Query 034454
Match_columns 94
No_of_seqs 143 out of 1073
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ty4_A Probable homoisocitrate 100.0 3.3E-36 1.1E-40 234.2 9.8 90 1-94 276-365 (366)
2 1x0l_A Homoisocitrate dehydrog 100.0 2.2E-35 7.5E-40 227.2 9.1 88 1-93 243-330 (333)
3 3blx_A Isocitrate dehydrogenas 100.0 3.5E-35 1.2E-39 227.3 8.1 89 1-93 257-346 (349)
4 1wpw_A 3-isopropylmalate dehyd 100.0 3.4E-35 1.2E-39 226.4 7.8 90 1-94 240-336 (336)
5 3blx_B Isocitrate dehydrogenas 100.0 3.8E-35 1.3E-39 227.4 8.0 89 1-93 265-354 (354)
6 3udu_A 3-isopropylmalate dehyd 100.0 1.4E-34 4.7E-39 224.8 10.3 88 1-93 264-355 (361)
7 2y3z_A 3-isopropylmalate dehyd 100.0 2E-34 6.8E-39 223.7 9.0 87 1-93 260-347 (359)
8 3flk_A Tartrate dehydrogenase/ 100.0 1.3E-34 4.4E-39 225.1 7.8 88 1-93 265-360 (364)
9 1cnz_A IPMDH, IMDH, protein (3 100.0 4.5E-34 1.5E-38 221.9 9.6 88 1-93 267-359 (363)
10 3dms_A Isocitrate dehydrogenas 100.0 1.3E-34 4.5E-39 228.7 6.6 89 1-94 333-427 (427)
11 3vmk_A 3-isopropylmalate dehyd 100.0 5.1E-34 1.7E-38 222.5 9.1 88 1-93 276-371 (375)
12 3r8w_A 3-isopropylmalate dehyd 100.0 5.8E-34 2E-38 223.9 9.0 89 1-94 304-398 (405)
13 3u1h_A 3-isopropylmalate dehyd 100.0 7.9E-34 2.7E-38 222.3 8.9 88 1-93 283-376 (390)
14 1a05_A IPMDH, IMDH, 3-isopropy 100.0 1E-33 3.5E-38 219.5 9.5 89 1-94 262-355 (358)
15 1vlc_A 3-isopropylmalate dehyd 100.0 7.2E-34 2.5E-38 221.0 8.3 87 1-93 271-362 (366)
16 2d1c_A Isocitrate dehydrogenas 100.0 6.8E-34 2.3E-38 227.8 7.0 90 1-94 264-356 (496)
17 2e0c_A 409AA long hypothetical 100.0 6.2E-34 2.1E-38 223.9 6.3 89 1-94 314-407 (409)
18 1hqs_A Isocitrate dehydrogenas 100.0 1.1E-33 3.9E-38 223.2 6.5 89 1-94 327-423 (423)
19 2iv0_A Isocitrate dehydrogenas 100.0 1.2E-33 4.1E-38 222.4 5.9 88 1-93 317-409 (412)
20 2d4v_A Isocitrate dehydrogenas 100.0 1.4E-33 4.6E-38 223.1 5.9 88 1-93 336-429 (429)
21 1tyo_A Isocitrate dehydrogenas 100.0 2.5E-33 8.5E-38 221.9 7.2 88 1-93 327-421 (435)
22 1w0d_A 3-isopropylmalate dehyd 100.0 3.7E-31 1.3E-35 203.9 9.2 82 1-93 252-337 (337)
23 2uxq_A Isocitrate dehydrogenas 100.0 2.1E-31 7.2E-36 209.0 4.5 88 1-93 288-397 (402)
24 1zor_A Isocitrate dehydrogenas 100.0 6E-31 2E-35 206.2 6.6 88 1-93 286-395 (399)
25 3us8_A Isocitrate dehydrogenas 100.0 2.9E-31 1E-35 209.6 4.3 88 1-93 312-421 (427)
26 2qfy_A Isocitrate dehydrogenas 100.0 7.5E-31 2.6E-35 207.2 4.7 88 1-93 307-419 (427)
27 1lwd_A Isocitrate dehydrogenas 100.0 1E-30 3.5E-35 205.7 5.1 88 1-93 291-406 (413)
28 4aoy_A Isocitrate dehydrogenas 100.0 1E-29 3.5E-34 199.6 4.2 89 1-94 289-399 (402)
29 1yxo_A 4-hydroxythreonine-4-ph 97.9 7.4E-06 2.5E-10 62.9 3.5 29 20-48 295-323 (328)
30 2hi1_A 4-hydroxythreonine-4-ph 97.9 7.2E-06 2.5E-10 63.0 3.2 28 20-47 301-328 (330)
31 3lxy_A 4-hydroxythreonine-4-ph 97.9 8.8E-06 3E-10 62.6 3.5 29 20-48 300-328 (334)
32 4aty_A Terephthalate 1,2-CIS-d 97.8 8.6E-06 2.9E-10 62.5 3.2 29 20-48 313-341 (349)
33 3tsn_A 4-hydroxythreonine-4-ph 97.7 2.4E-05 8.4E-10 60.9 3.3 29 20-48 334-363 (367)
34 2b0t_A NADP isocitrate dehydro 81.3 2.9 0.0001 34.7 5.8 67 9-78 570-649 (738)
35 1itw_A Isocitrate dehydrogenas 81.2 2.9 9.9E-05 34.8 5.7 67 9-78 574-653 (741)
36 2r9g_A AAA ATPase, central reg 54.5 10 0.00035 27.1 3.1 24 31-54 62-87 (204)
37 3bge_A Predicted ATPase; struc 54.1 13 0.00043 26.6 3.5 24 31-54 56-81 (201)
38 3ctd_A Putative ATPase, AAA fa 50.0 11 0.00037 27.1 2.7 35 31-65 84-120 (213)
39 1nha_A TFIIF-alpha, transcript 48.5 9 0.00031 23.7 1.8 34 60-93 22-62 (82)
40 2nwf_A Ubiquinol-cytochrome C 44.1 6.7 0.00023 25.9 0.7 23 9-35 98-120 (141)
41 1pp9_E Ubiquinol-cytochrome C 43.3 7.8 0.00027 27.0 1.0 23 9-35 153-175 (196)
42 3cx5_E Cytochrome B-C1 complex 43.2 6.8 0.00023 27.0 0.7 23 9-35 143-165 (185)
43 1u7n_A Fatty acid/phospholipid 42.1 18 0.00062 26.9 2.9 41 21-62 284-331 (336)
44 1vi1_A Fatty acid/phospholipid 39.5 16 0.00056 27.3 2.4 42 21-63 281-329 (345)
45 1i27_A Transcription factor II 36.1 9.5 0.00033 23.1 0.4 35 59-93 12-53 (73)
46 3pvs_A Replication-associated 34.7 39 0.0013 25.9 3.9 24 31-54 304-329 (447)
47 2qjy_C Ubiquinol-cytochrome C 30.7 15 0.0005 25.3 0.7 22 10-35 145-166 (187)
48 1vf5_D Rieske iron-sulfur prot 28.7 27 0.00094 23.5 1.9 22 10-35 122-143 (179)
49 1rie_A Rieske iron-sulfur prot 23.8 23 0.00077 22.6 0.7 22 10-35 87-108 (129)
50 1v8d_A Hypothetical protein (T 22.4 1.1E+02 0.0037 22.2 4.1 44 50-93 39-96 (235)
51 2bn5_A PSI; nuclear protein, s 21.6 53 0.0018 16.9 1.7 17 47-63 13-29 (33)
52 2yxb_A Coenzyme B12-dependent 21.1 77 0.0026 20.7 2.9 10 33-42 30-39 (161)
53 1fc3_A SPO0A; response regulat 20.4 1.1E+02 0.0039 19.6 3.6 16 78-93 98-113 (120)
No 1
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=3.3e-36 Score=234.19 Aligned_cols=90 Identities=39% Similarity=0.532 Sum_probs=87.2
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+++|+||||++
T Consensus 276 ~pSanig~~~a~fEpv----HGSAPdIaGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~~ 351 (366)
T 3ty4_A 276 VPSANVGDNFVMSEPV----HGSAPDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKS 351 (366)
T ss_dssp CCCEEECSSCEEECCS----SCCCTTTTTSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCCGGGTSCC
T ss_pred hcceeeCCCceEEecC----CCChhhcCCCCccCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCccCcccCCCc
Confidence 6999999999999999 999999999999999999999999999999999999999999999999988999999999
Q ss_pred CHHHHHHHHHHHhC
Q 034454 81 TTQEIVDAVIAALE 94 (94)
Q Consensus 81 ~T~~~~~~v~~~l~ 94 (94)
+|+||+++|+++|+
T Consensus 352 ~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 352 GTNEITDAVLANIH 365 (366)
T ss_dssp CHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999874
No 2
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=2.2e-35 Score=227.23 Aligned_cols=88 Identities=42% Similarity=0.588 Sum_probs=86.1
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGSS 80 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 80 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||++
T Consensus 243 ~psanig~~~a~fEp~----HGSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG~~ 317 (333)
T 1x0l_A 243 APSGNIGDTTAVFEPV----HGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDLGGDA 317 (333)
T ss_dssp CEEEEECSSCEEEEES----SCCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTCCC
T ss_pred ceeeEECCCceEEeCC----CCChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCccCCCC
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CHHHHHHHHHHHh
Q 034454 81 TTQEIVDAVIAAL 93 (94)
Q Consensus 81 ~T~~~~~~v~~~l 93 (94)
+|+||+++|+++|
T Consensus 318 ~T~e~~daV~~~l 330 (333)
T 1x0l_A 318 TTEAFTEAVVEAL 330 (333)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
No 3
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=3.5e-35 Score=227.28 Aligned_cols=89 Identities=42% Similarity=0.682 Sum_probs=85.0
Q ss_pred CCccccCCCcceeeccccCCC-CCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGN-VGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGGS 79 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~H-GsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~ 79 (94)
+||+|||++++||||+ | ||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+++|+||||+
T Consensus 257 ~pSanig~~~a~fEpv----H~GSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~ 332 (349)
T 3blx_A 257 VAGANFGRDYAVFEPG----SRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTRDIGGS 332 (349)
T ss_dssp CEEEEEESSCEEECCT----TTTSCC--CCTTCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSSCBGGGTCC
T ss_pred ceEEEECCCceeEcCC----CCCchhhhcCCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCccCCCcCCC
Confidence 5999999999999999 9 9999999999999999999999999999999999999999999999998899999999
Q ss_pred CCHHHHHHHHHHHh
Q 034454 80 STTQEIVDAVIAAL 93 (94)
Q Consensus 80 ~~T~~~~~~v~~~l 93 (94)
++|+||+++|+++|
T Consensus 333 ~~T~e~~daI~~~l 346 (349)
T 3blx_A 333 SSTTDFTNEIINKL 346 (349)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999987
No 4
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=3.4e-35 Score=226.40 Aligned_cols=90 Identities=30% Similarity=0.451 Sum_probs=87.2
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHcCcccC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEGKCRT 73 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T 73 (94)
+||+|||++++||||+ |||||||||||+|||+|+|+|++|||+|||+ .++|++|++||.+++++|+++|
T Consensus 240 ~pSanig~~~a~fEp~----HGSApdiaGk~iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~T 315 (336)
T 1wpw_A 240 APSANIGDKKALFEPV----HGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALT 315 (336)
T ss_dssp CEEEEECSSCEEEEES----SCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred cceEEECCCCceEeCC----CCCchhhCCCCCcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCccC
Confidence 5999999999999999 9999999999999999999999999999999 9999999999999999998899
Q ss_pred CCCCCCCCHHHHHHHHHHHhC
Q 034454 74 KDLGGSSTTQEIVDAVIAALE 94 (94)
Q Consensus 74 ~Dlgg~~~T~~~~~~v~~~l~ 94 (94)
+||||+++|+||+++|+++|.
T Consensus 316 ~DlgG~~~T~e~~dav~~~l~ 336 (336)
T 1wpw_A 316 PDVGGNATTDDLINEIYNKLG 336 (336)
T ss_dssp GGGTCCCCHHHHHHHHHHSCC
T ss_pred CccCCCCCHHHHHHHHHHhhC
Confidence 999999999999999999873
No 5
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=3.8e-35 Score=227.43 Aligned_cols=89 Identities=43% Similarity=0.632 Sum_probs=86.4
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEG-KCRTKDLGGS 79 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g-~~~T~Dlgg~ 79 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| +++|+||||+
T Consensus 265 ~pSanig~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~~~~T~DlgG~ 340 (354)
T 3blx_B 265 TPSANIGHKISIFEAV----HGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGT 340 (354)
T ss_dssp CEEEEEESSCEEEEEC----SCCCGGGTTTTCCCTHHHHHHHHHHHHHHTCHHHHHHHHHTHHHHHTSSTTSSCGGGTCC
T ss_pred cceeEECCCceEEecC----CCChhhhcCCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCccCCCcCCC
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 5899999999
Q ss_pred CCHHHHHHHHHHHh
Q 034454 80 STTQEIVDAVIAAL 93 (94)
Q Consensus 80 ~~T~~~~~~v~~~l 93 (94)
++|+||+++|+++|
T Consensus 341 ~~T~e~~dav~~~l 354 (354)
T 3blx_B 341 ATTSSFTEAVIKRL 354 (354)
T ss_dssp CCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999999875
No 6
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1.4e-34 Score=224.76 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=85.1
Q ss_pred CCccccCCC-cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 034454 1 MPGGNVGAD-HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGG 78 (94)
Q Consensus 1 ~psanig~~-~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg 78 (94)
+||+|||++ ++||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||++++++| ++|+||||
T Consensus 264 ~pSanig~~~~a~fEpv----HGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG 338 (361)
T 3udu_A 264 LSSASLNDKGFGLYEPA----GGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQG-KMTKDLNA 338 (361)
T ss_dssp CEEEEECTTSCEEEEES----SCCCGGGTTSSCCCCHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTT-CCCTTTCS
T ss_pred cceeeeCCCCCeeeecC----CCChhhhcCCCccCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CcCcCCCC
Confidence 599999986 6999999 9999999999999999999999999999 999999999999999999999 79999999
Q ss_pred --CCCHHHHHHHHHHHh
Q 034454 79 --SSTTQEIVDAVIAAL 93 (94)
Q Consensus 79 --~~~T~~~~~~v~~~l 93 (94)
+++|+||+++|+++|
T Consensus 339 ~~~~~T~e~~~aV~~~l 355 (361)
T 3udu_A 339 KSYLNTDEMGDCILEIL 355 (361)
T ss_dssp SSCCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHH
Confidence 899999999999987
No 7
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=2e-34 Score=223.71 Aligned_cols=87 Identities=32% Similarity=0.526 Sum_probs=84.8
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCCCCC
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGGS 79 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~ 79 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||.+++++| +|+||||+
T Consensus 260 ~pSanig~~~~~fEpv----HGSAPdiAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~Av~~~l~~g--~T~Dlgg~ 333 (359)
T 2y3z_A 260 LPSASLGRGTPVFEPV----HGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLET--PPPDLGGS 333 (359)
T ss_dssp CEEEEEESSCCEEEES----SCCCGGGTTSSCSCTHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHS--CCGGGTCC
T ss_pred cceeEeCCCCceeecC----CCChhhhCCCCCcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcC--CCCccCCC
Confidence 6999999998899999 9999999999999999999999999999 999999999999999999999 89999999
Q ss_pred CCHHHHHHHHHHHh
Q 034454 80 STTQEIVDAVIAAL 93 (94)
Q Consensus 80 ~~T~~~~~~v~~~l 93 (94)
++|+||+++|+++|
T Consensus 334 ~~T~e~~daV~~~l 347 (359)
T 2y3z_A 334 AGTEAFTATVLRHL 347 (359)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999987
No 8
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1.3e-34 Score=225.06 Aligned_cols=88 Identities=31% Similarity=0.546 Sum_probs=85.1
Q ss_pred CCccccCCCc---ceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcC-----chHHHHHHHHHHHHHHHcCccc
Q 034454 1 MPGGNVGADH---AIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQ-----FPSFADRLETAVKRVISEGKCR 72 (94)
Q Consensus 1 ~psanig~~~---a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg-----~~~~A~~i~~Av~~~l~~g~~~ 72 (94)
+||+|||++. +||||+ |||||||||||+|||+|+|||++|||+||| +.++|++|++||.+++++| ++
T Consensus 265 ~pSanig~~~~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~~~~~~A~~Ie~Av~~~l~~G-~~ 339 (364)
T 3flk_A 265 APSANLNPERNFPSLFEPV----HGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADG-SV 339 (364)
T ss_dssp CEEEEECTTCSSCEEEEES----SCCCTTTTTSSCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-CC
T ss_pred ccccccCCCCCcceEEecC----CCCchhhcCCCccCcHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHcC-CC
Confidence 5999999876 999999 999999999999999999999999999999 9999999999999999999 69
Q ss_pred CCCCCCCCCHHHHHHHHHHHh
Q 034454 73 TKDLGGSSTTQEIVDAVIAAL 93 (94)
Q Consensus 73 T~Dlgg~~~T~~~~~~v~~~l 93 (94)
|+||||+++|+||+++|+++|
T Consensus 340 T~Dlgg~~~T~e~~~aV~~~l 360 (364)
T 3flk_A 340 TPDMGGTLSTQQVGAAISDTL 360 (364)
T ss_dssp CGGGTCCCCHHHHHHHHHHHH
T ss_pred CcccCCCcCHHHHHHHHHHHH
Confidence 999999999999999999987
No 9
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=4.5e-34 Score=221.93 Aligned_cols=88 Identities=30% Similarity=0.496 Sum_probs=84.7
Q ss_pred CCccccCCCc-ceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCC-C
Q 034454 1 MPGGNVGADH-AIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL-G 77 (94)
Q Consensus 1 ~psanig~~~-a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-g 77 (94)
+||+|||++. +||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||.+++++| ++|+|| |
T Consensus 267 ~pSanig~~~~a~fEpv----HGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g 341 (363)
T 1cnz_A 267 LPSASLNEQGFGLYEPA----GGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRTGDLAR 341 (363)
T ss_dssp CEEEEECTTSCEEEEES----SCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTT-CCCGGGTT
T ss_pred cccceeCCCCCeEEEcC----CCChhhhcCCCccCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcC-CcCcccCC
Confidence 6999999876 899999 9999999999999999999999999999 999999999999999999999 799999 7
Q ss_pred C-C-CCHHHHHHHHHHHh
Q 034454 78 G-S-STTQEIVDAVIAAL 93 (94)
Q Consensus 78 g-~-~~T~~~~~~v~~~l 93 (94)
| + ++|+||+++|+++|
T Consensus 342 G~~~~~T~e~~daV~~~l 359 (363)
T 1cnz_A 342 GAAAVSTDEMGDIIARYV 359 (363)
T ss_dssp TTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 7 6 89999999999987
No 10
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1.3e-34 Score=228.73 Aligned_cols=89 Identities=28% Similarity=0.399 Sum_probs=85.4
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC--
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG-- 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg-- 78 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++| ++|+||||
T Consensus 333 ~pSanig~~~a~fEpv----HGSAPdIAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~AV~~vl~~G-~~T~Dlgg~~ 407 (427)
T 3dms_A 333 APGANLSDSVAMFEAT----HGTAPKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQK-RVTYDFARLM 407 (427)
T ss_dssp CEEEEECSSCEEEEEC----SCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-EECHHHHTTS
T ss_pred cceeeeCCCcceEEec----cCChhhhcCCCcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-Ccchhhcccc
Confidence 6999999999999999 9999999999999999999999999999999999999999999999999 68999976
Q ss_pred ----CCCHHHHHHHHHHHhC
Q 034454 79 ----SSTTQEIVDAVIAALE 94 (94)
Q Consensus 79 ----~~~T~~~~~~v~~~l~ 94 (94)
.++|+||+++|+++|+
T Consensus 408 ~g~~~~~T~e~~daV~~~l~ 427 (427)
T 3dms_A 408 EGATQVSCSGFGQVLIENME 427 (427)
T ss_dssp SSCEECCHHHHHHHHHHTTC
T ss_pred CCCCccCHHHHHHHHHHhhC
Confidence 5899999999999885
No 11
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=5.1e-34 Score=222.47 Aligned_cols=88 Identities=28% Similarity=0.434 Sum_probs=84.5
Q ss_pred CCccccCCCc-ceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCC-C
Q 034454 1 MPGGNVGADH-AIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL-G 77 (94)
Q Consensus 1 ~psanig~~~-a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-g 77 (94)
+||+|||++. +||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||+++|++| ++|+|| |
T Consensus 276 ~pSanig~~~~a~fEpv----HGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~g 350 (375)
T 3vmk_A 276 LASISMNSQGFGMYEPA----GGSAPDIAGQGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSDG-YLTCELLP 350 (375)
T ss_dssp CEEEEECTTSCEEEEES----SCCCTTTTTSSCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-CCCGGGSC
T ss_pred cceeeeCCCCceEEecC----CCCchhccCCCccCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcC-CCCchhcc
Confidence 6999999985 999999 9999999999999999999999999999 999999999999999999999 699999 5
Q ss_pred ---C--CCCHHHHHHHHHHHh
Q 034454 78 ---G--SSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 ---g--~~~T~~~~~~v~~~l 93 (94)
| .++|+||+++|+++|
T Consensus 351 ~~~G~~~~~T~e~~~aV~~~l 371 (375)
T 3vmk_A 351 ASERSQAKSTSQMGDYIAQAI 371 (375)
T ss_dssp GGGGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHH
Confidence 6 899999999999987
No 12
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=5.8e-34 Score=223.90 Aligned_cols=89 Identities=30% Similarity=0.490 Sum_probs=85.6
Q ss_pred CCccccCCC-cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCC--
Q 034454 1 MPGGNVGAD-HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL-- 76 (94)
Q Consensus 1 ~psanig~~-~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-- 76 (94)
+||+|||++ ++||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||++++++| ++|+||
T Consensus 304 ~pSanig~~~~a~fEpv----HGSAPDIAGk~iANP~A~IlS~amML~~slg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~ 378 (405)
T 3r8w_A 304 LPSASLSDSGPGLFEPI----HGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNG-FRTGDIYS 378 (405)
T ss_dssp CEEEEECSSSCCEEEES----SCCCGGGTTTTCCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTT-EECGGGCC
T ss_pred cceeeecCCCCeEEecC----CCChhhhCCCCCCCcHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHcC-CcCccccC
Confidence 599999986 6999999 9999999999999999999999999999 999999999999999999999 799999
Q ss_pred CCC--CCHHHHHHHHHHHhC
Q 034454 77 GGS--STTQEIVDAVIAALE 94 (94)
Q Consensus 77 gg~--~~T~~~~~~v~~~l~ 94 (94)
||. ++|+||+++|+++|+
T Consensus 379 gG~~~~~T~e~~~aV~~~l~ 398 (405)
T 3r8w_A 379 AGTKLVGCKEMGEEVLKSVD 398 (405)
T ss_dssp TTSEECCHHHHHHHHHHHHC
T ss_pred CCCcccCHHHHHHHHHHHHH
Confidence 998 999999999999874
No 13
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=7.9e-34 Score=222.27 Aligned_cols=88 Identities=35% Similarity=0.540 Sum_probs=84.5
Q ss_pred CCccccCCC-cceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCC--
Q 034454 1 MPGGNVGAD-HAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDL-- 76 (94)
Q Consensus 1 ~psanig~~-~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-- 76 (94)
+||+|||++ ++||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||++++++| ++|+||
T Consensus 283 ~pSanig~~~~a~fEpv----HGSAPDIAGk~iANP~A~IlS~amML~~~lg~~~~A~~Ie~AV~~vl~~G-~~T~Dl~~ 357 (390)
T 3u1h_A 283 LPSASLSTDGLGLYEPV----HGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG-YRTADIAK 357 (390)
T ss_dssp CEEEEEETTSCEEEEES----SCCCTTTTTSSCSCTHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT-CCBTTTSC
T ss_pred cceeeecCCCCeeEecC----CCChhhhcCCCcCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CcChhhcc
Confidence 599999985 8999999 9999999999999999999999999999 999999999999999999999 799999
Q ss_pred CC--CCCHHHHHHHHHHHh
Q 034454 77 GG--SSTTQEIVDAVIAAL 93 (94)
Q Consensus 77 gg--~~~T~~~~~~v~~~l 93 (94)
|| .++|+||+++|+++|
T Consensus 358 gG~~~~~T~e~~daV~~~l 376 (390)
T 3u1h_A 358 PGGKYVSTTEMTDEVKAAV 376 (390)
T ss_dssp SSCCCBCHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHH
Confidence 66 799999999999987
No 14
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1e-33 Score=219.53 Aligned_cols=89 Identities=39% Similarity=0.615 Sum_probs=84.6
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCCCC-
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLGG- 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg- 78 (94)
+||+|||+.++||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||.+++++| ++|+||+|
T Consensus 262 ~pSanig~~~~~fEpv----HGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~ 336 (358)
T 1a05_A 262 LPSASLGEGRAMYEPI----HGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRTADIAAP 336 (358)
T ss_dssp CEEEEECSSCEEEEES----SCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTT-CCCGGGCCT
T ss_pred cceeeeCCCceeeecC----CCChhHhcCCCccCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCcccccC
Confidence 6999999878999999 9999999999999999999999999999 999999999999999999999 79999943
Q ss_pred --C-CCHHHHHHHHHHHhC
Q 034454 79 --S-STTQEIVDAVIAALE 94 (94)
Q Consensus 79 --~-~~T~~~~~~v~~~l~ 94 (94)
+ ++|+||+++|+++|+
T Consensus 337 g~~~~~T~e~~daV~~~l~ 355 (358)
T 1a05_A 337 GTPVIGTKAMGAAVVNALN 355 (358)
T ss_dssp TSCCCCHHHHHHHHHHTTT
T ss_pred CCCCcCHHHHHHHHHHHhh
Confidence 6 899999999999874
No 15
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=7.2e-34 Score=221.05 Aligned_cols=87 Identities=33% Similarity=0.542 Sum_probs=84.2
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHcCcccCCCCC--
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEGKCRTKDLG-- 77 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg-- 77 (94)
+||+||| +++||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|++||.+++++| ++|+|||
T Consensus 271 ~pSanig-~~alfEpv----HGSAPdIAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~Av~~~l~~g-~~T~Dlg~~ 344 (366)
T 1vlc_A 271 LPSASFG-DKNLYEPA----GGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEG-YRTRDIAED 344 (366)
T ss_dssp CEEEEES-SSEEEEES----SCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT-CCCGGGCSS
T ss_pred ccEeeeC-CceeeecC----CCchhhcCCCCccCcHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcC-CcccccccC
Confidence 6999999 88999999 9999999999999999999999999999 999999999999999999999 8999998
Q ss_pred -CC-CCHHHHHHHHHHHh
Q 034454 78 -GS-STTQEIVDAVIAAL 93 (94)
Q Consensus 78 -g~-~~T~~~~~~v~~~l 93 (94)
|+ ++|+||+++|+++|
T Consensus 345 gg~~~~T~e~~daV~~~l 362 (366)
T 1vlc_A 345 PEKAVSTSQMGDLICKKL 362 (366)
T ss_dssp GGGCCCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 67 89999999999987
No 16
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=6.8e-34 Score=227.76 Aligned_cols=90 Identities=37% Similarity=0.493 Sum_probs=87.1
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC--
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG-- 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg-- 78 (94)
+||+|||++++||||+ |||||||||||+|||+|+|+|++|||+|||+.++|++|++||.+++++|+++|+||||
T Consensus 264 apSanig~~~a~FEpv----HGSAPDIAGk~iANP~A~IlSaamML~hlG~~~~A~~Ie~AV~~vl~~G~~~T~DLgg~~ 339 (496)
T 2d1c_A 264 APSANIGNEVAIFEAV----HGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYD 339 (496)
T ss_dssp CEEEEECSSCEEEEES----SCCCTTTTTSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSSCBHHHHCTT
T ss_pred CcEEEECCCCceeeCC----CCchhhhcCCCccCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCeeccccCCCC
Confidence 6999999999999999 9999999999999999999999999999999999999999999999999889999998
Q ss_pred -CCCHHHHHHHHHHHhC
Q 034454 79 -SSTTQEIVDAVIAALE 94 (94)
Q Consensus 79 -~~~T~~~~~~v~~~l~ 94 (94)
+++|+||+++|+++|+
T Consensus 340 ~~~sT~e~~daV~~~L~ 356 (496)
T 2d1c_A 340 RGAKTTEYTEAIIQNLG 356 (496)
T ss_dssp TCBCHHHHHHHHHHTTT
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 8999999999999873
No 17
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=6.2e-34 Score=223.90 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=84.8
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC--
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG-- 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg-- 78 (94)
+||+|||+.++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||
T Consensus 314 ~pSanig~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~ 388 (409)
T 2e0c_A 314 LGGANIGDEGGMFEAI----HGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDK-KVTQDIARFM 388 (409)
T ss_dssp CEEEEEETTEEEEEES----SCCCGGGTTTTCSCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred CceEEECCCceEEecC----CCChhhhcCCcccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CccccccccC
Confidence 6999999999999999 9999999999999999999999999999999999999999999999999 58999964
Q ss_pred ---CCCHHHHHHHHHHHhC
Q 034454 79 ---SSTTQEIVDAVIAALE 94 (94)
Q Consensus 79 ---~~~T~~~~~~v~~~l~ 94 (94)
.++|+||+++|+++|+
T Consensus 389 g~~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 389 GVKALGTKEYADELIKIMD 407 (409)
T ss_dssp TSCCCCHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 6799999999999874
No 18
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=1.1e-33 Score=223.17 Aligned_cols=89 Identities=27% Similarity=0.450 Sum_probs=85.0
Q ss_pred CCccccC--CCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 034454 1 MPGGNVG--ADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG 78 (94)
Q Consensus 1 ~psanig--~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg 78 (94)
+||+||| +.++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||
T Consensus 327 ~pSanigp~~~~alfEp~----HGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g 401 (423)
T 1hqs_A 327 APGANINYETGHAIFEAT----HGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASK-VVTYDFAR 401 (423)
T ss_dssp CEEEEECTTTCCEEEEES----CCCCGGGTTTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-EECHHHHT
T ss_pred CccceecCCCCceEEecC----CCChhhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-Cccccccc
Confidence 6999999 778999999 9999999999999999999999999999999999999999999999999 68999976
Q ss_pred ------CCCHHHHHHHHHHHhC
Q 034454 79 ------SSTTQEIVDAVIAALE 94 (94)
Q Consensus 79 ------~~~T~~~~~~v~~~l~ 94 (94)
.++|+||+++|+++|+
T Consensus 402 ~~~g~~~~~T~e~~daV~~~l~ 423 (423)
T 1hqs_A 402 LMDGATEVKCSEFGEELIKNMD 423 (423)
T ss_dssp TSSSCEECCHHHHHHHHHHTCC
T ss_pred ccCCCCCcCHHHHHHHHHHhhC
Confidence 6899999999999885
No 19
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=99.98 E-value=1.2e-33 Score=222.42 Aligned_cols=88 Identities=32% Similarity=0.499 Sum_probs=84.4
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC---
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG--- 77 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg--- 77 (94)
+||+|||+.++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||
T Consensus 317 apsanig~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~~~~ 391 (412)
T 2iv0_A 317 APGSNIGDGIGVFEPV----HGSAPKYAGQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSG-IVTYDIHRHM 391 (412)
T ss_dssp CEEEEEETTEEEEEES----SCCCSTTTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-EECHHHHHHH
T ss_pred cceEEECCCceEEeCC----CCChhhcCCCcccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-Cccccccccc
Confidence 5999999999999999 9999999999999999999999999999999999999999999999999 6899996
Q ss_pred C--CCCHHHHHHHHHHHh
Q 034454 78 G--SSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 g--~~~T~~~~~~v~~~l 93 (94)
| .++|+||+++|+++|
T Consensus 392 G~~~~~T~e~~daV~~~l 409 (412)
T 2iv0_A 392 GGTKVGTREFAEAVVENL 409 (412)
T ss_dssp CSEECCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 5 579999999999987
No 20
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=99.98 E-value=1.4e-33 Score=223.06 Aligned_cols=88 Identities=36% Similarity=0.521 Sum_probs=83.9
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCCC--
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLGG-- 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg-- 78 (94)
+||+|||+.++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||
T Consensus 336 ~pSanig~~~a~fEpv----HGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlg~~~ 410 (429)
T 2d4v_A 336 APGANLSDTHAIFEAT----HGTAPDIAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIAAG-EVTGDLAALR 410 (429)
T ss_dssp CCCEEECSSCEEEECS----CCCCTTTTTTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CEEHHHHTTC
T ss_pred cCeeEECCCceEEecC----CCChhHhcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CccccccccC
Confidence 6999999999999999 9999999999999999999999999999999999999999999999999 68999974
Q ss_pred ----CCCHHHHHHHHHHHh
Q 034454 79 ----SSTTQEIVDAVIAAL 93 (94)
Q Consensus 79 ----~~~T~~~~~~v~~~l 93 (94)
.++|+||+++|+++|
T Consensus 411 ~g~~~~~T~e~~daV~~~l 429 (429)
T 2d4v_A 411 GDVPALSTTEFTAALIRRF 429 (429)
T ss_dssp TTCCEECHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHHHHHhhC
Confidence 479999999999875
No 21
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=99.98 E-value=2.5e-33 Score=221.86 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=84.5
Q ss_pred CCccccCCCcceeeccccCCCCCcccccccCCCChHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHcCcccCCCCCC-
Q 034454 1 MPGGNVGADHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMML-RHLQFPSFADRLETAVKRVISEGKCRTKDLGG- 78 (94)
Q Consensus 1 ~psanig~~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL-~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg- 78 (94)
+||+|||++++||||+ |||||||||||+|||+|+|||++||| +|||+.++|++|++||.+++++| .+|+||||
T Consensus 327 apSanig~~~a~fEpv----HGSAPdiAGk~iANP~A~IlS~amML~~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~ 401 (435)
T 1tyo_A 327 AAGMNMGDGIAVAEPV----HGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSK-KVTQDLARH 401 (435)
T ss_dssp CEEEEECSSCEEEEES----SCCCGGGTTSSCSCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHTT-CCBHHHHTT
T ss_pred CceeeECCCceeeecC----CCChHHhcCCCCcCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCcccccc
Confidence 6999999999999999 99999999999999999999999999 99999999999999999999999 58999975
Q ss_pred -----CCCHHHHHHHHHHHh
Q 034454 79 -----SSTTQEIVDAVIAAL 93 (94)
Q Consensus 79 -----~~~T~~~~~~v~~~l 93 (94)
.++|+||+++|+++|
T Consensus 402 ~~g~~~~~T~e~~daV~~~l 421 (435)
T 1tyo_A 402 MPGVQPLRTSEYTETLIAYI 421 (435)
T ss_dssp STTCCCBCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 579999999999987
No 22
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=99.97 E-value=3.7e-31 Score=203.94 Aligned_cols=82 Identities=28% Similarity=0.422 Sum_probs=78.4
Q ss_pred CCccccCC---CcceeeccccCCCCCcccccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccCCCCC
Q 034454 1 MPGGNVGA---DHAIFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKCRTKDLG 77 (94)
Q Consensus 1 ~psanig~---~~a~fEp~~~~~HGsapdiAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg 77 (94)
+||+|||+ .++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| |
T Consensus 252 ~psanig~~~~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-------g 320 (337)
T 1w0d_A 252 AASGNIDATRANPSMFEPV----HGSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLATR-------G 320 (337)
T ss_dssp CEEEEECTTCSSCEEEEES----SCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-------T
T ss_pred CceeEeCCCCCCceEEecC----CCChhhhCCCCCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcC-------C
Confidence 59999998 56899999 9999999999999999999999999999999999999999999999998 7
Q ss_pred C-CCCHHHHHHHHHHHh
Q 034454 78 G-SSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 g-~~~T~~~~~~v~~~l 93 (94)
| +++|+||+++|+++|
T Consensus 321 g~~~~T~e~~~av~~~l 337 (337)
T 1w0d_A 321 SERLATSDVGERIAAAL 337 (337)
T ss_dssp TCCCCHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHhhC
Confidence 7 899999999999875
No 23
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=99.97 E-value=2.1e-31 Score=208.99 Aligned_cols=88 Identities=25% Similarity=0.253 Sum_probs=82.4
Q ss_pred CCccccCCCc-ceeeccccCCCCCcccc-----cccCC-CChHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH-AIFEQGASAGNVGNEKL-----VEQKK-ANPVALLLSSAMMLRHLQFPS-------FADRLETAVKRVI 66 (94)
Q Consensus 1 ~psanig~~~-a~fEp~~~~~HGsapdi-----AGk~i-ANP~a~ils~~mmL~~lg~~~-------~A~~i~~Av~~~l 66 (94)
+||+|||++. +||||+ ||||||| ||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++
T Consensus 288 ~pSanig~~~~~lfEpv----HGSAPdi~~~~~aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l 363 (402)
T 2uxq_A 288 MSSVLVSPYGYFEYEAA----HGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECI 363 (402)
T ss_dssp EEEEEECTTSCEEEECC----SCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cccceecCCCCeEEeCC----CCChhhhhhhhhcCCCcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH
Confidence 5999999987 899999 9999998 99996 999999999999999999876 7999999999999
Q ss_pred HcCcccCCCCCC--------CCCHHHHHHHHHHHh
Q 034454 67 SEGKCRTKDLGG--------SSTTQEIVDAVIAAL 93 (94)
Q Consensus 67 ~~g~~~T~Dlgg--------~~~T~~~~~~v~~~l 93 (94)
++| ++|+|||| +++|+||+++|+++|
T Consensus 364 ~~G-~~T~Dlgg~~~g~~~~~~~T~e~~daI~~~l 397 (402)
T 2uxq_A 364 ESG-YMTGDLARICEPAAIKVLDSIEFIDELGKRL 397 (402)
T ss_dssp HTT-EECHHHHTTCSSCCSEECCHHHHHHHHHHHH
T ss_pred HcC-CcCccccccCCCCCCCCcCHHHHHHHHHHHH
Confidence 999 79999976 589999999999987
No 24
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=99.96 E-value=6e-31 Score=206.21 Aligned_cols=88 Identities=33% Similarity=0.351 Sum_probs=81.6
Q ss_pred CCccccCCCc-ceeeccccCCCCCccc-----ccccCC-CChHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH-AIFEQGASAGNVGNEK-----LVEQKK-ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVI 66 (94)
Q Consensus 1 ~psanig~~~-a~fEp~~~~~HGsapd-----iAGk~i-ANP~a~ils~~mmL~~lg~~-------~~A~~i~~Av~~~l 66 (94)
+||+|||++. +||||+ |||||| |||||+ |||+|+|||++|||+|||+. ++|++|++||.+++
T Consensus 286 ~pSanig~~~~~~fEpv----HGSAPdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l 361 (399)
T 1zor_A 286 MTSVLVSPDGVYEFEAA----HGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTI 361 (399)
T ss_dssp EEEEEECTTCCEEEEES----SCCCHHHHHHHTTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCCeEEeCC----CCcccccchhhhcCCCCccCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHH
Confidence 5999999987 799999 999999 799996 99999999999999999975 47999999999999
Q ss_pred HcCcccCCCCCC--------CCCHHHHHHHHHHHh
Q 034454 67 SEGKCRTKDLGG--------SSTTQEIVDAVIAAL 93 (94)
Q Consensus 67 ~~g~~~T~Dlgg--------~~~T~~~~~~v~~~l 93 (94)
++| ++|+|||| .++|+||+++|+++|
T Consensus 362 ~~g-~~T~Dlgg~~~g~~~~~~~T~e~~daV~~~l 395 (399)
T 1zor_A 362 ESG-VITKDLQPFTEPPIDKYVTLEEFIDEVKKNL 395 (399)
T ss_dssp HTT-CCCGGGGGGCSSCCCCCCCHHHHHHHHHHHH
T ss_pred HcC-CcCccccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 999 78999975 489999999999987
No 25
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=99.96 E-value=2.9e-31 Score=209.62 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=83.3
Q ss_pred CCccccCCCc--ceeeccccCCCCCccc-----ccccCC-CChHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH--AIFEQGASAGNVGNEK-----LVEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~--a~fEp~~~~~HGsapd-----iAGk~i-ANP~a~ils~~mmL~~lg~-------~~~A~~i~~Av~~~ 65 (94)
+||+|||++. +||||+ |||||| |||||+ |||+|+|||++|||+|||+ .++|++|++||.++
T Consensus 312 ~pSanig~~~~~a~fEp~----HGSAPd~~~~~iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~ 387 (427)
T 3us8_A 312 MTSVLMTPDGKTVEAEAA----HGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDT 387 (427)
T ss_dssp EEEEEECTTSCCEEEECC----SCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CceeEECCCCCeEEEeCC----CCCcCCccchhcCCCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 5999999875 999999 999999 999999 9999999999999999997 78999999999999
Q ss_pred HHcCcccCCCCCC-------CCCHHHHHHHHHHHh
Q 034454 66 ISEGKCRTKDLGG-------SSTTQEIVDAVIAAL 93 (94)
Q Consensus 66 l~~g~~~T~Dlgg-------~~~T~~~~~~v~~~l 93 (94)
+++| ++|+|||| .++|+||+++|+++|
T Consensus 388 l~~g-~~T~Dlgg~~~~~~~~~~T~e~~daV~~~l 421 (427)
T 3us8_A 388 VESG-FMTKDLALLIGPDQPWLSTTGFLDKIDENL 421 (427)
T ss_dssp HHTT-CCBHHHHHHHCTTCCCBCHHHHHHHHHHHH
T ss_pred HHcC-CcCcccccccccCCcccCHHHHHHHHHHHH
Confidence 9999 69999987 789999999999987
No 26
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=99.96 E-value=7.5e-31 Score=207.19 Aligned_cols=88 Identities=27% Similarity=0.194 Sum_probs=82.1
Q ss_pred CCccccCCCc--ceeeccccCCCCCcc-----cccccCC-CChHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHH
Q 034454 1 MPGGNVGADH--AIFEQGASAGNVGNE-----KLVEQKK-ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~--a~fEp~~~~~HGsap-----diAGk~i-ANP~a~ils~~mmL~~lg~~-------~~A~~i~~Av~~~ 65 (94)
+||+|||++. +||||+ ||||| ||||||+ |||+|+|||++|||+|||+. ++|++|++||.++
T Consensus 307 ~pSanig~~~~~~~fEpv----HGSAPdi~~~diAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~ 382 (427)
T 2qfy_A 307 MTSILVTPDGKTFESEAA----HGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNT 382 (427)
T ss_dssp EEEEEECTTSCCEEEECC----SCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cceeEeCCCCceeEecCC----CCCcccccchhhcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHH
Confidence 5999999986 899999 99999 8899995 99999999999999999976 8999999999999
Q ss_pred HH-cCcccCCCCCC---------CCCHHHHHHHHHHHh
Q 034454 66 IS-EGKCRTKDLGG---------SSTTQEIVDAVIAAL 93 (94)
Q Consensus 66 l~-~g~~~T~Dlgg---------~~~T~~~~~~v~~~l 93 (94)
++ +| ++|+|||| .++|+||+++|+++|
T Consensus 383 l~~~G-~~T~Dlgg~~g~~~~~~~~~T~e~~daV~~~l 419 (427)
T 2qfy_A 383 VQQDG-IMTKDLALACGNNERSAYVTTEEFLDAVEKRL 419 (427)
T ss_dssp HHTTC-CCCHHHHHHTTCCSGGGCCCHHHHHHHHHHHH
T ss_pred HHhCC-CccccccccCCccccCCCCCHHHHHHHHHHHH
Confidence 99 99 79999974 479999999999987
No 27
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=99.96 E-value=1e-30 Score=205.68 Aligned_cols=88 Identities=25% Similarity=0.277 Sum_probs=82.1
Q ss_pred CCccccCCCc--ceeeccccCCCCCcccc-----cccCC-CChHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHH
Q 034454 1 MPGGNVGADH--AIFEQGASAGNVGNEKL-----VEQKK-ANPVALLLSSAMMLRHLQFPS-------FADRLETAVKRV 65 (94)
Q Consensus 1 ~psanig~~~--a~fEp~~~~~HGsapdi-----AGk~i-ANP~a~ils~~mmL~~lg~~~-------~A~~i~~Av~~~ 65 (94)
+||+|||++. +||||+ ||||||| ||||+ |||+|+|||++|||+|||+.+ +|++|++||.++
T Consensus 291 ~pSanig~~~~~~~fEpv----HGSAPdi~~~~~aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~ 366 (413)
T 1lwd_A 291 MTSVLVCPDGKTIEAEAA----HGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVET 366 (413)
T ss_dssp EEEEEECTTSSCEEEECC----SCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cccceeCCCCCceEEeCC----CCChhhhhhhhhcCCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH
Confidence 5999999876 899999 9999999 99997 999999999999999999875 799999999999
Q ss_pred HHcCcccCCCCC----C---------CCCHHHHHHHHHHHh
Q 034454 66 ISEGKCRTKDLG----G---------SSTTQEIVDAVIAAL 93 (94)
Q Consensus 66 l~~g~~~T~Dlg----g---------~~~T~~~~~~v~~~l 93 (94)
+++| ++|+||| | .++|+||+++|+++|
T Consensus 367 l~~G-~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~daV~~~l 406 (413)
T 1lwd_A 367 VESG-AMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406 (413)
T ss_dssp HHTT-CCCHHHHHHHHCTTSCCBTTTBCCHHHHHHHHHHHH
T ss_pred HHcC-CcCcccccccCCcccccccCCCCCHHHHHHHHHHHH
Confidence 9999 7999996 5 579999999999987
No 28
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=99.95 E-value=1e-29 Score=199.61 Aligned_cols=89 Identities=26% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCccccCCC-cceeeccccCCCCCccc-----ccccCC-CChHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHH
Q 034454 1 MPGGNVGAD-HAIFEQGASAGNVGNEK-----LVEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVI 66 (94)
Q Consensus 1 ~psanig~~-~a~fEp~~~~~HGsapd-----iAGk~i-ANP~a~ils~~mmL~~lg~-------~~~A~~i~~Av~~~l 66 (94)
+||+|||++ .+||||+ |||||| ||||++ |||+|+|+|++|||+|+|+ .++|++|++||.+++
T Consensus 289 ~psanig~~~~~~fEp~----HGSApd~~~~~iaGk~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l 364 (402)
T 4aoy_A 289 MTSVLVSPDGKYEFEAA----HGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTI 364 (402)
T ss_dssp EEEEEECTTCCEEEEC---------------------CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEEeec----cCCccccchhhccCCCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 589999976 6999999 999999 899998 9999999999999999986 589999999999999
Q ss_pred HcCcccCCCCCCCC--------CHHHHHHHHHHHhC
Q 034454 67 SEGKCRTKDLGGSS--------TTQEIVDAVIAALE 94 (94)
Q Consensus 67 ~~g~~~T~Dlgg~~--------~T~~~~~~v~~~l~ 94 (94)
++| ++|+||||.. +|+||+++|+++|+
T Consensus 365 ~~g-~~T~Dlgg~~~~~~~~~~~T~ef~~av~~~l~ 399 (402)
T 4aoy_A 365 ENG-VMTKDLASLSEVPEKKIVNTEDFLKEIRKTFE 399 (402)
T ss_dssp HTT-EEEHHHHTTCCCSCCEEECHHHHHHHHHHHHT
T ss_pred HcC-CCCcccccccccCCCCCcCHHHHHHHHHHHHh
Confidence 999 6999999866 99999999999874
No 29
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=97.88 E-value=7.4e-06 Score=62.88 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=26.3
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHh
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRH 48 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~ 48 (94)
+||||+||||||+|||.+|+.|..+..+.
T Consensus 295 DHGTAfDIAGkG~A~~~Sl~~Ai~~A~~~ 323 (328)
T 1yxo_A 295 DHGTALDLAGSGRIDSGSLQVALETAYQM 323 (328)
T ss_dssp CSCCCGGGTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCccccccCCCCCChHHHHHHHHHHHHH
Confidence 39999999999999999999999887664
No 30
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=97.87 E-value=7.2e-06 Score=62.99 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=25.7
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHH
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLR 47 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~ 47 (94)
+||||+||||||+|||.+|+.|..+..+
T Consensus 301 DHGTAfDIAGkG~A~~~Sl~~Ai~~A~~ 328 (330)
T 2hi1_A 301 DHGTAFDIAWTGKAKSESMAVSIKLAMQ 328 (330)
T ss_dssp SCCCCTTTTTTTCCCCHHHHHHHHHHHH
T ss_pred CCCccccccCCCCCChHHHHHHHHHHHH
Confidence 3999999999999999999999988765
No 31
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=97.85 E-value=8.8e-06 Score=62.56 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=26.4
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHh
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRH 48 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~ 48 (94)
+||||+||||||+|||.+|+.|+.+..+.
T Consensus 300 DHGTAfDIAGkG~A~~~S~~~Ai~~A~~~ 328 (334)
T 3lxy_A 300 DHGTALELAATGTADVGSFITALNLAIKM 328 (334)
T ss_dssp SSCCCGGGTTTTCSCCHHHHHHHHHHHHH
T ss_pred CCCcchhhccCCCCChHHHHHHHHHHHHH
Confidence 39999999999999999999999887764
No 32
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=97.83 E-value=8.6e-06 Score=62.46 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHHh
Q 034454 20 GNVGNEKLVEQKKANPVALLLSSAMMLRH 48 (94)
Q Consensus 20 ~HGsapdiAGk~iANP~a~ils~~mmL~~ 48 (94)
+||+|+||||||+|||.+|+.|..+....
T Consensus 313 dHGta~diagkg~a~~~s~~~Ai~~a~~~ 341 (349)
T 4aty_A 313 GHGSGFDIAGTLLADPAPLLGAIRLVTTG 341 (349)
T ss_dssp CSCCCTTSTTTTCCCCHHHHHHHHHHHHS
T ss_pred CCChhhhhccCCCCChHHHHHHHHHHHHh
Confidence 39999999999999999999999887764
No 33
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=97.66 E-value=2.4e-05 Score=60.86 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=26.3
Q ss_pred CCCCcccccccC-CCChHHHHHHHHHHHHh
Q 034454 20 GNVGNEKLVEQK-KANPVALLLSSAMMLRH 48 (94)
Q Consensus 20 ~HGsapdiAGk~-iANP~a~ils~~mmL~~ 48 (94)
+||||+|||||| +|||.+|+.|+.+..+.
T Consensus 334 DHGTAfDIAGkG~~Ad~~Sl~~Ai~~A~~~ 363 (367)
T 3tsn_A 334 DHGTAFDKAYKNAKINTKSYFEAAKFAINL 363 (367)
T ss_dssp CCCSCTTSCSSCCCCCCHHHHHHHHHHHHS
T ss_pred CCCcchhhcCCCCcCChHHHHHHHHHHHHh
Confidence 499999999999 99999999999887653
No 34
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=81.27 E-value=2.9 Score=34.73 Aligned_cols=67 Identities=27% Similarity=0.391 Sum_probs=52.2
Q ss_pred CcceeeccccCCCCCccccccc------CCCChHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHcCcccCCC
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQ------KKANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEGKCRTKD 75 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk------~iANP~a~ils~~mmL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~D 75 (94)
..+|||+++ .||||+.+-| =.=+-.+-+|+.+--|+||+.. -.|+.+++|..+.|.+.|.-.+.
T Consensus 570 GGGLfETGA---GGSAPKHVqQ~~eEnhLRWDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRk 646 (738)
T 2b0t_A 570 GGGLFETGA---GGSAPKHVQQVQEENHLRWDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRK 646 (738)
T ss_dssp SCEEEECCS---SCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSS
T ss_pred CCccccCCC---CcCchHHHHHHHHcCccchhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 468999996 6999987654 2457889999999999998653 23888999999999998755556
Q ss_pred CCC
Q 034454 76 LGG 78 (94)
Q Consensus 76 lgg 78 (94)
.|.
T Consensus 647 vGe 649 (738)
T 2b0t_A 647 VGE 649 (738)
T ss_dssp TTS
T ss_pred cCC
Confidence 654
No 35
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=81.23 E-value=2.9 Score=34.78 Aligned_cols=67 Identities=25% Similarity=0.391 Sum_probs=52.1
Q ss_pred CcceeeccccCCCCCccccccc------CCCChHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHcCcccCCC
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQ------KKANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEGKCRTKD 75 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk------~iANP~a~ils~~mmL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~D 75 (94)
..+|||+++ .||||+.+-| =.=+-.+-+|+.+--|+||+.. -.|+.+++|..+.|.+.|.-.+.
T Consensus 574 GGGLfETGA---GGSAPKHVqQ~~eEnhLRWDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRk 650 (741)
T 1itw_A 574 GGGLFETGA---GGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARK 650 (741)
T ss_dssp SCEEEESCS---SCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSS
T ss_pred CCccccCCC---CcCchHHHHHHHHcCccchhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 468999996 6999987654 2457889999999999998653 23888999999999998755556
Q ss_pred CCC
Q 034454 76 LGG 78 (94)
Q Consensus 76 lgg 78 (94)
.|.
T Consensus 651 vGe 653 (741)
T 1itw_A 651 VGE 653 (741)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
No 36
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=54.54 E-value=10 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHH--HHHhcCchHH
Q 034454 31 KKANPVALLLSSAM--MLRHLQFPSF 54 (94)
Q Consensus 31 ~iANP~a~ils~~m--mL~~lg~~~~ 54 (94)
|.|||.++.++.+. ..+.+|++|.
T Consensus 62 GlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 62 GLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 68999998887665 5577899865
No 37
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.11 E-value=13 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.1
Q ss_pred CCCChHHHHHHHHH--HHHhcCchHH
Q 034454 31 KKANPVALLLSSAM--MLRHLQFPSF 54 (94)
Q Consensus 31 ~iANP~a~ils~~m--mL~~lg~~~~ 54 (94)
|.|||.++.++.+. ..+.+|++|.
T Consensus 56 GlAdP~Al~~a~aa~~a~~~iG~PE~ 81 (201)
T 3bge_A 56 GNADPRAMQVALAAWDCFTRVGAYEG 81 (201)
T ss_dssp GGGCTTHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCcHH
Confidence 68999998877665 5577999875
No 38
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=49.99 E-value=11 Score=27.13 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHHH--HHHhcCchHHHHHHHHHHHHH
Q 034454 31 KKANPVALLLSSAM--MLRHLQFPSFADRLETAVKRV 65 (94)
Q Consensus 31 ~iANP~a~ils~~m--mL~~lg~~~~A~~i~~Av~~~ 65 (94)
|.|||.++.++.+. ..+.+|++|.--.|.+||--.
T Consensus 84 GlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyL 120 (213)
T 3ctd_A 84 GLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYL 120 (213)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 68999998887666 557799987655555555443
No 39
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=48.52 E-value=9 Score=23.72 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=25.8
Q ss_pred HHHHHHHHcCcccCCCC----CC---CCCHHHHHHHHHHHh
Q 034454 60 TAVKRVISEGKCRTKDL----GG---SSTTQEIVDAVIAAL 93 (94)
Q Consensus 60 ~Av~~~l~~g~~~T~Dl----gg---~~~T~~~~~~v~~~l 93 (94)
++|+++|...-+.|.|| .. ..+++|..+.+.+.|
T Consensus 22 e~VRryL~rkPmTT~dLl~KFK~r~~~~~~~e~v~~~a~IL 62 (82)
T 1nha_A 22 DAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQIL 62 (82)
T ss_dssp HHHHHHHHHSCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 78999998876778888 22 358888888876654
No 40
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=44.09 E-value=6.7 Score=25.88 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=18.8
Q ss_pred CcceeeccccCCCCCcccccccCCCCh
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
...++-|. ||+.+|+.|+-+..|
T Consensus 98 ~~~~~CP~----Hgs~Fd~~G~~~~gP 120 (141)
T 2nwf_A 98 FGGWFCPC----HGSHWDSAGRIRKGP 120 (141)
T ss_dssp TTEEEETT----TTEEECTTSCEEESS
T ss_pred CCEEEcCC----CCCEECCCCCCccCC
Confidence 35688898 999999999876655
No 41
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=43.33 E-value=7.8 Score=27.03 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=19.1
Q ss_pred CcceeeccccCCCCCcccccccCCCCh
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
...++.|. ||+.+|+.|+-+..|
T Consensus 153 ~~~~~CP~----HGs~FD~~G~v~~gP 175 (196)
T 1pp9_E 153 FGGYYCPC----HGSHYDASGRIRKGP 175 (196)
T ss_dssp TSSEEETT----TTEEECTTCCEEESS
T ss_pred CCEEEeCC----CCCEECCCCCCccCC
Confidence 35788898 999999999877666
No 42
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=43.22 E-value=6.8 Score=26.96 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=19.4
Q ss_pred CcceeeccccCCCCCcccccccCCCCh
Q 034454 9 DHAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 9 ~~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
...+|-|. ||+.+|+.|+-+..|
T Consensus 143 ~~~~~CPc----HGs~FD~~G~v~~gP 165 (185)
T 3cx5_E 143 FGGWFCPC----HGSHYDISGRIRKGP 165 (185)
T ss_dssp TTEEEETT----TTEEECTTCCEEESS
T ss_pred CCEEEcCC----CCCEECCCCCEecCC
Confidence 35789998 999999999877666
No 43
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=42.12 E-value=18 Score=26.90 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=29.9
Q ss_pred CCCcc-------cccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 034454 21 NVGNE-------KLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 62 (94)
Q Consensus 21 HGsap-------diAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av 62 (94)
||+++ +|++++.+|+.+++.++.+..+... ...-++|++.+
T Consensus 284 ~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A~~~a~-~~~~~~i~~~~ 331 (336)
T 1u7n_A 284 HGGAVLFGLKAPVIKTHGATGPDAVRYTIRQIHTMLE-TQVVPQLVEYY 331 (336)
T ss_dssp GCCEEEETBSSCEEECCTTCCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred cccceeecCcCcEEEeCCCCCHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 88888 8999999999999999987765432 22344444444
No 44
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=39.47 E-value=16 Score=27.30 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCCcc-------cccccCCCChHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 034454 21 NVGNE-------KLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVK 63 (94)
Q Consensus 21 HGsap-------diAGk~iANP~a~ils~~mmL~~lg~~~~A~~i~~Av~ 63 (94)
||+++ +|++++.+|+.+++.++.+..+... ...-++|++.+.
T Consensus 281 ~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A~~~a~-~~~~~~i~~~~~ 329 (345)
T 1vi1_A 281 YGGASLFGLKAPVIKAHGSSDSNAVFRAIRQAREMVS-QNVAALIQEEVK 329 (345)
T ss_dssp SCCEEEETBSSCEEECCTTCCHHHHHHHHHHHHHHHH-TTHHHHHHHHTS
T ss_pred cccceeecCCccEEEeCCCCCHHHHHHHHHHHHHHHH-cCHHHHHHHHHh
Confidence 88888 8999999999999999987766542 233455555553
No 45
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=36.08 E-value=9.5 Score=23.12 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCcccCCCCC-------CCCCHHHHHHHHHHHh
Q 034454 59 ETAVKRVISEGKCRTKDLG-------GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 59 ~~Av~~~l~~g~~~T~Dlg-------g~~~T~~~~~~v~~~l 93 (94)
+++|+++|...-+.|.||= ...+++|..+.+.+.|
T Consensus 12 Ee~VrryL~rkPmTt~dLl~KFK~r~~~~~~~e~v~~~a~IL 53 (73)
T 1i27_A 12 EDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQIL 53 (73)
T ss_dssp HHHHHHHHHHSCBCHHHHHHTSCHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 4789999987767788882 2357888877766554
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.70 E-value=39 Score=25.86 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=19.0
Q ss_pred CCCChHHHHHHHHHH--HHhcCchHH
Q 034454 31 KKANPVALLLSSAMM--LRHLQFPSF 54 (94)
Q Consensus 31 ~iANP~a~ils~~mm--L~~lg~~~~ 54 (94)
|.|||.++.++.+.+ .+.+|++|.
T Consensus 304 g~a~p~a~~~~~~~~~~~~~~g~pe~ 329 (447)
T 3pvs_A 304 GNADPRAMQVAIAAWDCFTRVGPAEG 329 (447)
T ss_dssp GGGCTHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCChhHHHHHHHHHHHHHHhCCcHH
Confidence 589999988877664 466899875
No 47
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=30.71 E-value=15 Score=25.26 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=18.3
Q ss_pred cceeeccccCCCCCcccccccCCCCh
Q 034454 10 HAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 10 ~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
..++.|. ||+.+|+.|+-+..|
T Consensus 145 ~~~~CP~----Hg~~Fd~~G~~~~gP 166 (187)
T 2qjy_C 145 GGWFCPC----HGSHYDSAGRIRKGP 166 (187)
T ss_dssp TEEEETT----TTEEECTTSCEEESS
T ss_pred CEEEeCC----CCCEECCCCeEeCCC
Confidence 5688888 999999999876655
No 48
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=28.73 E-value=27 Score=23.46 Aligned_cols=22 Identities=5% Similarity=-0.124 Sum_probs=19.2
Q ss_pred cceeeccccCCCCCcccccccCCCCh
Q 034454 10 HAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 10 ~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
..++-|. ||+.+|+.|+-+..|
T Consensus 122 ~~~~CP~----Hgs~Fd~~G~~~~gP 143 (179)
T 1vf5_D 122 NKFKCPC----HGSQYDETGRVIRGP 143 (179)
T ss_dssp SSEECTT----TCCEECSSSCCCSSS
T ss_pred CEEECCC----CCCEECCCCcEecCC
Confidence 4688888 999999999988877
No 49
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=23.85 E-value=23 Score=22.60 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=17.5
Q ss_pred cceeeccccCCCCCcccccccCCCCh
Q 034454 10 HAIFEQGASAGNVGNEKLVEQKKANP 35 (94)
Q Consensus 10 ~a~fEp~~~~~HGsapdiAGk~iANP 35 (94)
..++-|. ||+.+|+.|+-+..|
T Consensus 87 ~~i~CP~----Hg~~fd~~G~~~~~P 108 (129)
T 1rie_A 87 GGYYCPC----HGSHYDASGRIRKGP 108 (129)
T ss_dssp EEEEETT----TTEEEETTCCEEESS
T ss_pred CEEEcCC----CCCEEcCCCCEeeCC
Confidence 4677787 999999988866555
No 50
>1v8d_A Hypothetical protein (TT1679); X-RAY craytallography, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.16A {Thermus thermophilus} SCOP: c.140.1.1
Probab=22.35 E-value=1.1e+02 Score=22.22 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=31.7
Q ss_pred CchHHHHHHHHHHHHHHHcCcccCCCC---C-----------CCCCHHHHHHHHHHHh
Q 034454 50 QFPSFADRLETAVKRVISEGKCRTKDL---G-----------GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 50 g~~~~A~~i~~Av~~~l~~g~~~T~Dl---g-----------g~~~T~~~~~~v~~~l 93 (94)
++++..+.+++++...++.......|+ | |+.+..|++++|++.|
T Consensus 39 ~m~~i~~~~~~~l~Ell~~a~l~~G~ifVvGcSTSEV~G~~IGt~ss~eva~aI~~~l 96 (235)
T 1v8d_A 39 GMEGIRRAAQRAAEEFLQAFPMAPGSLFVLGGSTSEVLGERVGTRPSLEAAHAVLEGL 96 (235)
T ss_dssp -CHHHHHHHHHHHHHHHHHSCCCTTCEEEEEECHHHHHC----CCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeeHHHhCCccCCCCCcHHHHHHHHHHH
Confidence 345677888888999988776666665 2 4678888999888764
No 51
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=21.61 E-value=53 Score=16.85 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.1
Q ss_pred HhcCchHHHHHHHHHHH
Q 034454 47 RHLQFPSFADRLETAVK 63 (94)
Q Consensus 47 ~~lg~~~~A~~i~~Av~ 63 (94)
+.+|..++|+.|++-+.
T Consensus 13 rsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 13 RSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHTCHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHH
Confidence 33799999999987653
No 52
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.12 E-value=77 Score=20.73 Aligned_cols=10 Identities=0% Similarity=-0.060 Sum_probs=4.9
Q ss_pred CChHHHHHHH
Q 034454 33 ANPVALLLSS 42 (94)
Q Consensus 33 ANP~a~ils~ 42 (94)
..+.+..+..
T Consensus 30 ~HdiG~~~va 39 (161)
T 2yxb_A 30 GHDRGAKVVA 39 (161)
T ss_dssp SCCHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 4556654433
No 53
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=20.44 E-value=1.1e+02 Score=19.57 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHh
Q 034454 78 GSSTTQEIVDAVIAAL 93 (94)
Q Consensus 78 g~~~T~~~~~~v~~~l 93 (94)
++-+-+||...+.+.|
T Consensus 98 ~kPTnsEFI~~iad~L 113 (120)
T 1fc3_A 98 AKPTNSEFIAMVADKL 113 (120)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5679999999999876
Done!