BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034454
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 3 GGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 62
G N G D+A+FE G+ +VG + + Q ANP A++LSS +ML HL +A R+ AV
Sbjct: 259 GANFGRDYAVFEPGSR--HVGLD-IKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAV 315
Query: 63 KRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
I+EGK T+D+GGSS+T + + +I L
Sbjct: 316 HETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 GGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 62
G N G D+A+FE G+ +VG + + Q ANP A +LSS + L HL +A R+ AV
Sbjct: 259 GANFGRDYAVFEPGSR--HVGLD-IKGQNVANPTAXILSSTLXLNHLGLNEYATRISKAV 315
Query: 63 KRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
I+EGK T+D+GGSS+T + + +I L
Sbjct: 316 HETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 61
P N+G +IFE A G+ + + Q KANP ALLLSS MML H+ + AD+++ A
Sbjct: 266 PSANIGHKISIFE--AVHGSAPD--IAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNA 321
Query: 62 VKRVISEG-KCRTKDLGGSSTTQEIVDAVIAAL 93
V I+ G + RT DL G++TT +AVI L
Sbjct: 322 VLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 2 PGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLET 60
P GN+G A+FE SA ++ + + ANP A +LS+AMML +L A R+E
Sbjct: 244 PSGNIGDTTAVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLDYLGEKEAAKRVEK 298
Query: 61 AVKRVISEGKCRTKDLGGSSTTQEIVDAVIAALE 94
AV V+ G RT DLGG +TT+ +AV+ AL+
Sbjct: 299 AVDLVLERGP-RTPDLGGDATTEAFTEAVVEALK 331
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 2 PGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLET 60
P GN+G A+FE SA ++ + + ANP A +LS+AMML +L A R+E
Sbjct: 245 PSGNIGDTTAVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLDYLGEKEAAKRVEK 299
Query: 61 AVKRVISEGKCRTKDLGGSSTTQEIVDAVIAALE 94
AV V+ G RT DLGG +TT+ +AV+ AL+
Sbjct: 300 AVDLVLERGP-RTPDLGGDATTEAFTEAVVEALK 332
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 2 PGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLET 60
P GN+G A+FE SA ++ + + ANP A +LS+AMML +L A R+E
Sbjct: 245 PSGNIGDTTAVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLDYLGEKEAAKRVEK 299
Query: 61 AVKRVISEGKCRTKDLGGSSTTQEIVDAVIAALE 94
AV V+ G T DLGG +TT+ +AV+ AL+
Sbjct: 300 AVDLVLERGPM-TPDLGGDATTEAFTEAVVEALK 332
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLE 59
+P NVG + + E SA ++ + ANPVA S A+ML + A +
Sbjct: 276 VPSANVGDNFVMSEPVHGSAPDIAGRGI-----ANPVATFRSVALMLEFMGHQDAAADIY 330
Query: 60 TAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
TAV +V++EGK T DLGG S T EI DAV+A +
Sbjct: 331 TAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANI 364
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G A++E SA ++ Q KANP+A +LS AMMLRH L +A R+
Sbjct: 262 LPSASLGEGRAMYEPIHGSAPDIAG-----QDKANPLATILSVAMMLRHSLNAEPWAQRV 316
Query: 59 ETAVKRVISEGKCRTKDLGGSST----TQEIVDAVIAAL 93
E AV+RV+ +G RT D+ T T+ + AV+ AL
Sbjct: 317 EAAVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNAL 354
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 2 PGGNVGADHAIFE--QGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLE 59
P N+G + AIFE G++ G + NP A+LLS+ MMLR+L+ + AD +E
Sbjct: 265 PSANIGNEVAIFEAVHGSAPKYAGKNVI------NPTAVLLSAVMMLRYLEEFATADLIE 318
Query: 60 TAVKRVISEGKCRTKDLGGS---STTQEIVDAVIAAL 93
A+ + EG+ T D+ G + T E +A+I L
Sbjct: 319 NALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNL 355
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 61
PG N+G ++A+FE A+ G + + Q KANP +++LS+ MMLRH+ + AD +
Sbjct: 324 PGANIGDEYALFE--ATHGTAPD--IAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKG 379
Query: 62 VKRVISEGKCRTKDL 76
++ I+ K TKD
Sbjct: 380 MEGAIN-AKTVTKDF 393
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 61
P N+G +IFE A G+ + + Q KANP ALLLSS L H + AD+++ A
Sbjct: 266 PSANIGHKISIFE--AVHGSAPD--IAGQDKANPTALLLSSVXXLNHXGLTNHADQIQNA 321
Query: 62 VKRVISEG-KCRTKDLGGSSTTQEIVDAVIAAL 93
V I+ G + RT DL G++TT +AVI L
Sbjct: 322 VLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 61
PG N+ HAIFE A+ G + + Q KANP +L+LS+ MML HL + A + A
Sbjct: 337 PGANLSDTHAIFE--ATHGTAPD--IAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAA 392
Query: 62 VKRVISEGKCRTKDL 76
+ I+ G+ T DL
Sbjct: 393 MNATIAAGEV-TGDL 406
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 33 ANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGGSSTTQ----EIVD 87
ANP+A +LS+AM+LR+ L ADR+E AVK V+ +G RT D+ Q + D
Sbjct: 299 ANPLATILSAAMLLRYSLNRAEQADRIERAVKTVLEQG-YRTGDIATPGCRQVGTAAMGD 357
Query: 88 AVIAAL 93
AV+AAL
Sbjct: 358 AVVAAL 363
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 2 PGGNVGADHAIFE--QGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADR-- 57
P N+G A+FE GA+ G + NP A LLS +MM + S DR
Sbjct: 241 PSANIGDKKALFEPVHGAAFDIAG------KNIGNPTAFLLSVSMMYERMYELSNDDRYI 294
Query: 58 -----LETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
LE A+ V E K T D+GG++TT ++++ + L
Sbjct: 295 KASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKL 335
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 33 ANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL----GGSSTTQEIVD 87
ANP+A +LS+AMMLR+ A +E AV++V++EG RT D+ G +T E+ D
Sbjct: 312 ANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG-YRTADIAKPGGKYVSTTEMTD 370
Query: 88 AVIAAL 93
V AA+
Sbjct: 371 EVKAAV 376
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 322 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 372
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 33 ANPVALLLSSAMMLRHL-----QFPSFADRLETAVKRVISEGKCRTKDLGGSSTTQEIVD 87
ANP+A++ S A+ML L ++ D + A++RVI++G T D+GG+ +TQ++
Sbjct: 296 ANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSV-TPDMGGTLSTQQVGA 354
Query: 88 AV 89
A+
Sbjct: 355 AI 356
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 2 PGGNVGADHAIFE--QGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLE 59
PG N+G +FE G++ G Q K NP A +L+ A+M ++ + ++ ++
Sbjct: 318 PGSNIGDGIGVFEPVHGSAPKYAG------QNKVNPTAEILTGALMFEYIGWKDASEMIK 371
Query: 60 TAVKRVISEGKCRT---KDLGGSST-TQEIVDAVIAALE 94
AV+ IS G + +GG+ T+E +AV+ L+
Sbjct: 372 KAVEMTISSGIVTYDIHRHMGGTKVGTREFAEAVVENLQ 410
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 2 PGGNVGADHAIFE--QGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFAD 56
PG N+G + A+FE G + G Q K NP +++LS+ MMLRH+ + AD
Sbjct: 324 PGANIGDECALFEATHGTAPAYAG------QDKVNPGSIILSAEMMLRHMGWTEAAD 374
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLE 59
+P + G + G SA ++ + + ANP+A +LS AMML H A ++E
Sbjct: 271 LPSASFGDKNLYEPAGGSAPDIAGKNI-----ANPIAQILSLAMMLEHSFGMVEEARKIE 325
Query: 60 TAVKRVISEGKCRTKDLG----GSSTTQEIVDAVIAALE 94
AV+ VI EG RT+D+ + +T ++ D + LE
Sbjct: 326 RAVELVIEEGY-RTRDIAEDPEKAVSTSQMGDLICKKLE 363
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V A +
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVTATV 344
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 255 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 309
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 310 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 342
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAAL 93
E AV + + E DLGGS+ T+ V+ L
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 344
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 260 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 314
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAVI 90
E AV + + E DLGGS+ T+ V+
Sbjct: 315 EDAVAKALLE--TPPPDLGGSAGTEAFTATVL 344
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 30 QKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL----GGSSTTQE 84
Q KANP+ +LS+A+MLR+ A +E AV V+ +G C T DL G +T E
Sbjct: 288 QGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDGYC-TGDLQVANGKVVSTIE 346
Query: 85 IVDAVIAAL 93
+ D +I L
Sbjct: 347 LTDRLIEKL 355
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAV 89
E AV + + E DLGGS+ T+ V
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATV 340
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 1 MPGGNVGADHAIFEQ-GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 58
+P ++G +FE SA ++ + + ANP A +LS+AMML H A ++
Sbjct: 257 LPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLEHAFGLVELARKV 311
Query: 59 ETAVKRVISEGKCRTKDLGGSSTTQEIVDAV 89
E AV + + E DLGGS+ T+ V
Sbjct: 312 EDAVAKALLE--TPPPDLGGSAGTEAFTATV 340
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 30 QKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL----GGSSTTQE 84
Q KANP+ +LS+A+MLR+ A +E AV V+ +G C T DL G +T E
Sbjct: 288 QGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDGYC-TGDLQVANGKVVSTIE 346
Query: 85 IVDAVIAAL 93
+ D +I L
Sbjct: 347 LTDRLIEKL 355
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 30 QKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL----GGSSTTQE 84
Q KANP+ +LS+A+MLR+ A +E AV V+ +G C T DL G +T E
Sbjct: 288 QGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDGYC-TGDLQVANGKVVSTIE 346
Query: 85 IVDAVIAAL 93
+ D +I L
Sbjct: 347 LTDRLIEKL 355
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 30 QKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGGSSTTQ 83
Q ANPVA +LS+A++LRH L+ A +E AV + +S+G + L S +Q
Sbjct: 302 QGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSDGYLTCELLPASERSQ 356
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 33 ANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGGSS--TTQEIVDAV 89
ANP+A +LS+A+ML++ + A +E A+ +++GK TKDL S T E+ D +
Sbjct: 293 ANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGK-MTKDLNAKSYLNTDEMGDCI 351
Query: 90 IAALE 94
+ L+
Sbjct: 352 LEILK 356
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 2 PGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 61
PG N+ A+FE A+ G K + NP + +LS+ MMLRHL + AD + +A
Sbjct: 334 PGANLSDSVAMFE--ATHGTA--PKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISA 389
Query: 62 VKRVISEGK 70
+++ I + +
Sbjct: 390 MEKSIKQKR 398
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 30 QKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGGSST 81
Q KANP+A +LS+AM+L++ L A R+E AV ++ G RT D+ + T
Sbjct: 330 QDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNG-FRTGDIYSAGT 381
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 16 GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTK 74
G SA ++ + + ANP+A +LS A++LR+ L A +E A+ R + EG RT
Sbjct: 284 GGSAPDIAGKNI-----ANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRTG 337
Query: 75 DL---GGSSTTQEIVDAV 89
DL + +T E+ D +
Sbjct: 338 DLARGAAAVSTDEMGDII 355
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 2 PGGNVGAD--HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLE 59
PG N+ + HAIFE A+ G K K NP +++LS ++L HL + AD +
Sbjct: 328 PGANINYETGHAIFE--ATHGTA--PKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVI 383
Query: 60 TAVKRVIS 67
++++ I+
Sbjct: 384 KSMEKTIA 391
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 16 GASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTK 74
G SA ++ + + ANP+A +LS A++LR+ L A +E A+ R + EG RT
Sbjct: 284 GGSAPDIAGKNI-----ANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRTG 337
Query: 75 DL---GGSSTTQEIVDAV 89
DL + +T E+ D +
Sbjct: 338 DLARGAAAVSTDEMGDII 355
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 30 QKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEG 69
Q ANPVA +LS+A++LRH L+ A +E AV + ++ G
Sbjct: 302 QGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALNSG 342
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 33 ANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEG 69
ANP+A +LS+A+MLRH L+ A +E AV + ++ G
Sbjct: 305 ANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSG 342
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 3 GGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 62
G N+G + +FE A G K + ANP ++ + +MLR + + AD +E A+
Sbjct: 316 GANIGDEGGMFE--AIHGTA--PKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAI 371
Query: 63 KRVISEGKCRTKDLG-----GSSTTQEIVDAVIAALE 94
I + K T+D+ + T+E D +I ++
Sbjct: 372 NMAIRDKKV-TQDIARFMGVKALGTKEYADELIKIMD 407
>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|B Chain B, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|C Chain C, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|D Chain D, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|E Chain E, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|F Chain F, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|G Chain G, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|H Chain H, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|I Chain I, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|J Chain J, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|K Chain K, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|L Chain L, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|M Chain M, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|N Chain N, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
Length = 448
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 NVGNEKLVEQKKANPVALLLSSAMMLRHLQ 50
NV +E L QK+ NP++LL A + HL
Sbjct: 121 NVSDENLKLQKEYNPISLLRQIASGVAHLH 150
>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin
pdb|3LJ0|B Chain B, Ire1 Complexed With Adp And Quercetin
pdb|3LJ1|A Chain A, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ1|B Chain B, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ2|A Chain A, Ire1 Complexed With Jak Inhibitor I
pdb|3LJ2|B Chain B, Ire1 Complexed With Jak Inhibitor I
Length = 434
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 NVGNEKLVEQKKANPVALLLSSAMMLRHLQ 50
NV +E L QK+ NP++LL A + HL
Sbjct: 103 NVSDENLKLQKEYNPISLLRQIASGVAHLH 132
>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|B Chain B, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|C Chain C, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|D Chain D, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|E Chain E, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|F Chain F, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|G Chain G, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|H Chain H, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|I Chain I, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|J Chain J, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|K Chain K, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|L Chain L, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|M Chain M, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|N Chain N, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3SDM|A Chain A, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|B Chain B, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|C Chain C, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|D Chain D, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|E Chain E, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|F Chain F, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|G Chain G, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
Length = 448
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 NVGNEKLVEQKKANPVALLLSSAMMLRHLQ 50
NV +E L QK+ NP++LL A + HL
Sbjct: 121 NVSDENLKLQKEYNPISLLRQIASGVAHLH 150
>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
pdb|2RIO|B Chain B, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
Length = 434
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 21 NVGNEKLVEQKKANPVALLLSSAMMLRHLQ 50
NV +E L QK+ NP++LL A + HL
Sbjct: 103 NVSDENLKLQKEYNPISLLRQIASGVAHLH 132
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 30 QKKANPVALLLSSAMMLRHLQFPSFADRLETAVK-RVISEGKCR--TKDLG 77
Q A+P A ++S A++L HL A R++ AV+ + + G R T D+G
Sbjct: 280 QGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLATRGSERLATSDVG 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,495,409
Number of Sequences: 62578
Number of extensions: 73806
Number of successful extensions: 205
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 61
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)