG 69 (94)
Q Consensus 3 V~~Ei~~L~~~I~~~G~-~~~dG~~~V~F---G~LF~~~~~~~i~e~LVGtL~~ArK~~l----V~FeGEmL~Qg 69 (94)
+.+|..+-|+.|-++|. .-.||....|+ |.|-... +....|.+++|+++|. +-=|+...+||
T Consensus 124 i~~e~~~a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~-----~gta~~~i~~a~~~gk~~~V~v~EsrP~~qG 193 (340)
T d1t5oa_ 124 LAEEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVD-----WGTALGVVRSAVEQGKEIRVIACETRPLNQG 193 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSS-----SCSHHHHHHHHHHTTCCCEEEEECCTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCchhhhhh-----hhhHHHHHHHhhhCCccceEEEEeccCccCc
Confidence 44667778888888885 46889999999 4444322 3356899999988652 22344455555
No 6
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}
Probab=26.06 E-value=41 Score=22.49 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHhcCC---CCCCCceeeeeeccccccchhhHHHHHHHHHHHHHhc
Q 034452 9 RLKEEIQRLGK---IQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKR 56 (94)
Q Consensus 9 ~L~~~I~~~G~---~~~dG~~~V~FG~LF~~~~~~~i~e~LVGtL~~ArK~ 56 (94)
.+++.+.+.|- ...+|-+.|.||.+|++. ..| |.++..|+..=++
T Consensus 353 ~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~--~di-d~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 353 AVIQALIDRGVIGDYREPRIMRFGFTPLYTTF--TEV-WDAVQILGEILDR 400 (404)
T ss_dssp HHHHHHHTTTEECEEETTTEEEEECCTTTCCH--HHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeecCCCeEEEECCCCCCCH--HHH-HHHHHHHHHHHHh
Confidence 35555666552 234677899999998864 554 7778777764433
No 7
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.05 E-value=30 Score=17.99 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcCCC
Q 034452 4 EEEVERLKEEIQRLGKI 20 (94)
Q Consensus 4 ~~Ei~~L~~~I~~~G~~ 20 (94)
.+|-..|.+.|+.+|..
T Consensus 6 ~eEd~~L~~~v~~~G~~ 22 (47)
T d1x41a1 6 AQEEMALLEAVMDCGFG 22 (47)
T ss_dssp HHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHCCc
Confidence 46888999999999864
No 8
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.64 E-value=19 Score=21.59 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=20.1
Q ss_pred eccccccchhhHHHHHHHHHHHHHhcCcee
Q 034452 31 GVLFHDDRCANIFEALVGTLRAAKKRKFLT 60 (94)
Q Consensus 31 G~LF~~~~~~~i~e~LVGtL~~ArK~~lV~ 60 (94)
|.|.++. ..|++...=+|.+++++|.+-
T Consensus 10 GTLl~~~--~~is~~~~~~i~~l~~~g~~~ 37 (244)
T d2fuea1 10 GTLTPAR--QKIDPEVAAFLQKLRSRVQIG 37 (244)
T ss_dssp TTTBSTT--SCCCHHHHHHHHHHTTTSEEE
T ss_pred cCccCCC--CcCCHHHHHHHHHHHhCCCEE
Confidence 5666655 567778888888888888543
No 9
>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Escherichia coli [TaxId: 562]}
Probab=22.26 E-value=54 Score=20.72 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCCceeeeeeccccc
Q 034452 3 VEEEVERLKEEIQRLGK-IQPDGSYKVTFGVLFHD 36 (94)
Q Consensus 3 V~~Ei~~L~~~I~~~G~-~~~dG~~~V~FG~LF~~ 36 (94)
+.+||-+.|..+.+.|- ....|.++++.+.-|=+
T Consensus 6 l~~~l~~~~r~l~~~Gl~~g~~GniS~R~~d~~lI 40 (206)
T d1e4cp_ 6 LARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLI 40 (206)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEeCCcEEE
Confidence 45778888888888885 45679999988766543
No 10
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=20.97 E-value=23 Score=21.62 Aligned_cols=17 Identities=59% Similarity=0.747 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHhcC
Q 034452 2 NVEEEVERLKEEIQRLG 18 (94)
Q Consensus 2 ~V~~Ei~~L~~~I~~~G 18 (94)
++++||..|.+.|..+.
T Consensus 54 qid~ev~kLK~~IdaLN 70 (79)
T d1zkea1 54 QLSEEVERLKELINALN 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999998763
Done!