Query 034454
Match_columns 94
No_of_seqs 143 out of 1073
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 3E-36 6.5E-41 233.4 10.0 90 1-94 255-346 (348)
2 PRK08997 isocitrate dehydrogen 100.0 3.3E-36 7.1E-41 233.1 9.8 89 1-93 246-334 (334)
3 PRK14025 multifunctional 3-iso 100.0 1.5E-35 3.3E-40 229.1 9.9 88 1-93 243-330 (330)
4 KOG0785 Isocitrate dehydrogena 100.0 2.1E-35 4.6E-40 226.7 9.1 89 1-93 277-365 (365)
5 PLN00118 isocitrate dehydrogen 100.0 3.7E-35 8.1E-40 229.7 9.8 89 1-93 283-372 (372)
6 PLN00123 isocitrate dehydrogen 100.0 4.5E-35 9.7E-40 228.5 10.1 92 1-94 267-360 (360)
7 PRK08194 tartrate dehydrogenas 100.0 5.6E-35 1.2E-39 227.5 9.9 88 1-93 259-349 (352)
8 TIGR02089 TTC tartrate dehydro 100.0 6.9E-35 1.5E-39 226.9 9.6 88 1-93 262-352 (352)
9 TIGR00175 mito_nad_idh isocitr 100.0 1.8E-34 3.9E-39 223.2 9.5 90 1-93 244-333 (333)
10 PLN02329 3-isopropylmalate deh 100.0 5.7E-34 1.2E-38 225.2 9.7 89 1-94 308-402 (409)
11 TIGR02924 ICDH_alpha isocitrat 100.0 8.9E-34 1.9E-38 227.1 9.9 88 1-93 244-337 (473)
12 TIGR00169 leuB 3-isopropylmala 100.0 8.1E-34 1.8E-38 220.8 9.4 88 1-93 260-349 (349)
13 PRK09222 isocitrate dehydrogen 100.0 1.5E-33 3.2E-38 226.3 10.0 88 1-93 248-341 (482)
14 PRK06451 isocitrate dehydrogen 100.0 1.6E-33 3.4E-38 222.9 9.8 88 1-93 316-408 (412)
15 PRK07362 isocitrate dehydrogen 100.0 1.6E-33 3.4E-38 224.9 9.6 88 1-93 380-474 (474)
16 PRK07006 isocitrate dehydrogen 100.0 2.5E-33 5.4E-38 221.6 9.6 88 1-93 316-409 (409)
17 TIGR00183 prok_nadp_idh isocit 100.0 4.4E-33 9.5E-38 220.6 9.6 88 1-93 323-416 (416)
18 PRK00772 3-isopropylmalate deh 100.0 7.8E-33 1.7E-37 215.9 9.7 89 1-94 263-356 (358)
19 PF00180 Iso_dh: Isocitrate/is 100.0 3.8E-32 8.3E-37 210.8 4.9 84 1-89 259-348 (348)
20 PRK03437 3-isopropylmalate deh 100.0 4E-31 8.6E-36 205.4 9.3 83 1-93 259-344 (344)
21 PRK08299 isocitrate dehydrogen 100.0 4.7E-31 1E-35 208.3 9.6 89 1-94 289-399 (402)
22 TIGR02088 LEU3_arch isopropylm 100.0 1.1E-30 2.4E-35 201.5 8.8 85 1-90 238-322 (322)
23 KOG0784 Isocitrate dehydrogena 100.0 3.3E-30 7.1E-35 199.6 9.4 91 1-94 283-373 (375)
24 PLN00103 isocitrate dehydrogen 100.0 8.6E-29 1.9E-33 195.8 9.5 89 1-94 293-407 (410)
25 PTZ00435 isocitrate dehydrogen 100.0 1.3E-28 2.8E-33 195.0 9.8 88 1-93 292-406 (413)
26 TIGR00127 nadp_idh_euk isocitr 99.9 8.1E-28 1.8E-32 190.2 9.1 88 1-93 290-403 (409)
27 PLN00096 isocitrate dehydrogen 99.9 2E-26 4.3E-31 181.3 9.8 88 1-93 285-393 (393)
28 KOG0786 3-isopropylmalate dehy 99.9 5E-26 1.1E-30 172.7 8.6 88 1-93 264-358 (363)
29 PLN03065 isocitrate dehydrogen 99.9 1.1E-25 2.4E-30 180.7 9.5 89 1-94 360-474 (483)
30 COG0538 Icd Isocitrate dehydro 99.9 2.9E-24 6.3E-29 168.5 7.7 89 1-94 312-407 (407)
31 PF04166 PdxA: Pyridoxal phosp 97.9 8.8E-06 1.9E-10 62.8 2.8 25 21-45 273-297 (298)
32 PRK03371 pdxA 4-hydroxythreoni 97.8 1.3E-05 2.7E-10 62.7 3.1 28 20-47 297-324 (326)
33 PRK00232 pdxA 4-hydroxythreoni 97.8 1.2E-05 2.7E-10 62.8 3.0 30 20-49 298-327 (332)
34 PRK05312 pdxA 4-hydroxythreoni 97.8 1.5E-05 3.2E-10 62.6 3.0 30 20-49 303-332 (336)
35 PRK01909 pdxA 4-hydroxythreoni 97.8 1.5E-05 3.2E-10 62.4 3.0 30 20-49 294-323 (329)
36 PRK03743 pdxA 4-hydroxythreoni 97.8 1.5E-05 3.2E-10 62.4 3.0 29 20-48 298-326 (332)
37 PRK02746 pdxA 4-hydroxythreoni 97.8 1.9E-05 4.1E-10 62.2 3.0 30 20-49 311-340 (345)
38 TIGR00557 pdxA 4-hydroxythreon 97.8 1.9E-05 4.2E-10 61.5 3.0 28 20-47 291-318 (320)
39 PRK03946 pdxA 4-hydroxythreoni 97.7 2.2E-05 4.7E-10 60.9 3.0 30 20-49 274-304 (307)
40 COG1995 PdxA Pyridoxal phospha 97.7 2E-05 4.3E-10 61.7 2.7 29 20-48 297-325 (332)
41 KOG1526 NADP-dependent isocitr 94.7 0.076 1.6E-06 42.2 5.2 80 11-93 311-413 (422)
42 PF03971 IDH: Monomeric isocit 82.2 2.4 5.1E-05 36.4 4.4 66 9-77 570-648 (735)
43 TIGR00178 monomer_idh isocitra 81.8 3.3 7.2E-05 35.6 5.1 66 9-77 574-652 (741)
44 COG2838 Icd Monomeric isocitra 69.0 12 0.00026 31.9 5.1 66 9-77 576-654 (744)
45 PF03469 XH: XH domain; Inter 66.8 19 0.00041 25.0 5.0 41 53-93 73-125 (132)
46 KOG1671 Ubiquinol cytochrome c 66.3 3.5 7.6E-05 30.7 1.4 31 1-35 159-189 (210)
47 cd03470 Rieske_cytochrome_bc1 57.4 6.6 0.00014 26.5 1.4 23 9-35 83-105 (126)
48 PF14213 DUF4325: Domain of un 48.2 29 0.00062 20.9 3.1 40 54-93 2-42 (74)
49 PRK14700 recombination factor 46.5 39 0.00085 26.4 4.3 24 31-54 175-200 (300)
50 COG4779 FepG ABC-type enteroba 44.5 7.3 0.00016 30.9 -0.0 28 3-31 85-112 (346)
51 TIGR01416 Rieske_proteo ubiqui 43.9 12 0.00026 26.6 1.0 21 11-35 133-153 (174)
52 PF12002 MgsA_C: MgsA AAA+ ATP 42.0 23 0.0005 25.4 2.2 24 31-54 37-62 (168)
53 COG0723 QcrA Rieske Fe-S prote 36.6 24 0.00052 24.7 1.6 24 8-35 122-145 (177)
54 COG2256 MGS1 ATPase related to 35.6 66 0.0014 26.5 4.1 24 31-54 298-323 (436)
55 PRK11409 antitoxin YefM; Provi 31.9 93 0.002 19.4 3.6 35 41-76 47-81 (83)
56 PF14338 Mrr_N: Mrr N-terminal 28.2 61 0.0013 20.2 2.3 19 75-93 15-33 (92)
57 PRK13342 recombination factor 27.5 1.1E+02 0.0024 24.1 4.2 24 31-54 279-304 (413)
58 KOG0354 DEAD-box like helicase 27.4 25 0.00054 30.8 0.5 60 25-87 73-150 (746)
59 TIGR02364 dha_pts dihydroxyace 27.4 61 0.0013 21.8 2.3 35 52-86 42-78 (125)
60 PRK13690 hypothetical protein; 26.9 1.9E+02 0.0042 21.2 4.9 43 51-93 3-59 (184)
61 TIGR01501 MthylAspMutase methy 26.6 83 0.0018 21.5 2.9 30 62-91 21-50 (134)
62 PF04060 FeS: Putative Fe-S cl 26.4 49 0.0011 17.5 1.4 14 78-91 11-24 (35)
63 KOG1585 Protein required for f 25.8 1.1E+02 0.0025 23.9 3.8 33 38-70 73-106 (308)
64 TIGR00006 S-adenosyl-methyltra 25.5 2.3E+02 0.0051 22.0 5.5 43 42-92 146-188 (305)
65 TIGR02370 pyl_corrinoid methyl 24.7 88 0.0019 22.3 2.9 30 62-91 104-133 (197)
66 PF01349 Flavi_NS4B: Flaviviru 24.7 3.3E+02 0.007 20.9 6.3 45 32-77 107-162 (254)
67 PF07944 DUF1680: Putative gly 23.9 1.3E+02 0.0027 24.7 3.9 47 29-77 298-344 (520)
68 cd02071 MM_CoA_mut_B12_BD meth 23.8 1.1E+02 0.0023 19.9 2.9 20 71-90 28-47 (122)
69 PF11811 DUF3331: Domain of un 23.7 1.2E+02 0.0025 20.0 3.1 28 6-44 64-91 (96)
70 PF08769 Spo0A_C: Sporulation 23.5 1.8E+02 0.004 18.9 4.1 17 78-94 90-106 (106)
71 COG4990 Uncharacterized protei 23.1 59 0.0013 24.0 1.7 16 38-53 45-60 (195)
72 COG2144 Selenophosphate synthe 22.6 64 0.0014 25.6 1.9 21 28-49 211-231 (324)
73 PF04034 DUF367: Domain of unk 22.4 1.1E+02 0.0024 21.0 2.9 25 36-60 66-90 (127)
74 PF00531 Death: Death domain; 22.4 81 0.0018 18.4 2.0 27 35-61 56-82 (83)
75 TIGR00640 acid_CoA_mut_C methy 21.6 1.2E+02 0.0026 20.4 2.9 20 71-90 31-50 (132)
76 PRK12425 fumarate hydratase; P 21.3 4.6E+02 0.01 21.4 6.8 30 40-69 51-82 (464)
77 PF13179 DUF4006: Family of un 21.2 1.4E+02 0.0031 18.4 2.9 29 36-64 14-43 (66)
78 COG3376 HoxN High-affinity nic 20.8 2.1E+02 0.0045 22.9 4.4 34 37-70 46-84 (342)
79 COG0696 GpmI Phosphoglyceromut 20.4 86 0.0019 26.4 2.3 29 65-93 356-384 (509)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-36 Score=233.42 Aligned_cols=90 Identities=44% Similarity=0.649 Sum_probs=85.9
Q ss_pred CCccccCCC--cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 034454 1 MPGGNVGAD--HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG 78 (94)
Q Consensus 1 ~psanig~~--~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg 78 (94)
+||+|+|++ ++||||+ |||||||||||||||+|+|||++|||+|+|..++|++|++||+++|+++.++|+||||
T Consensus 255 ~PSAnig~~~~~~lfEPv----HGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~~~g~~T~Dlgg 330 (348)
T COG0473 255 APSANLGDERGPALFEPV----HGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLAEGGIRTPDLGG 330 (348)
T ss_pred CccCccCCCCCCceeecC----CCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHcCCCCCcccCC
Confidence 699999997 9999999 9999999999999999999999999999999999999999999999974489999999
Q ss_pred CCCHHHHHHHHHHHhC
Q 034454 79 SSTTQEIVDAVIAALE 94 (94)
Q Consensus 79 ~~~T~~~~~~v~~~l~ 94 (94)
+.+|.||+++|++.|.
T Consensus 331 ~~~T~e~~d~I~~~l~ 346 (348)
T COG0473 331 NATTSEVGDAIAKALA 346 (348)
T ss_pred CccHHHHHHHHHHHHh
Confidence 9999999999999873
No 2
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-36 Score=233.07 Aligned_cols=89 Identities=37% Similarity=0.601 Sum_probs=86.4
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|||++++||||+ |||||||||||||||+|+|||++|||+|||+.++|++|++||++++++|+.+|+||||++
T Consensus 246 ~psanig~~~a~FEp~----HGSAPdIAGk~iANP~a~IlS~amML~~lG~~~~A~~i~~AV~~vl~~G~~~T~DlGG~a 321 (334)
T PRK08997 246 APGANIGRDAAIFEAV----HGSAPDIAGKNLANPTSVILAAIQMLEYLGMPDKAERIRKAIVAVIEAGDRTTRDLGGTH 321 (334)
T ss_pred CcceeECCCceEEECC----CCchhhhCCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcCCccCcccCCCc
Confidence 5999999999999999 999999999999999999999999999999999999999999999999977899999999
Q ss_pred CHHHHHHHHHHHh
Q 034454 81 TTQEIVDAVIAAL 93 (94)
Q Consensus 81 ~T~~~~~~v~~~l 93 (94)
+|+||+++|+++|
T Consensus 322 ~T~e~~~av~~~l 334 (334)
T PRK08997 322 GTTDFTQAVIDRL 334 (334)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999875
No 3
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-35 Score=229.09 Aligned_cols=88 Identities=33% Similarity=0.520 Sum_probs=85.7
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|+|++++||||+ |||||||||||+|||+|+|+|++|||+|||+.++|++|++||++++++| ++|+||||++
T Consensus 243 ~psanig~~~a~FEp~----HGSAPdiAGk~iANP~a~IlS~ammL~~lG~~~~A~~I~~Av~~vl~~g-~~T~DlGG~~ 317 (330)
T PRK14025 243 APSANIGDKYGLFEPV----HGSAPDIAGKGIANPTATILTAVLMLRHLGENEEADKVEKALEEVLALG-LTTPDLGGNL 317 (330)
T ss_pred ccceeeCCCcceeEcC----CCCchhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcccCCCc
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 7899999999
Q ss_pred CHHHHHHHHHHHh
Q 034454 81 TTQEIVDAVIAAL 93 (94)
Q Consensus 81 ~T~~~~~~v~~~l 93 (94)
+|+||+++|+++|
T Consensus 318 ~T~e~~~av~~~~ 330 (330)
T PRK14025 318 STMEMAEEVAKRV 330 (330)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999999875
No 4
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=226.71 Aligned_cols=89 Identities=46% Similarity=0.663 Sum_probs=87.2
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|||+..++||++ |||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++|+++|+||||++
T Consensus 277 tPS~NiG~g~~~~e~v----HGsAPDIAGkdlANPtAlllS~vmMLrhm~l~~~A~~I~~Av~~ti~eg~~rT~DLGGka 352 (365)
T KOG0785|consen 277 TPSANIGDGIVIFEAV----HGSAPDIAGKDLANPTALLLSAVMMLRHMGLNDQADQIESAVFKTIAEGKIRTPDLGGKA 352 (365)
T ss_pred CCCcccCCCeeeeecc----cCCCcccccCCcCCcHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhccCccCcccCCCc
Confidence 5999999889999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh
Q 034454 81 TTQEIVDAVIAAL 93 (94)
Q Consensus 81 ~T~~~~~~v~~~l 93 (94)
+|+||+++|+++|
T Consensus 353 ~~seft~aVc~~l 365 (365)
T KOG0785|consen 353 TTSEFTDAVCDRL 365 (365)
T ss_pred cchHHHHHHHhcC
Confidence 9999999999986
No 5
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3.7e-35 Score=229.74 Aligned_cols=89 Identities=42% Similarity=0.612 Sum_probs=86.4
Q ss_pred CCccccCCC-cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCC
Q 034454 1 MPGGNVGAD-HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGS 79 (94)
Q Consensus 1 ~psanig~~-~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~ 79 (94)
+||+|||++ .+||||+ |||||||||||||||+|||||++|||+|||+.++|++|++||.+++++|+++|+||||+
T Consensus 283 apSanig~~~~a~FEpv----HGSAPdIAGk~iANP~A~IlS~amML~~lG~~~~A~~I~~Av~~~l~~G~~~T~DlGG~ 358 (372)
T PLN00118 283 TPSCNIGENGLALAEAV----HGSAPDIAGKNLANPTALLLSAVMMLRHLKLNEQAEQIHNAILNTIAEGKYRTADLGGS 358 (372)
T ss_pred CcceeecCCCCeEEECC----CCChhhhCCCCCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCCC
Confidence 599999988 7999999 99999999999999999999999999999999999999999999999998899999999
Q ss_pred CCHHHHHHHHHHHh
Q 034454 80 STTQEIVDAVIAAL 93 (94)
Q Consensus 80 ~~T~~~~~~v~~~l 93 (94)
++|+||+++|+++|
T Consensus 359 ~sT~e~~dav~~~l 372 (372)
T PLN00118 359 STTTDFTKAICDHL 372 (372)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999876
No 6
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.5e-35 Score=228.49 Aligned_cols=92 Identities=89% Similarity=1.196 Sum_probs=88.0
Q ss_pred CCccccCCCcceeeccccCCCCCc--ccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGN--EKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsa--pdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg 78 (94)
+||+|||++++||||++. |||| |||||||||||+|||+|++|||+|||+.++|++|++||++++++|+++|+||||
T Consensus 267 ~pSanig~~~a~FEpvh~--hGSA~~PdIAGk~iANP~a~IlS~amML~~lG~~~~A~~I~~AV~~~l~~G~~~T~DlGG 344 (360)
T PLN00123 267 MPGGNVGADHAVFEQGAS--AGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGKYRTKDLGG 344 (360)
T ss_pred cceEeeCCCceEEEeccc--CCCcCCccccCCCccChHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCC
Confidence 599999999999999854 6999 999999999999999999999999999999999999999999999789999999
Q ss_pred CCCHHHHHHHHHHHhC
Q 034454 79 SSTTQEIVDAVIAALE 94 (94)
Q Consensus 79 ~~~T~~~~~~v~~~l~ 94 (94)
+++|+||+++|+++|+
T Consensus 345 ~~sT~e~~~ai~~~l~ 360 (360)
T PLN00123 345 SSTTQEVVDAVIANLD 360 (360)
T ss_pred CcCHHHHHHHHHHhhC
Confidence 9999999999999874
No 7
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-35 Score=227.45 Aligned_cols=88 Identities=26% Similarity=0.506 Sum_probs=84.6
Q ss_pred CCccccCCC--c-ceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC
Q 034454 1 MPGGNVGAD--H-AIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG 77 (94)
Q Consensus 1 ~psanig~~--~-a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg 77 (94)
+||+|||++ + +||||+ |||||||||||||||+|+|||++|||+|||++++|++|++||++++++| ++|+|||
T Consensus 259 ~pSanig~~~~~~alFEp~----HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~i~~Av~~~l~~g-~~T~DlG 333 (352)
T PRK08194 259 APAANINVNGKYPSMFEPV----HGSAPDIAGKGIANPIGQIWTAKLMLDHFGEEELGSHLLDVIEDVTEDG-IKTPDIG 333 (352)
T ss_pred cceeeecCCCCcceEEECC----CCCchhhCCCCcCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcC-CCcCcCC
Confidence 599999954 4 999999 9999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 034454 78 GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 g~~~T~~~~~~v~~~l 93 (94)
|+++|+||+++|+++|
T Consensus 334 G~~~T~e~~~ai~~~l 349 (352)
T PRK08194 334 GRATTDEVTDEIISRL 349 (352)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999999987
No 8
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=6.9e-35 Score=226.94 Aligned_cols=88 Identities=32% Similarity=0.520 Sum_probs=84.2
Q ss_pred CCccccCCC-c--ceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC
Q 034454 1 MPGGNVGAD-H--AIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG 77 (94)
Q Consensus 1 ~psanig~~-~--a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg 77 (94)
+||+|||++ . +||||+ |||||||||||||||+|+|||++|||+|||++++|++|++||++++++| ++|+|||
T Consensus 262 ~psanig~~~~~~a~fEp~----HGSAPdiAGk~iANP~a~Ils~amML~~lg~~~~A~~I~~Av~~~l~~g-~~T~DlG 336 (352)
T TIGR02089 262 APSANINPEGKFPSMFEPV----HGSAPDIAGKGIANPIGAIWTAAMMLEHLGEKEAGAKIMDAIERVTAAG-ILTPDVG 336 (352)
T ss_pred cceEEecCCCCcceeeecC----CCCchhhcCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcC-CccCCCC
Confidence 599999964 3 899999 9999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 034454 78 GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 g~~~T~~~~~~v~~~l 93 (94)
|+++|+||+++|+++|
T Consensus 337 G~~sT~e~~~ai~~~l 352 (352)
T TIGR02089 337 GKATTSEVTEAVCNAL 352 (352)
T ss_pred CCcCHHHHHHHHHhhC
Confidence 9999999999999875
No 9
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=1.8e-34 Score=223.20 Aligned_cols=90 Identities=50% Similarity=0.760 Sum_probs=86.3
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|+|++++||||+ + |||||||||||+|||+|+|+|++|||+|||++++|++|++||.+++++|+++|+||||++
T Consensus 244 ~pSanig~~~a~fEp~-~--hGSApdiaGk~iaNP~a~Ils~ammL~~lG~~~~a~~i~~Av~~~l~~G~~~T~DlGG~~ 320 (333)
T TIGR00175 244 VPGANIGRDYAVFEPG-V--RHTGPDIAGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGKNRTKDLGGTA 320 (333)
T ss_pred CceeEEcCCCceEecc-C--CCCchhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCccChhcCCCc
Confidence 5999999999999995 3 799999999999999999999999999999999999999999999999978999999999
Q ss_pred CHHHHHHHHHHHh
Q 034454 81 TTQEIVDAVIAAL 93 (94)
Q Consensus 81 ~T~~~~~~v~~~l 93 (94)
+|+||+++|+++|
T Consensus 321 ~T~e~~~ai~~~l 333 (333)
T TIGR00175 321 TTSDFTEAVIKRL 333 (333)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999875
No 10
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=5.7e-34 Score=225.16 Aligned_cols=89 Identities=31% Similarity=0.518 Sum_probs=84.8
Q ss_pred CCccccCCC-cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCC--
Q 034454 1 MPGGNVGAD-HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL-- 76 (94)
Q Consensus 1 ~psanig~~-~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-- 76 (94)
+||+|||++ ++||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||++++++| ++|+||
T Consensus 308 aPSanig~~~~a~FEpv----HGSAPdIAGk~iANP~A~ILS~amML~~~Lg~~~~A~~I~~AV~~vl~~g-~~T~Dl~~ 382 (409)
T PLN02329 308 LPSASLGESGPGLFEPI----HGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVVDALNKG-FRTGDIYS 382 (409)
T ss_pred CceeecCCCCceeeecc----CCCchhhcCCcccChHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHcC-CcCccccc
Confidence 599999987 6999999 9999999999999999999999999999 999999999999999999998 789999
Q ss_pred -CCC-CCHHHHHHHHHHHhC
Q 034454 77 -GGS-STTQEIVDAVIAALE 94 (94)
Q Consensus 77 -gg~-~~T~~~~~~v~~~l~ 94 (94)
||+ ++|+||+++|+++|+
T Consensus 383 ~Gg~~~~T~e~~daIi~~l~ 402 (409)
T PLN02329 383 PGNKLVGCKEMGEEVLKSVD 402 (409)
T ss_pred CCCCccCHHHHHHHHHHHHH
Confidence 776 899999999999873
No 11
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=8.9e-34 Score=227.09 Aligned_cols=88 Identities=28% Similarity=0.374 Sum_probs=85.0
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC---
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG--- 77 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg--- 77 (94)
+||+|||++++||||+ |||||||||||+|||+|+|+|++|||+|||+.++|++|++||.+++++| ++|+||+
T Consensus 244 apSaNiG~~~amFEpv----HGSAPdIAGk~iANP~a~IlSaamML~hLG~~~~A~~I~~AV~~vl~~G-~~T~Dl~~~~ 318 (473)
T TIGR02924 244 AGSANIGEEYAMFEAV----HGSAPDIAGQNIANPSGLLNAAIQMLVHIGQSDIAQLIYNAWLKTLEDG-VHTADIYNEK 318 (473)
T ss_pred ccceecCCCcceeecC----CCchhhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccc
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 7999994
Q ss_pred ---CCCCHHHHHHHHHHHh
Q 034454 78 ---GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 ---g~~~T~~~~~~v~~~l 93 (94)
|+++|+||+++|+++|
T Consensus 319 ~~gg~~sT~e~~daVi~~l 337 (473)
T TIGR02924 319 TSKQKVGTKEFAEAVTANL 337 (473)
T ss_pred cCCCCcCHHHHHHHHHHHh
Confidence 6789999999999987
No 12
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=8.1e-34 Score=220.76 Aligned_cols=88 Identities=38% Similarity=0.557 Sum_probs=84.2
Q ss_pred CCccccCC-CcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 034454 1 MPGGNVGA-DHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGG 78 (94)
Q Consensus 1 ~psanig~-~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg 78 (94)
+||+|||+ +++||||+ |||||||||||+|||+|+|||++|||+| ||+.+.|++|++||++++++| ++|+||||
T Consensus 260 apSanig~~~~a~FEp~----HGSAPdiAGk~iANP~a~IlS~amML~~~lg~~~~a~~i~~Av~~~l~~g-~~T~DlgG 334 (349)
T TIGR00169 260 LPSASLGSDGFGLFEPV----HGSAPDIAGKGIANPIAQILSAAMMLRYSFNLEEAADAIEAAVKKVLAEG-YRTPDLGS 334 (349)
T ss_pred CceEEECCCCCEEEECC----CCChhHhcCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC-CCccccCC
Confidence 59999995 48999999 9999999999999999999999999999 899999999999999999998 78999999
Q ss_pred CCCHHHHHHHHHHHh
Q 034454 79 SSTTQEIVDAVIAAL 93 (94)
Q Consensus 79 ~~~T~~~~~~v~~~l 93 (94)
+++|++|+++|++.|
T Consensus 335 ~~~t~e~t~av~~~~ 349 (349)
T TIGR00169 335 SATTEVGTAEMGEEL 349 (349)
T ss_pred CcchHHHHHHHHhcC
Confidence 999999999999864
No 13
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-33 Score=226.26 Aligned_cols=88 Identities=30% Similarity=0.417 Sum_probs=84.7
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC--
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG-- 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg-- 78 (94)
+||+|||++++||||+ |||||||||||||||+|+|+|++|||+|||+.++|++|++||.+++++| ++|+|+||
T Consensus 248 apSanig~~~amFEpv----HGSAPdIAGk~iANP~a~IlSaamML~hlG~~~~A~~I~~Av~~tl~~G-~~T~Dl~g~~ 322 (482)
T PRK09222 248 AGSANIGEEYAMFEAV----HGSAPDIAGKNIANPSGLLNAAVMMLVHIGQFDIAELIENAWLKTLEDG-IHTADIYNEG 322 (482)
T ss_pred ccceecCCCceeeECC----CCCchhhcCCCccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC-CCCcccCCCC
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 89999955
Q ss_pred ----CCCHHHHHHHHHHHh
Q 034454 79 ----SSTTQEIVDAVIAAL 93 (94)
Q Consensus 79 ----~~~T~~~~~~v~~~l 93 (94)
+++|+||+++|+++|
T Consensus 323 ~~~~~~~T~e~~~aVi~~l 341 (482)
T PRK09222 323 VSKKKVGTKEFAEAVIENL 341 (482)
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 589999999999987
No 14
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-33 Score=222.89 Aligned_cols=88 Identities=27% Similarity=0.429 Sum_probs=84.3
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCC----
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDL---- 76 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl---- 76 (94)
+||+|+|++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||++++++| ++|+||
T Consensus 316 ~pSanig~~~alFEpv----HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~I~~Av~~vl~~G-~~T~Dl~~~~ 390 (412)
T PRK06451 316 LGGANIGDTGGMFEAI----HGTAPKYAGKNVANPTGIIKGGELMLRFMGWDKAADLIDKAIMESIKQK-KVTQDLARFM 390 (412)
T ss_pred cceeeeCCCCceeECC----CCCccccCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccC
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 689999
Q ss_pred CCC-CCHHHHHHHHHHHh
Q 034454 77 GGS-STTQEIVDAVIAAL 93 (94)
Q Consensus 77 gg~-~~T~~~~~~v~~~l 93 (94)
||. ++|+||+++|+++|
T Consensus 391 gg~~~~T~e~~daI~~~l 408 (412)
T PRK06451 391 GVRALSTTEYTDELISII 408 (412)
T ss_pred CCCccCHHHHHHHHHHHH
Confidence 555 79999999999987
No 15
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-33 Score=224.93 Aligned_cols=88 Identities=30% Similarity=0.440 Sum_probs=84.3
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC---
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG--- 77 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg--- 77 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||++++++| .+|+|||
T Consensus 380 aPSANiG~~~a~FEpv----HGSAPdIAGk~iANP~A~ILS~aMML~~LG~~~~A~~I~~AV~~vl~~g-~~T~Dlg~~~ 454 (474)
T PRK07362 380 APGANIGDNAAIFEAT----HGTAPKHAGLDRINPGSVILSGVMMLEYLGWQEAADLITKGLSAAIANK-QVTYDLARLM 454 (474)
T ss_pred cceeeeCCCceeeecC----CCCchhhcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccCCCCcc
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 6899999
Q ss_pred ----CCCCHHHHHHHHHHHh
Q 034454 78 ----GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 ----g~~~T~~~~~~v~~~l 93 (94)
|.++|+||+++|++++
T Consensus 455 ~~~~~~~sT~E~~~aIi~~~ 474 (474)
T PRK07362 455 EPPVDPLSCSEFAEAIISHF 474 (474)
T ss_pred ccCCCCcCHHHHHHHHHhcC
Confidence 5789999999999863
No 16
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-33 Score=221.63 Aligned_cols=88 Identities=33% Similarity=0.514 Sum_probs=84.0
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCC----
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDL---- 76 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl---- 76 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||
T Consensus 316 apSanig~~~a~FEpv----HGSAPdiAGk~iANP~a~IlS~amML~~lG~~~~A~~Ie~Av~~~l~~G-~~T~Dl~~~~ 390 (409)
T PRK07006 316 APGANINDGHAIFEAT----HGTAPKYAGLDKVNPGSVILSAEMMLRHMGWTEAADLIIKSMEKTIASK-TVTYDFARLM 390 (409)
T ss_pred cccceeCCCceEEECC----CCcchhhCCCCCcChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-CccccccccC
Confidence 5999999989999999 9999999999999999999999999999999999999999999999999 789999
Q ss_pred -CCC-CCHHHHHHHHHHHh
Q 034454 77 -GGS-STTQEIVDAVIAAL 93 (94)
Q Consensus 77 -gg~-~~T~~~~~~v~~~l 93 (94)
||. ++|+||+++|+++|
T Consensus 391 ~gg~~~~T~e~~daI~~~l 409 (409)
T PRK07006 391 EGATEVKCSEFGDALIKNM 409 (409)
T ss_pred CCCcccCHHHHHHHHHhhC
Confidence 445 79999999999876
No 17
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=4.4e-33 Score=220.60 Aligned_cols=88 Identities=32% Similarity=0.530 Sum_probs=84.0
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCC----
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDL---- 76 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl---- 76 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||
T Consensus 323 apSanig~~~alFEp~----HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~~~ 397 (416)
T TIGR00183 323 APGANIGDEIGIFEAT----HGTAPKYAGQDKVNPGSIILSGEMMLEHMGWKEAADLIKKAMEKAIASK-IVTYDFARLM 397 (416)
T ss_pred cceeeeCCCceEEECC----CCCchhhcCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-Cccccccccc
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 789999
Q ss_pred CC-C-CCHHHHHHHHHHHh
Q 034454 77 GG-S-STTQEIVDAVIAAL 93 (94)
Q Consensus 77 gg-~-~~T~~~~~~v~~~l 93 (94)
|| . ++|+||+++|+++|
T Consensus 398 gg~~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 398 DGAKEVKCSEFAEAIIENM 416 (416)
T ss_pred CCCcccCHHHHHHHHHhhC
Confidence 55 3 79999999999876
No 18
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=99.98 E-value=7.8e-33 Score=215.86 Aligned_cols=89 Identities=38% Similarity=0.627 Sum_probs=85.5
Q ss_pred CCccccCCC-cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCC--
Q 034454 1 MPGGNVGAD-HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL-- 76 (94)
Q Consensus 1 ~psanig~~-~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-- 76 (94)
+||+|||++ ++||||+ |||||||||||+|||+|+|+|++|||+| ||+.++|++|++||.+++++| ++|+||
T Consensus 263 ~psanig~~~~a~FEp~----HGSApdiAGk~~aNP~a~Ils~ammL~~~lg~~~~a~~i~~Av~~~l~~g-~~T~Dl~~ 337 (358)
T PRK00772 263 LPSASLGESGPGLYEPI----HGSAPDIAGKGIANPIATILSAAMMLRYSLGLEEAADAIEAAVEKVLAQG-YRTADIAE 337 (358)
T ss_pred CcceEeCCCCceeeecC----CCchhhhcCCCCcCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcC-CcCccccc
Confidence 599999976 7999999 9999999999999999999999999999 999999999999999999999 789999
Q ss_pred -CCCCCHHHHHHHHHHHhC
Q 034454 77 -GGSSTTQEIVDAVIAALE 94 (94)
Q Consensus 77 -gg~~~T~~~~~~v~~~l~ 94 (94)
||+++|+||+++|+++|+
T Consensus 338 ~gg~~~T~e~~~av~~~l~ 356 (358)
T PRK00772 338 GGGKVSTSEMGDAILAALA 356 (358)
T ss_pred CCCCcCHHHHHHHHHHHhh
Confidence 899999999999999874
No 19
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=99.97 E-value=3.8e-32 Score=210.76 Aligned_cols=84 Identities=48% Similarity=0.750 Sum_probs=80.3
Q ss_pred CCccccC-CCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 034454 1 MPGGNVG-ADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGG 78 (94)
Q Consensus 1 ~psanig-~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg 78 (94)
+||+||| +.++||||+ |||||||||||+|||+|||+|++|||+| ||+++.|++|++||.+++++| ++|+||||
T Consensus 259 ~psanig~~~~a~fEp~----HGSApdiaGk~~aNP~a~Ils~a~mL~~~lg~~~~a~~i~~Av~~~l~~g-~~T~Dlgg 333 (348)
T PF00180_consen 259 APSANIGPDGHAMFEPV----HGSAPDIAGKGIANPIAMILSAAMMLEHSLGLPEAADAIEKAVEKVLEEG-IRTPDLGG 333 (348)
T ss_dssp EEEEEEETSSEEEEEES----STTTGGGTTSSHS-THHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-EEBGGGHT
T ss_pred hhhhccCcccccccccc----ccccccccCCcccCcHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcC-CCCccccC
Confidence 4899999 789999999 9999999999999999999999999999 999999999999999999997 89999999
Q ss_pred CC----CHHHHHHHH
Q 034454 79 SS----TTQEIVDAV 89 (94)
Q Consensus 79 ~~----~T~~~~~~v 89 (94)
+. +|+||+|+|
T Consensus 334 ~~~~~~~T~e~~daV 348 (348)
T PF00180_consen 334 SATTAVSTEEFGDAV 348 (348)
T ss_dssp TTCEEBHHHHHHHHH
T ss_pred CCCCCCCHHHHHhhC
Confidence 99 999999987
No 20
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=99.97 E-value=4e-31 Score=205.41 Aligned_cols=83 Identities=30% Similarity=0.378 Sum_probs=78.6
Q ss_pred CCccccCCC---cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC
Q 034454 1 MPGGNVGAD---HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG 77 (94)
Q Consensus 1 ~psanig~~---~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg 77 (94)
+||+|||++ ++||||+ |||||||||||||||+|+|||++|||+|||++++|++|++||++++++| +|
T Consensus 259 ~pSanig~~g~~~a~FEp~----HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~a~~I~~Av~~~l~~g------~g 328 (344)
T PRK03437 259 AASGNINPTGTNPSMFEPV----HGSAPDIAGQGIADPTAAILSVALLLDHLGEEDAAARIEAAVEADLAER------GK 328 (344)
T ss_pred cceeeecCCCCcceeEecC----CCCchhhcCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------CC
Confidence 599999864 3999999 9999999999999999999999999999999999999999999999998 48
Q ss_pred CCCCHHHHHHHHHHHh
Q 034454 78 GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 g~~~T~~~~~~v~~~l 93 (94)
|.++|+||+++|+++|
T Consensus 329 g~~~T~e~~~ai~~~l 344 (344)
T PRK03437 329 MGRSTAEVGDRIAARL 344 (344)
T ss_pred CCcCHHHHHHHHHhhC
Confidence 9999999999999876
No 21
>PRK08299 isocitrate dehydrogenase; Validated
Probab=99.97 E-value=4.7e-31 Score=208.27 Aligned_cols=89 Identities=28% Similarity=0.283 Sum_probs=83.1
Q ss_pred CCccccCCCc--ceeeccccCCCCCccc-----ccccCC-CChHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH--AIFEQGASAGNVGNEK-----LVEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~--a~fEp~~~~~HGsapd-----iAGk~i-ANP~a~ils~~mmL~~lg~-------~~~A~~i~~Av~~~ 65 (94)
+||+|+|+++ +||||+ |||||| |||||+ |||+|||||++|||+|||+ .++|++|++||.++
T Consensus 289 apSanig~~~~~a~FEp~----HGSAPD~~~~~IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~ 364 (402)
T PRK08299 289 MTSVLMTPDGKTVEAEAA----HGTVTRHYRQHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIET 364 (402)
T ss_pred ccceeeCCCCCcEEEecC----CCCCcccccccccCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHH
Confidence 5999999884 899999 999999 999997 9999999999999999999 78999999999999
Q ss_pred HHcCcccCCCCC-------CCCCHHHHHHHHHHHhC
Q 034454 66 ISEGKCRTKDLG-------GSSTTQEIVDAVIAALE 94 (94)
Q Consensus 66 l~~g~~~T~Dlg-------g~~~T~~~~~~v~~~l~ 94 (94)
+++| ++|+||| |.++|+||+++|+++|+
T Consensus 365 l~~g-~~T~Dlg~~~g~~~g~~tT~e~~daIi~~l~ 399 (402)
T PRK08299 365 VESG-FMTKDLALLVGPDQKWLTTEEFLDAIDENLE 399 (402)
T ss_pred HHcC-CcCccchhccCCCCCCcCHHHHHHHHHHHHH
Confidence 9999 7899995 45899999999999873
No 22
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=99.97 E-value=1.1e-30 Score=201.47 Aligned_cols=85 Identities=35% Similarity=0.451 Sum_probs=82.6
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|||++++||||. ||||||||||++|||+|||+|++|||+|||+.+.|++|++||++++++| .+|+||||++
T Consensus 238 ~pSanig~~~a~fep~----hGsa~diaG~~~aNp~a~i~A~~~~l~~~g~~~~a~~i~~Av~~~l~~g-~~T~DlgG~~ 312 (322)
T TIGR02088 238 APSANIGDRKALFEPV----HGSAPDIAGKGIANPTAAILSVAMMLDYLGELEKGKLVWEAVEYYIIEG-KKTPDLGGTA 312 (322)
T ss_pred CceeEEcCCceEEecC----CCChhHhCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcccCCCc
Confidence 5999999999999999 9999999999999999999999999999999999999999999999998 6899999999
Q ss_pred CHHHHHHHHH
Q 034454 81 TTQEIVDAVI 90 (94)
Q Consensus 81 ~T~~~~~~v~ 90 (94)
+|+||+|+|+
T Consensus 313 ~T~e~~~av~ 322 (322)
T TIGR02088 313 KTKEVGDEIA 322 (322)
T ss_pred CHHHHHHHhC
Confidence 9999999985
No 23
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=99.96 E-value=3.3e-30 Score=199.59 Aligned_cols=91 Identities=60% Similarity=0.885 Sum_probs=88.0
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|+|++|++|||++| |+.. +++||++|||+|||+|++|||+|||++.+|++|++||.+++.+|++||+|+||+.
T Consensus 283 v~G~n~G~~yAVFE~g~r--~~~~-~~~g~~~aNPtA~llss~~MLrHL~l~~~Ad~i~~Av~~vi~egk~rT~DlGG~~ 359 (375)
T KOG0784|consen 283 VSGANYGDDYAVFEPGAR--HTGT-SIAGKNIANPTAMLLSSVDMLRHLGLPSHADRISTAVKRVIDEGKIRTKDLGGQS 359 (375)
T ss_pred ccccccccceEEeccccc--ccch-hhhcccccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccccccCCCc
Confidence 589999999999999999 9985 5999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhC
Q 034454 81 TTQEIVDAVIAALE 94 (94)
Q Consensus 81 ~T~~~~~~v~~~l~ 94 (94)
||++|+++||.+|+
T Consensus 360 Tt~dvi~avI~~l~ 373 (375)
T KOG0784|consen 360 TTQDVIDAVIANLR 373 (375)
T ss_pred chHHHHHHHHHHhc
Confidence 99999999999885
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=99.96 E-value=8.6e-29 Score=195.83 Aligned_cols=89 Identities=27% Similarity=0.306 Sum_probs=82.6
Q ss_pred CCccccCCCc--ceeeccccCCCCCccc------ccccCCCChHHHHHHHHHHHHhc-------CchHHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH--AIFEQGASAGNVGNEK------LVEQKKANPVALLLSSAMMLRHL-------QFPSFADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~--a~fEp~~~~~HGsapd------iAGk~iANP~a~ils~~mmL~~l-------g~~~~A~~i~~Av~~~ 65 (94)
+||+|+|+++ +||||+ |||||| |||||+|||+|+|+|++|||+|+ |+.++|++|++||.++
T Consensus 293 apSanig~~~~~~~FEp~----HGSApd~~~~~diaGk~iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~ 368 (410)
T PLN00103 293 MTSVLVCPDGKTIEAEAA----HGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGT 368 (410)
T ss_pred hhccccCCCCCcEEEeCC----CCcCcccchhhhhcCCCccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH
Confidence 5999999874 699999 999998 99999999999999999999998 8899999999999999
Q ss_pred HHcCcccCCCC-----CCC------CCHHHHHHHHHHHhC
Q 034454 66 ISEGKCRTKDL-----GGS------STTQEIVDAVIAALE 94 (94)
Q Consensus 66 l~~g~~~T~Dl-----gg~------~~T~~~~~~v~~~l~ 94 (94)
+++| .+|+|| ||+ ++|+||+++|+++|.
T Consensus 369 l~~G-~~T~Dl~~~~~gg~~~~~~~~~T~e~~daV~~~l~ 407 (410)
T PLN00103 369 VESG-KMTKDLALLIHGPKVSRDQYLNTEEFIDAVAEELK 407 (410)
T ss_pred HHcC-CCCcccccccCCCcccCCCCcCHHHHHHHHHHHHH
Confidence 9999 689999 454 899999999999873
No 25
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=99.95 E-value=1.3e-28 Score=194.95 Aligned_cols=88 Identities=27% Similarity=0.277 Sum_probs=81.6
Q ss_pred CCccccCCCc--ceeeccccCCCCCcccc-----ccc-CCCChHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH--AIFEQGASAGNVGNEKL-----VEQ-KKANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~--a~fEp~~~~~HGsapdi-----AGk-~iANP~a~ils~~mmL~~lg~-------~~~A~~i~~Av~~~ 65 (94)
+||+|+|+++ +||||+ ||||||| +|| ++|||+|+|+|++|||+|+|+ .++|++|++||.++
T Consensus 292 apSanig~d~~~a~FEp~----HGSApdi~~~~iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~ 367 (413)
T PTZ00435 292 MTSVLVCPDGKTVEAEAA----HGTVTRHYRQHQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIET 367 (413)
T ss_pred cccceeCCCCCeEEEEcC----cCCccccchhhhcCCCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 5999999884 999999 9999998 895 789999999999999999985 68899999999999
Q ss_pred HHcCcccCCCCC----CC--------CCHHHHHHHHHHHh
Q 034454 66 ISEGKCRTKDLG----GS--------STTQEIVDAVIAAL 93 (94)
Q Consensus 66 l~~g~~~T~Dlg----g~--------~~T~~~~~~v~~~l 93 (94)
+++| ++|+||| |. ++|+||+++|+++|
T Consensus 368 i~~g-~~T~Dlg~~~~G~~~~~~~~~~~T~e~~daV~~~L 406 (413)
T PTZ00435 368 IEAG-FMTKDLAICVHGSSKVTRSDYLNTEEFIDKVAEKL 406 (413)
T ss_pred HHcC-CCccccccccCCCccccCCCCcCHHHHHHHHHHHH
Confidence 9998 7899997 74 89999999999987
No 26
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=99.95 E-value=8.1e-28 Score=190.20 Aligned_cols=88 Identities=31% Similarity=0.346 Sum_probs=81.6
Q ss_pred CCccccCCCcc--eeeccccCCCCCcccc-----ccc-CCCChHHHHHHHHHHHHhcC-------chHHHHHHHHHHHHH
Q 034454 1 MPGGNVGADHA--IFEQGASAGNVGNEKL-----VEQ-KKANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~a--~fEp~~~~~HGsapdi-----AGk-~iANP~a~ils~~mmL~~lg-------~~~~A~~i~~Av~~~ 65 (94)
+||+|+|++++ +|||+ ||||||| ||| ++|||+|+|+|++|||+|+| +.++|++|++||.++
T Consensus 290 ~pSanig~~~~~~~fEp~----HGSApdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~ 365 (409)
T TIGR00127 290 MTSVLICPDGKTFEAEAA----HGTVTRHYRMYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINT 365 (409)
T ss_pred hheeeeCCCCceEEeccc----cCCCcccchhhhCCCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHH
Confidence 59999999865 66999 9999998 896 78999999999999999985 689999999999999
Q ss_pred HHcCcccCCCC----CCC-------CCHHHHHHHHHHHh
Q 034454 66 ISEGKCRTKDL----GGS-------STTQEIVDAVIAAL 93 (94)
Q Consensus 66 l~~g~~~T~Dl----gg~-------~~T~~~~~~v~~~l 93 (94)
+++| ++|+|| ||+ ++|+||+++|+++|
T Consensus 366 i~~g-~~T~Dl~~~~GG~~~~~~~~~~T~e~~daV~~~L 403 (409)
T TIGR00127 366 VEAG-IMTKDLALILGGSPVERSAYLNTEEFIDAVEERL 403 (409)
T ss_pred HhcC-CcccccccccCCCcccCCCCcCHHHHHHHHHHHH
Confidence 9999 899999 888 89999999999987
No 27
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=99.94 E-value=2e-26 Score=181.32 Aligned_cols=88 Identities=25% Similarity=0.389 Sum_probs=80.1
Q ss_pred CCccccCCC---c--ceeeccccCCCCCccccc-----ccC-CCChHHHHHHHHHHHHhc----Cc----hHHHHHHHHH
Q 034454 1 MPGGNVGAD---H--AIFEQGASAGNVGNEKLV-----EQK-KANPVALLLSSAMMLRHL----QF----PSFADRLETA 61 (94)
Q Consensus 1 ~psanig~~---~--a~fEp~~~~~HGsapdiA-----Gk~-iANP~a~ils~~mmL~~l----g~----~~~A~~i~~A 61 (94)
+||+|+|++ + ++|||+ |||||||+ ||+ +|||+|+|+|.+|||+|+ |+ .+.|++|++|
T Consensus 285 ~pSanig~d~dg~~~a~fEp~----HGSApdiag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~A 360 (393)
T PLN00096 285 ITSNLVGVDENGTLIKEFEAS----HGTVTDMDEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAV 360 (393)
T ss_pred ccccccCCccCCccceEEEcC----CCChHHhhhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHH
Confidence 599999943 3 899999 99999999 895 999999999999999998 66 5689999999
Q ss_pred HHHHHHcCcccCCCCCC--CCCHHHHHHHHHHHh
Q 034454 62 VKRVISEGKCRTKDLGG--SSTTQEIVDAVIAAL 93 (94)
Q Consensus 62 v~~~l~~g~~~T~Dlgg--~~~T~~~~~~v~~~l 93 (94)
|.+++++| ++|+||+| .++|+||+++|+++|
T Consensus 361 v~~tie~G-~~T~DL~g~~~~tT~ef~daI~~~L 393 (393)
T PLN00096 361 IHKLFREG-RGTRDLCGAGGLTTEQFIDAVAEEL 393 (393)
T ss_pred HHHHHhcC-CcCcCCCCCCCCCHHHHHHHHHHhC
Confidence 99999999 78999955 789999999999876
No 28
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=99.93 E-value=5e-26 Score=172.66 Aligned_cols=88 Identities=33% Similarity=0.488 Sum_probs=80.3
Q ss_pred CCccccC-----C-CcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccC
Q 034454 1 MPGGNVG-----A-DHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRT 73 (94)
Q Consensus 1 ~psanig-----~-~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T 73 (94)
+||++++ + .+++|||+ |||||||+|||++||.++|||++|||+| ||++++|++|+.||.++|..| +||
T Consensus 264 LPSASLs~v~~~es~~gL~EPi----HGSAPDiagk~kvNPlaTILSAamlLkygLn~pkeakaIEdAV~kvLd~G-~rT 338 (363)
T KOG0786|consen 264 LPSASLSGVVSEESGPGLFEPI----HGSAPDIAGKDKVNPLATILSAAMLLKYGLNEPKEAKAIEDAVVKVLDKG-FRT 338 (363)
T ss_pred ccchhhcCCcccccCCcccccC----CCCCCCcCCCCccChHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcc-ccc
Confidence 5899998 3 37999999 9999999999999999999999999999 999999999999999999999 899
Q ss_pred CCCCCCCCHHHHHHHHHHHh
Q 034454 74 KDLGGSSTTQEIVDAVIAAL 93 (94)
Q Consensus 74 ~Dlgg~~~T~~~~~~v~~~l 93 (94)
.|+||..+|.+.+++|.+.+
T Consensus 339 gDlgg~~st~~~~kav~EEv 358 (363)
T KOG0786|consen 339 GDLGGPGSTLVGCKAVGEEV 358 (363)
T ss_pred cccCCCCcchhhHHHHHHHH
Confidence 99999988777777776543
No 29
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=99.93 E-value=1.1e-25 Score=180.69 Aligned_cols=89 Identities=27% Similarity=0.305 Sum_probs=81.7
Q ss_pred CCccccCCCc--ceeeccccCCCCCccc-----ccccCC-CChHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH--AIFEQGASAGNVGNEK-----LVEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~--a~fEp~~~~~HGsapd-----iAGk~i-ANP~a~ils~~mmL~~lg~-------~~~A~~i~~Av~~~ 65 (94)
+||+|+|+++ ++|||+ |||||| |+||++ |||+|+|+|.+|||+|+|. .+.|++|++||.++
T Consensus 360 ~pSanig~dg~~~~fEa~----HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~t 435 (483)
T PLN03065 360 MTSVLLSSDGKTLEAEAA----HGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIET 435 (483)
T ss_pred cccceeCCCCceEEEecC----cCcCccccchhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHH
Confidence 5999999886 699999 999999 999995 9999999999999999988 56899999999999
Q ss_pred HHcCcccCCCCC----CC-------CCHHHHHHHHHHHhC
Q 034454 66 ISEGKCRTKDLG----GS-------STTQEIVDAVIAALE 94 (94)
Q Consensus 66 l~~g~~~T~Dlg----g~-------~~T~~~~~~v~~~l~ 94 (94)
+++| ++|+||| |. ++|+||+++|+++|+
T Consensus 436 ie~G-~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~ 474 (483)
T PLN03065 436 VESG-KMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLA 474 (483)
T ss_pred HHcC-CcccccccccCCCcccCCCCcCHHHHHHHHHHHHH
Confidence 9999 6899996 63 899999999999873
No 30
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=99.90 E-value=2.9e-24 Score=168.46 Aligned_cols=89 Identities=39% Similarity=0.547 Sum_probs=84.4
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC---
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG--- 77 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg--- 77 (94)
+||+|||+.+++||++ |||||+++||+.+||+|.|+|..|||+|+||.++++.|++|+.+++++| +.|+||.
T Consensus 312 ~pgani~~~~~~fEA~----HGTapk~aG~~~~Np~a~Ils~~~ml~~~Gw~eaa~li~~a~~~ti~~~-~vT~DlArl~ 386 (407)
T COG0538 312 APGANIGDGTAEFEAT----HGTAPKYAGKDSTNPIASILSGTMMLRHRGWLEAADLIEKAVEDTIESG-KVTYDLARLM 386 (407)
T ss_pred cccceecCceEEEEec----cCccccccCcCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC-ceeHHHHHhh
Confidence 5999999999999999 9999999999999999999999999999999999999999999999998 6799994
Q ss_pred -C---CCCHHHHHHHHHHHhC
Q 034454 78 -G---SSTTQEIVDAVIAALE 94 (94)
Q Consensus 78 -g---~~~T~~~~~~v~~~l~ 94 (94)
+ ..+|+||+|+|+++|+
T Consensus 387 ~~~~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 387 GGAKRYLSTSEFADAIIENLK 407 (407)
T ss_pred CCCccceeHHHHHHHHHHhcC
Confidence 3 5799999999999985
No 31
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=97.88 E-value=8.8e-06 Score=62.80 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=20.4
Q ss_pred CCCcccccccCCCChHHHHHHHHHH
Q 034454 21 NVGNEKLVEQKKANPVALLLSSAMM 45 (94)
Q Consensus 21 HGsapdiAGk~iANP~a~ils~~mm 45 (94)
||+|+||||||+|||.+|+.|+.+.
T Consensus 273 HGTAfDIAGkg~A~~~s~~~Ai~~A 297 (298)
T PF04166_consen 273 HGTAFDIAGKGIADPSSMIEAIKLA 297 (298)
T ss_dssp S-S-CCGTTTTTS-THHHHHHHHHH
T ss_pred CCchhhhhCCCCCChHHHHHHHHHh
Confidence 9999999999999999999998764
No 32
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=97.84 E-value=1.3e-05 Score=62.69 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=25.6
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHH
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLR 47 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~ 47 (94)
+||||+||||||+|||.+|+.|..+..+
T Consensus 297 DHGTAfDIAGkG~A~~~S~~~Ai~lA~~ 324 (326)
T PRK03371 297 DHGTAFDIAWTGKAKSESMAVSIKLAMQ 324 (326)
T ss_pred CCCchhhhhcCCcCCHHHHHHHHHHHHH
Confidence 4999999999999999999999888655
No 33
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=97.84 E-value=1.2e-05 Score=62.84 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=27.0
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHhc
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRHL 49 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~l 49 (94)
+||||+||||||+|||.+|+.|..+..+..
T Consensus 298 DHGTAfDIAGkg~A~~~S~~~Ai~lA~~~a 327 (332)
T PRK00232 298 DHGTALDLAGKGIADVGSFITALNLAIRMA 327 (332)
T ss_pred CCcchhhhhcCCCCCHHHHHHHHHHHHHHH
Confidence 499999999999999999999999877653
No 34
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=97.81 E-value=1.5e-05 Score=62.55 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=27.1
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHhc
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRHL 49 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~l 49 (94)
+||||+||||||+|||.+|+.|..+..+..
T Consensus 303 DHGTAfDIAGkg~A~~~S~~~Ai~lA~~~~ 332 (336)
T PRK05312 303 DHGTAFDIAGKGIARPDSLIAALRLAAQMA 332 (336)
T ss_pred CCcchhhhhcCCCCCHHHHHHHHHHHHHHH
Confidence 499999999999999999999999877653
No 35
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=97.81 E-value=1.5e-05 Score=62.37 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=27.0
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHhc
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRHL 49 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~l 49 (94)
+||||+||||||+|||.+|+.|..+..+..
T Consensus 294 DHGTAfDIAGkg~A~~~S~~~Ai~lA~~~a 323 (329)
T PRK01909 294 DHGTALDLAGTGRADPGSMIAAIDTAVTMA 323 (329)
T ss_pred CCcchhhhhcCCCCCHHHHHHHHHHHHHHH
Confidence 499999999999999999999998877653
No 36
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=97.81 E-value=1.5e-05 Score=62.41 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=26.6
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHh
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRH 48 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~ 48 (94)
+||||+||||||+|||.+|+.|..+..+.
T Consensus 298 DHGTAfDIAGkg~A~~~S~~~Ai~lA~~~ 326 (332)
T PRK03743 298 DHGTAFDIAGTGKASSVSMEEAILLAAKY 326 (332)
T ss_pred CCcchhhhhcCCCCCHHHHHHHHHHHHHH
Confidence 49999999999999999999999987765
No 37
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=97.77 E-value=1.9e-05 Score=62.18 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=26.9
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHhc
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRHL 49 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~l 49 (94)
+||||+|||||++|||.+|+.|.-+..+..
T Consensus 311 DHGTAfDIAGkg~A~~~S~~~Ai~lA~~la 340 (345)
T PRK02746 311 DHGTAFDIAGKGIARPQSMKAAIKLAWELS 340 (345)
T ss_pred CCcchhhhhcCCCCCHHHHHHHHHHHHHHH
Confidence 499999999999999999999998876653
No 38
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=97.77 E-value=1.9e-05 Score=61.48 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=25.6
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHH
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLR 47 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~ 47 (94)
+||||+|||||++|||.+|+.|..+..+
T Consensus 291 DHGTAfDIAGkg~A~~~S~~~Ai~~A~~ 318 (320)
T TIGR00557 291 DHGTAFDIAGKGKADPGSLIAAIKLAIE 318 (320)
T ss_pred CCcchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999888765
No 39
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=97.74 E-value=2.2e-05 Score=60.94 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=26.9
Q ss_pred CCCCcccccccC-CCChHHHHHHHHHHHHhc
Q 034454 20 GNVGNEKLVEQK-KANPVALLLSSAMMLRHL 49 (94)
Q Consensus 20 ~HGsapdiAGk~-iANP~a~ils~~mmL~~l 49 (94)
+||||+|||||+ +|||.+|+.|..+..+..
T Consensus 274 DHGTAfDIAGkg~~A~~~S~~~Ai~lA~~~~ 304 (307)
T PRK03946 274 DHGTAFDIAYKNAKANTKSYLNAIKYAINLL 304 (307)
T ss_pred CCCchhhhcCCCCcCCHHHHHHHHHHHHHHh
Confidence 499999999999 999999999998876653
No 40
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=97.74 E-value=2e-05 Score=61.70 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHh
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRH 48 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~ 48 (94)
+||||+||||||||||.+++-|..+.-+.
T Consensus 297 DHGTAfDiAgkGiA~~~S~~~Ai~lA~~l 325 (332)
T COG1995 297 DHGTAFDIAGKGIADPGSLIAAIKLAAKL 325 (332)
T ss_pred CccchhhhhcCCcCCchHHHHHHHHHHHH
Confidence 49999999999999999999998876654
No 41
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=94.70 E-value=0.076 Score=42.18 Aligned_cols=80 Identities=31% Similarity=0.361 Sum_probs=59.0
Q ss_pred ceeeccccCCCCCcccc-----ccc-CCCChHHHHHHHHHHHHh---cCc----hHHHHHHHHHHHHHHHcCcccCCCC-
Q 034454 11 AIFEQGASAGNVGNEKL-----VEQ-KKANPVALLLSSAMMLRH---LQF----PSFADRLETAVKRVISEGKCRTKDL- 76 (94)
Q Consensus 11 a~fEp~~~~~HGsapdi-----AGk-~iANP~a~ils~~mmL~~---lg~----~~~A~~i~~Av~~~l~~g~~~T~Dl- 76 (94)
--||..+- ||+-..- -|+ ---||+|.|.+-.--|.| |.- ...++.++.+.-.+++.| ..|+||
T Consensus 311 KT~EaEAA--HGTVtRHyr~hqkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G-~MTKDLa 387 (422)
T KOG1526|consen 311 KTVEAEAA--HGTVTRHYRMHQKGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESG-KMTKDLA 387 (422)
T ss_pred Ceeeeecc--ccchhHHHHHHhcCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc-cchHhHH
Confidence 34555544 8875422 233 367999999998887777 321 256899999999999999 469999
Q ss_pred ---CC------CCCHHHHHHHHHHHh
Q 034454 77 ---GG------SSTTQEIVDAVIAAL 93 (94)
Q Consensus 77 ---gg------~~~T~~~~~~v~~~l 93 (94)
+| ..+|+||.|+|..+|
T Consensus 388 l~i~g~~~r~~y~~T~eFidav~~~L 413 (422)
T KOG1526|consen 388 LCIHGKVERSDYLNTEEFIDAVASNL 413 (422)
T ss_pred HHhcCCccccccccHHHHHHHHHHHH
Confidence 33 368999999998876
No 42
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=82.18 E-value=2.4 Score=36.42 Aligned_cols=66 Identities=27% Similarity=0.420 Sum_probs=43.5
Q ss_pred CcceeeccccCCCCCcccccccC------CCChHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHcCcccCCC
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQK------KANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEGKCRTKD 75 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk~------iANP~a~ils~~mmL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~D 75 (94)
..+|||+++ .||||+.+-|= .=+-.+-+|+.+--|+||+.. -.|+.+.+|+.+.|+++|.-.+.
T Consensus 570 GGGLFETGA---GGSAPKHVqQf~eEnhLRWDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ksPsRk 646 (735)
T PF03971_consen 570 GGGLFETGA---GGSAPKHVQQFVEENHLRWDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNKSPSRK 646 (735)
T ss_dssp S-EEEES-S---S---HHHHHHHCCCS-----THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-S--SS
T ss_pred CCceeccCC---CCCccHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 458999996 69999876552 346789999999999998653 24788999999999998654445
Q ss_pred CC
Q 034454 76 LG 77 (94)
Q Consensus 76 lg 77 (94)
.|
T Consensus 647 vg 648 (735)
T PF03971_consen 647 VG 648 (735)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 43
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=81.79 E-value=3.3 Score=35.58 Aligned_cols=66 Identities=27% Similarity=0.417 Sum_probs=49.9
Q ss_pred CcceeeccccCCCCCcccccccC------CCChHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHcCcccCCC
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQK------KANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEGKCRTKD 75 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk~------iANP~a~ils~~mmL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~D 75 (94)
..+|||+++ .||||+.+-|= .=+-.+-+|+.+--|+||+.. -.|+.+++|+.+.|.++|.-.+.
T Consensus 574 GGGLFETGA---GGSAPKHVqQf~eEnhLRWDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ksPsRk 650 (741)
T TIGR00178 574 GGGLFETGA---GGSAPKHVQQFLEENHLRWDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNKSPSRK 650 (741)
T ss_pred CCceecCCC---CCCccHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 358999996 69999876552 446788999999999998653 23788889999999987644444
Q ss_pred CC
Q 034454 76 LG 77 (94)
Q Consensus 76 lg 77 (94)
.|
T Consensus 651 vg 652 (741)
T TIGR00178 651 VG 652 (741)
T ss_pred cC
Confidence 44
No 44
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=69.04 E-value=12 Score=31.89 Aligned_cols=66 Identities=26% Similarity=0.408 Sum_probs=48.4
Q ss_pred CcceeeccccCCCCCccccccc----C--CCChHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHcCcccCCC
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQ----K--KANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEGKCRTKD 75 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk----~--iANP~a~ils~~mmL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~D 75 (94)
..+|||+++ .||||+-.-| | .=+-.+-+|+.+.=|+|++.+ -.|+.++.|..+.|.+.|.-.+.
T Consensus 576 GGgmfETGA---GGSAPKhVqQ~~eENhLRWDSLGEFLALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~KsPsRk 652 (744)
T COG2838 576 GGGMFETGA---GGSAPKHVQQLVEENHLRWDSLGEFLALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNNKSPSRK 652 (744)
T ss_pred CCceeecCC---CCCCcHHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 358999985 6999976544 1 346788999999999998654 24778888888888876643444
Q ss_pred CC
Q 034454 76 LG 77 (94)
Q Consensus 76 lg 77 (94)
.|
T Consensus 653 vg 654 (744)
T COG2838 653 VG 654 (744)
T ss_pred cc
Confidence 43
No 45
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=66.76 E-value=19 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHH-------cCcccCCCC-----CCCCCHHHHHHHHHHHh
Q 034454 53 SFADRLETAVKRVIS-------EGKCRTKDL-----GGSSTTQEIVDAVIAAL 93 (94)
Q Consensus 53 ~~A~~i~~Av~~~l~-------~g~~~T~Dl-----gg~~~T~~~~~~v~~~l 93 (94)
+..+-+.+||.+.|. .|.+.++.| |..+|..|..+.|+..+
T Consensus 73 e~Geevy~aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~ 125 (132)
T PF03469_consen 73 EWGEEVYNAVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQW 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHH
Confidence 556777777777764 366778877 56799999999998775
No 46
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=66.25 E-value=3.5 Score=30.71 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=24.8
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCCh
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
+|-+|-|+..+.|-|+ |||-+|+-|+-.=-|
T Consensus 159 Vp~~~AGd~gg~~CPC----HGSHYdasGRIrkGP 189 (210)
T KOG1671|consen 159 VPIANAGDYGGYYCPC----HGSHYDASGRIRKGP 189 (210)
T ss_pred cccccccccCceeccc----ccccccccCceecCC
Confidence 3567888888999999 999999999744444
No 47
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=57.44 E-value=6.6 Score=26.50 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=19.1
Q ss_pred CcceeeccccCCCCCcccccccCCCCh
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
...++.|. ||+.+|+.|+-+..|
T Consensus 83 ~~~~~CPc----Hgs~Fdl~G~~~~gP 105 (126)
T cd03470 83 YGGFFCPC----HGSHYDASGRIRKGP 105 (126)
T ss_pred CCEEEecC----cCCEECCCCeEecCC
Confidence 45788888 999999999877655
No 48
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=48.22 E-value=29 Score=20.91 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcCcccCCCCCCC-CCHHHHHHHHHHHh
Q 034454 54 FADRLETAVKRVISEGKCRTKDLGGS-STTQEIVDAVIAAL 93 (94)
Q Consensus 54 ~A~~i~~Av~~~l~~g~~~T~Dlgg~-~~T~~~~~~v~~~l 93 (94)
.++++++-+...++.|+..+-|+-|- .=++.|.+.++..|
T Consensus 2 ~G~~~~~~i~~~l~~~~~V~lDF~gv~~~~ssFl~eafg~l 42 (74)
T PF14213_consen 2 DGERLRDEIEPALKEGEKVVLDFEGVESITSSFLNEAFGQL 42 (74)
T ss_pred ChHHHHHHHHHHHhcCCeEEEECCCcccccHHHHHHHHHHH
Confidence 46788888999999998889999774 45677777766543
No 49
>PRK14700 recombination factor protein RarA; Provisional
Probab=46.50 E-value=39 Score=26.44 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.2
Q ss_pred CCCChHHHHHHHHH--HHHhcCchHH
Q 034454 31 KKANPVALLLSSAM--MLRHLQFPSF 54 (94)
Q Consensus 31 ~iANP~a~ils~~m--mL~~lg~~~~ 54 (94)
|.|||.++.++.+. ..+.+|++|.
T Consensus 175 GlAdP~al~~a~aa~~A~~~iG~PEa 200 (300)
T PRK14700 175 GNADPQALRVAMDAWNAYEKLGMPEG 200 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChHH
Confidence 68999998887766 5577999875
No 50
>COG4779 FepG ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]
Probab=44.53 E-value=7.3 Score=30.87 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=21.1
Q ss_pred ccccCCCcceeeccccCCCCCcccccccC
Q 034454 3 GGNVGADHAIFEQGASAGNVGNEKLVEQK 31 (94)
Q Consensus 3 sanig~~~a~fEp~~~~~HGsapdiAGk~ 31 (94)
|+-+|=..++||+.+||--|| |||.|-+
T Consensus 85 GAALGlsGAIFQs~trNpLGS-PDiIGFt 112 (346)
T COG4779 85 GAALGLSGAIFQSLTRNPLGS-PDIIGFT 112 (346)
T ss_pred HHHHhcchhhhhhhccCCCCC-CCeeeec
Confidence 445566679999998865666 8998865
No 51
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=43.86 E-value=12 Score=26.63 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=18.0
Q ss_pred ceeeccccCCCCCcccccccCCCCh
Q 034454 11 AIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 11 a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
.+|.|. |||.+|+.|+-+..|
T Consensus 133 ~~~CPc----Hgs~Fd~~G~~~~gp 153 (174)
T TIGR01416 133 GFFCPC----HGSHYDTAGRVRKGP 153 (174)
T ss_pred EEEeCC----CCCEECCCCcEecCC
Confidence 588888 999999999877765
No 52
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=42.01 E-value=23 Score=25.42 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=17.1
Q ss_pred CCCChHHHHHHHHH--HHHhcCchHH
Q 034454 31 KKANPVALLLSSAM--MLRHLQFPSF 54 (94)
Q Consensus 31 ~iANP~a~ils~~m--mL~~lg~~~~ 54 (94)
|.|||.++.++.+. +.+.+|+.|.
T Consensus 37 GlAdP~Al~~a~aa~~a~~~iG~PE~ 62 (168)
T PF12002_consen 37 GLADPQALSIAVAAYQAVERIGMPEA 62 (168)
T ss_dssp GGGSTCHHHHHHHHHHHHHHH-CCCC
T ss_pred hccCccHHHHHHHHHHHHHHHCCcHH
Confidence 68999998777666 5566888754
No 53
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=36.57 E-value=24 Score=24.66 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=18.9
Q ss_pred CCcceeeccccCCCCCcccccccCCCCh
Q 034454 8 ADHAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 8 ~~~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
++..+|-|. |||.+|..|+-+-.|
T Consensus 122 ~~~~~~CPC----HGS~yd~~g~vv~GP 145 (177)
T COG0723 122 AEGGFFCPC----HGSRYDPDGGVVKGP 145 (177)
T ss_pred CCCeEEccC----CCCeEcCCCCeeCCC
Confidence 446889998 999999999854443
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.58 E-value=66 Score=26.54 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=19.5
Q ss_pred CCCChHHHHHHHHH--HHHhcCchHH
Q 034454 31 KKANPVALLLSSAM--MLRHLQFPSF 54 (94)
Q Consensus 31 ~iANP~a~ils~~m--mL~~lg~~~~ 54 (94)
|.|||.++.++.+. ..+++|++|.
T Consensus 298 GlAdP~Al~~a~aa~da~~~lG~PE~ 323 (436)
T COG2256 298 GLADPNALQVAVAALDAVERLGSPEA 323 (436)
T ss_pred cCCChhHHHHHHHHHHHHHHhCCchH
Confidence 68999999888776 4577999875
No 55
>PRK11409 antitoxin YefM; Provisional
Probab=31.87 E-value=93 Score=19.37 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=25.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCC
Q 034454 41 SSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDL 76 (94)
Q Consensus 41 s~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl 76 (94)
+.-=.|..+.-++.+++|.+++++ ++.|+..++|+
T Consensus 47 sl~Etl~ll~~p~~~~~l~~~i~~-~~~G~~~~~~~ 81 (83)
T PRK11409 47 SLEETAYLLRSPANARRLMDSIDS-LKSGKGTEKDI 81 (83)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH-HHcCCCcccCc
Confidence 333345556778899999999999 56676777776
No 56
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=28.24 E-value=61 Score=20.15 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHh
Q 034454 75 DLGGSSTTQEIVDAVIAAL 93 (94)
Q Consensus 75 Dlgg~~~T~~~~~~v~~~l 93 (94)
|+||..+.+|+.+.|.++.
T Consensus 15 ~~g~~~~~~ei~~~v~~~~ 33 (92)
T PF14338_consen 15 DLGGSASRKEIYERVAERF 33 (92)
T ss_pred HcCCCcCHHHHHHHHHHHh
Confidence 5678889999999998764
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.54 E-value=1.1e+02 Score=24.07 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHH--HHHhcCchHH
Q 034454 31 KKANPVALLLSSAM--MLRHLQFPSF 54 (94)
Q Consensus 31 ~iANP~a~ils~~m--mL~~lg~~~~ 54 (94)
++|||.++.++.+. ..+.+|++|.
T Consensus 279 g~a~~~~~~~~~~~~~~~~~~g~pe~ 304 (413)
T PRK13342 279 GLADPNALQVAVAAADAVERIGMPEG 304 (413)
T ss_pred cccCHHHHHHHHHHHHHHHHhCCcHH
Confidence 68999997776655 5677999875
No 58
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=27.35 E-value=25 Score=30.83 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=40.3
Q ss_pred ccccccC--CCChHH---HHHHHHHHHHhcCchHH-------------HHHHHHHHHHHHHcCcccCCCCCCCCCHHHHH
Q 034454 25 EKLVEQK--KANPVA---LLLSSAMMLRHLQFPSF-------------ADRLETAVKRVISEGKCRTKDLGGSSTTQEIV 86 (94)
Q Consensus 25 pdiAGk~--iANP~a---~ils~~mmL~~lg~~~~-------------A~~i~~Av~~~l~~g~~~T~Dlgg~~~T~~~~ 86 (94)
|.+ ||| ++=||| +..|+..|++||.|... .+.+ |.....-.+.-.|.++||...+.-+.
T Consensus 73 ~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~--a~~~~~~~~~~~T~~l~~~~~~~~r~ 149 (746)
T KOG0354|consen 73 PAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQI--ACFSIYLIPYSVTGQLGDTVPRSNRG 149 (746)
T ss_pred Hhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHH--HHHhhccCcccceeeccCccCCCchh
Confidence 335 887 678888 79999999999988654 3444 33333333345689999876555554
Q ss_pred H
Q 034454 87 D 87 (94)
Q Consensus 87 ~ 87 (94)
+
T Consensus 150 ~ 150 (746)
T KOG0354|consen 150 E 150 (746)
T ss_pred h
Confidence 3
No 59
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=27.35 E-value=61 Score=21.79 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHH--cCcccCCCCCCCCCHHHHH
Q 034454 52 PSFADRLETAVKRVIS--EGKCRTKDLGGSSTTQEIV 86 (94)
Q Consensus 52 ~~~A~~i~~Av~~~l~--~g~~~T~Dlgg~~~T~~~~ 86 (94)
....++|++++++... +|-+.=.||||+....++.
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DLGgs~~n~e~a 78 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDLGSAVMNAEMA 78 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcCCCcHhHHHHH
Confidence 3567899999999976 5556677998766544443
No 60
>PRK13690 hypothetical protein; Provisional
Probab=26.88 E-value=1.9e+02 Score=21.21 Aligned_cols=43 Identities=14% Similarity=0.441 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHcCcccCCCC---C-----------CCCCHHHHHHHHHHHh
Q 034454 51 FPSFADRLETAVKRVISEGKCRTKDL---G-----------GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 51 ~~~~A~~i~~Av~~~l~~g~~~T~Dl---g-----------g~~~T~~~~~~v~~~l 93 (94)
+.+-.+.++.++...++.......|+ | |+.+..|++++|.+.|
T Consensus 3 ~~~i~~~~~~~~~El~~~a~l~~g~i~VvGcSTSEV~G~~IGt~ss~eva~~i~~~l 59 (184)
T PRK13690 3 LEEIKKQTRQILEELLEQANLKPGQIFVLGCSTSEVLGERIGTAGSLEVAEAIVEAL 59 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCEEEEecchHhhCCcccCCcChHHHHHHHHHHH
Confidence 34556777888888888765555555 2 4678899999988754
No 61
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.61 E-value=83 Score=21.55 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=18.8
Q ss_pred HHHHHHcCcccCCCCCCCCCHHHHHHHHHH
Q 034454 62 VKRVISEGKCRTKDLGGSSTTQEIVDAVIA 91 (94)
Q Consensus 62 v~~~l~~g~~~T~Dlgg~~~T~~~~~~v~~ 91 (94)
|...+++..+...|||-..+.++|.+++.+
T Consensus 21 v~~~l~~~GfeVi~LG~~v~~e~~v~aa~~ 50 (134)
T TIGR01501 21 LDHAFTNAGFNVVNLGVLSPQEEFIKAAIE 50 (134)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 334444333667777777777777777665
No 62
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=26.39 E-value=49 Score=17.49 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHH
Q 034454 78 GSSTTQEIVDAVIA 91 (94)
Q Consensus 78 g~~~T~~~~~~v~~ 91 (94)
|..++.+|+++|++
T Consensus 11 G~~~C~~fA~ai~~ 24 (35)
T PF04060_consen 11 GYPTCRAFAEAIVR 24 (35)
T ss_dssp SSSSHHHHHHHHHC
T ss_pred CCccHHHHHHHHHc
Confidence 67899999999975
No 63
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.80 E-value=1.1e+02 Score=23.94 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCc
Q 034454 38 LLLSSAMMLRHL-QFPSFADRLETAVKRVISEGK 70 (94)
Q Consensus 38 ~ils~~mmL~~l-g~~~~A~~i~~Av~~~l~~g~ 70 (94)
....++||++.+ -|.|..+.+++|..--++.|.
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 356788999887 789999999999999999983
No 64
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=25.45 E-value=2.3e+02 Score=22.02 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHH
Q 034454 42 SAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSSTTQEIVDAVIAA 92 (94)
Q Consensus 42 ~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~~T~~~~~~v~~~ 92 (94)
.+-+|+.+|++..|.+|-++|-+.-+.+.+ .||.|+++.|.+.
T Consensus 146 L~~i~~~yGEe~~a~~IA~~Iv~~R~~~~i--------~tt~~L~~ii~~~ 188 (305)
T TIGR00006 146 LERILKKYGEEKFSKRIARAIVERRKKKPI--------QTTKELAELISKA 188 (305)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHH
Confidence 355677788888999999998765544322 3566777666543
No 65
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=24.74 E-value=88 Score=22.26 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=20.7
Q ss_pred HHHHHHcCcccCCCCCCCCCHHHHHHHHHH
Q 034454 62 VKRVISEGKCRTKDLGGSSTTQEIVDAVIA 91 (94)
Q Consensus 62 v~~~l~~g~~~T~Dlgg~~~T~~~~~~v~~ 91 (94)
+...++...+.+.|||-..+.++|.+++.+
T Consensus 104 v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~ 133 (197)
T TIGR02370 104 VVTMLRANGFDVIDLGRDVPIDTVVEKVKK 133 (197)
T ss_pred HHHHHHhCCcEEEECCCCCCHHHHHHHHHH
Confidence 334444333777788888888888888764
No 66
>PF01349 Flavi_NS4B: Flavivirus non-structural protein NS4B; InterPro: IPR001528 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4B protein is small and poorly conserved among the Flaviviruses. NS4B contains multiple hydrophobic potential membrane spanning regions []. NS4B may form membrane components of the viral replication complex and could be involved in membrane localisation of NS3 and NS5 (see IPR000208 from INTERPRO) [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=24.70 E-value=3.3e+02 Score=20.93 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHH--------HcCcccCCCCC
Q 034454 32 KANPVALLLSSAMMLRHLQFP---SFADRLETAVKRVI--------SEGKCRTKDLG 77 (94)
Q Consensus 32 iANP~a~ils~~mmL~~lg~~---~~A~~i~~Av~~~l--------~~g~~~T~Dlg 77 (94)
-++|+.++.+..|.+=|+.+- -+|+..++|-+++. -+| ..|.|+.
T Consensus 107 ~~T~~tl~~~~~l~~~H~a~~~PG~qA~~~r~Aqkr~aagi~KNp~VDG-~~~~di~ 162 (254)
T PF01349_consen 107 QMTPTTLVAGVGLAAVHYAIVLPGLQAEATRRAQKRTAAGIMKNPVVDG-IVTTDIP 162 (254)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCccCC-eeccCCC
Confidence 469999999999988885442 45666777766664 357 5688985
No 67
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=23.87 E-value=1.3e+02 Score=24.74 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=37.8
Q ss_pred ccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC
Q 034454 29 EQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG 77 (94)
Q Consensus 29 Gk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg 77 (94)
+..-.+=..++.....||++-|...+|+.+|+++...+-.+ .++|.+
T Consensus 298 ~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~lyN~~la~--~~~d~~ 344 (520)
T PF07944_consen 298 YAETCASVNMMKLARRLFRLTGDARYADYYERALYNALLAG--QSPDGG 344 (520)
T ss_pred CccccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccc--cCCCCC
Confidence 34455667899999999999999999999999999987765 356654
No 68
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.84 E-value=1.1e+02 Score=19.95 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=10.7
Q ss_pred ccCCCCCCCCCHHHHHHHHH
Q 034454 71 CRTKDLGGSSTTQEIVDAVI 90 (94)
Q Consensus 71 ~~T~Dlgg~~~T~~~~~~v~ 90 (94)
+.+.++|...+++++.+++.
T Consensus 28 ~~vi~lG~~vp~e~~~~~a~ 47 (122)
T cd02071 28 FEVIYTGLRQTPEEIVEAAI 47 (122)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 45555555555555555544
No 69
>PF11811 DUF3331: Domain of unknown function (DUF3331); InterPro: IPR021769 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.
Probab=23.71 E-value=1.2e+02 Score=20.00 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.6
Q ss_pred cCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHH
Q 034454 6 VGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAM 44 (94)
Q Consensus 6 ig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~m 44 (94)
|...-.+|.|. ....| +|--+|||+.++
T Consensus 64 I~rGD~VyrP~----~r~~P-------~N~~aMILAs~l 91 (96)
T PF11811_consen 64 IRRGDAVYRPR----RRPRP-------ANADAMILASAL 91 (96)
T ss_pred ecCCCceECCC----CCCCC-------CCHHHHhhHHhh
Confidence 33345789996 33444 599999999875
No 70
>PF08769 Spo0A_C: Sporulation initiation factor Spo0A C terminal; InterPro: IPR014879 The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005509 calcium ion binding, 0006355 regulation of transcription, DNA-dependent, 0042173 regulation of sporulation resulting in formation of a cellular spore, 0005737 cytoplasm; PDB: 1FC3_C 1LQ1_D.
Probab=23.54 E-value=1.8e+02 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 034454 78 GSSTTQEIVDAVIAALE 94 (94)
Q Consensus 78 g~~~T~~~~~~v~~~l~ 94 (94)
++-+-+||.+.+.+.|+
T Consensus 90 ~kPTnsEFI~~~~~~lr 106 (106)
T PF08769_consen 90 GKPTNSEFIAMLADYLR 106 (106)
T ss_dssp S---HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 56789999999998874
No 71
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.05 E-value=59 Score=24.05 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCchH
Q 034454 38 LLLSSAMMLRHLQFPS 53 (94)
Q Consensus 38 ~ils~~mmL~~lg~~~ 53 (94)
-+-|++|||+++|-.-
T Consensus 45 Evvslam~L~y~Gk~v 60 (195)
T COG4990 45 EVVSLAMMLQYLGKTV 60 (195)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 4689999999998543
No 72
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=22.61 E-value=64 Score=25.60 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.0
Q ss_pred cccCCCChHHHHHHHHHHHHhc
Q 034454 28 VEQKKANPVALLLSSAMMLRHL 49 (94)
Q Consensus 28 AGk~iANP~a~ils~~mmL~~l 49 (94)
|||++-|| +.|-.+.|||+--
T Consensus 211 AgKDvS~g-G~iGtl~mlle~S 231 (324)
T COG2144 211 AGKDVSNG-GLLGTLLMLLEKS 231 (324)
T ss_pred hcccccCc-cHHHHHHHHHHhh
Confidence 79999999 6777788888653
No 73
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=22.42 E-value=1.1e+02 Score=21.04 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHH
Q 034454 36 VALLLSSAMMLRHLQFPSFADRLET 60 (94)
Q Consensus 36 ~a~ils~~mmL~~lg~~~~A~~i~~ 60 (94)
.+.+.|.+..|-.+|+.+.|..|-+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~ 90 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLS 90 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3778888888988999999987753
No 74
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=22.39 E-value=81 Score=18.44 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHH
Q 034454 35 PVALLLSSAMMLRHLQFPSFADRLETA 61 (94)
Q Consensus 35 P~a~ils~~mmL~~lg~~~~A~~i~~A 61 (94)
|.+++-...-.|+.+|..+.++.|++.
T Consensus 56 ~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 56 PNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp STSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 444555666667777777777766653
No 75
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.60 E-value=1.2e+02 Score=20.39 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=9.3
Q ss_pred ccCCCCCCCCCHHHHHHHHH
Q 034454 71 CRTKDLGGSSTTQEIVDAVI 90 (94)
Q Consensus 71 ~~T~Dlgg~~~T~~~~~~v~ 90 (94)
+.--|+|...+.++|++++.
T Consensus 31 feVi~lg~~~s~e~~v~aa~ 50 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAV 50 (132)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 44444444444444444443
No 76
>PRK12425 fumarate hydratase; Provisional
Probab=21.33 E-value=4.6e+02 Score=21.44 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCc--hHHHHHHHHHHHHHHHcC
Q 034454 40 LSSAMMLRHLQF--PSFADRLETAVKRVISEG 69 (94)
Q Consensus 40 ls~~mmL~~lg~--~~~A~~i~~Av~~~l~~g 69 (94)
.|.+.||...|. ++.++.|.+|+.++++.+
T Consensus 51 ~Aha~~l~~~G~l~~~~~~~I~~al~ei~~~~ 82 (464)
T PRK12425 51 KAAARVNDRNGDLPADIARLIEQAADEVLDGQ 82 (464)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCc
Confidence 355668888776 688999999999998754
No 77
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=21.16 E-value=1.4e+02 Score=18.37 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhc-CchHHHHHHHHHHHH
Q 034454 36 VALLLSSAMMLRHL-QFPSFADRLETAVKR 64 (94)
Q Consensus 36 ~a~ils~~mmL~~l-g~~~~A~~i~~Av~~ 64 (94)
+||+.+.+++|.-+ ++.-.|-.+++++..
T Consensus 14 ~G~LIAvvLLLsIl~~lt~~ai~~Qq~~At 43 (66)
T PF13179_consen 14 TGMLIAVVLLLSILAFLTYWAIKVQQEQAT 43 (66)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999885 667777777777654
No 78
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=20.77 E-value=2.1e+02 Score=22.89 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHcCc
Q 034454 37 ALLLSSAMMLRHLQFP-----SFADRLETAVKRVISEGK 70 (94)
Q Consensus 37 a~ils~~mmL~~lg~~-----~~A~~i~~Av~~~l~~g~ 70 (94)
+.+++.+.|--.||++ |+=.+|++.+++.+++||
T Consensus 46 ~~~~~~~~laYtfGlRHA~DADHIAAIDN~tRKLmQqgK 84 (342)
T COG3376 46 ASLLGAGLLAYTLGLRHAFDADHIAAIDNVTRKLMQQGK 84 (342)
T ss_pred hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhCCC
Confidence 3455555544446664 556689999999999996
No 79
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=20.41 E-value=86 Score=26.40 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=24.3
Q ss_pred HHHcCcccCCCCCCCCCHHHHHHHHHHHh
Q 034454 65 VISEGKCRTKDLGGSSTTQEIVDAVIAAL 93 (94)
Q Consensus 65 ~l~~g~~~T~Dlgg~~~T~~~~~~v~~~l 93 (94)
.+..+|+.|+|+-=..|+.++++++++.|
T Consensus 356 li~SpkVaTYDl~PEMSa~evtd~~~~~i 384 (509)
T COG0696 356 LIPSPKVATYDLKPEMSAKEVTDALVEAI 384 (509)
T ss_pred eccCCCccccccCcccchHHHHHHHHHHH
Confidence 35667788999988899999999998876
Done!