BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034455
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUI0|RC24_ARATH UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana
GN=At4g30660 PE=2 SV=1
Length = 74
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
MP+ CEI CEI++A+LLPP+GVC R GCC+VEF ICL+LTILGYVPGIIYA+Y IVF R
Sbjct: 1 MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60
Query: 61 DEYFDEYRRPL 71
+EYFDEYRRP+
Sbjct: 61 EEYFDEYRRPI 71
>sp|O82232|RC22_ARATH UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana
GN=At2g24040 PE=3 SV=1
Length = 75
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
M + CE+ CEI +A+LLPPVGVCLRHGCC+VEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1 MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60
Query: 61 DEYFDEYRRPL 71
DEYFDEYRRP+
Sbjct: 61 DEYFDEYRRPI 71
>sp|Q9M095|RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana
GN=At4g30650 PE=3 SV=1
Length = 73
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
M + E+FCEIL+A+LLPP+GVCL+ GCC+VEF ICL+LTILGY+PGIIYALY IVF +R
Sbjct: 1 MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60
Query: 61 DEYFDEYRRPLK 72
E E PL
Sbjct: 61 -EGSTELGAPLN 71
>sp|Q9LRI7|OSR8_ORYSJ Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8
PE=3 SV=1
Length = 72
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 4 RCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEY 63
RC F EILLA++LPP+GV LR GCCS+EFCICLLLTILGYVPGIIYA+Y +V +D D+Y
Sbjct: 5 RCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQY 64
Query: 64 FDEYR 68
EY
Sbjct: 65 QREYH 69
>sp|Q9ARD5|LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare
GN=LT101.2 PE=2 SV=1
Length = 54
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%), Gaps = 1/49 (2%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
F E++LA++LPPVGV LR+G +VEF ICLLLT+LGY+PGIIYA+Y +V
Sbjct: 6 FIEVILAIILPPVGVFLRYGL-AVEFWICLLLTLLGYIPGIIYAVYVLV 53
>sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2
SV=1
Length = 54
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
F +I++A+LLPP+GV LR GC VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct: 6 FVDIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52
>sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2
SV=1
Length = 54
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
F EI+LA++LPP+GV L+ GC VEF ICL+LT+ GY+PGI+YALY I
Sbjct: 6 FVEIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52
>sp|P68179|LT01_HORVU Low temperature-induced protein lt101.1 OS=Hordeum vulgare
GN=LT101.1 PE=2 SV=1
Length = 54
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
E++LA++LPPVGV LR+ VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct: 8 EVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53
>sp|P68178|ESI3_LOPEL Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum
elongatum GN=ESI3 PE=2 SV=1
Length = 54
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
E++LA++LPPVGV LR+ VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct: 8 EVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53
>sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3
SV=2
Length = 57
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
MP C+I+LA++LPPVGV L GC + +F I +LLTILGY+PGII+ALY I+
Sbjct: 1 MPFTASDICKIILAIILPPVGVFLERGCGA-DFFINILLTILGYIPGIIHALYIIL 55
>sp|Q0DKW8|LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica
GN=LTI6B PE=2 SV=1
Length = 55
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
+IL+A++LPP+GV L+ GC EF ICLLLT LGY+PGIIYA+YAI
Sbjct: 9 DILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAI 53
>sp|A2Y075|LTI6B_ORYSI Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B
PE=3 SV=2
Length = 55
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
+IL+A++LPP+GV L+ GC EF ICLLLT LGY+PGIIYA+YAI
Sbjct: 9 DILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAI 53
>sp|Q8H5T6|LTI6A_ORYSJ Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica
GN=LTI6A PE=2 SV=1
Length = 56
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
+I+LA++LPP+GV + GC +EF ICLLLT GY+PGIIYA++ I
Sbjct: 10 DIILAIILPPLGVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54
>sp|Q9FE70|RC21_ARATH UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana
GN=At1g57550 PE=2 SV=1
Length = 52
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
F E+L A+ +PPVGV LR+G +EF +CLLLT+ ++PG+IYA+Y +
Sbjct: 4 FLEVLCAIFIPPVGVFLRYGL-GLEFWVCLLLTLFAFIPGLIYAIYVL 50
>sp|Q22701|YCU4_CAEEL UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans
GN=T23F2.4 PE=3 SV=2
Length = 57
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
M C + L A+LLPPVGV L GC + IC+LLTILGY+PGIIYA Y I+
Sbjct: 1 MAITCMDIPKFLFALLLPPVGVFLEKGC-THHLAICILLTILGYIPGIIYACYIIL 55
>sp|Q22700|YCU3_CAEEL UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans
GN=T23F2.3 PE=3 SV=1
Length = 57
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
M C + + AVLLPP+GV L GC IC+LLTILGY+PGIIYA Y I+
Sbjct: 1 MALTCTDIPKFICAVLLPPIGVFLEKGC-DYHLAICILLTILGYIPGIIYACYVIL 55
>sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=pmp3 PE=3 SV=1
Length = 57
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
MP C+IL A++LPP+GV L G C + I + LTILG++PGII+A Y I
Sbjct: 1 MPFTASDICKILFAIILPPLGVFLERG-CGADLLINICLTILGWIPGIIHAFYII 54
>sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=pmp-3 PE=3 SV=1
Length = 57
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 CEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
C+I++AV+LPP+GV GC + + I +LLTILGY+PGI++ALY I+
Sbjct: 9 CKIIVAVILPPLGVFFERGCGA-DLFINILLTILGYLPGIVHALYIIL 55
>sp|Q6BVN0|PMP3_DEBHA Plasma membrane proteolipid 3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PMP3 PE=3 SV=1
Length = 57
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 17 LPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
LPP+GV L GC S F I ++LTILGY+PGII+ALY I+
Sbjct: 17 LPPLGVFLERGCAS-SFWINIVLTILGYIPGIIHALYVIL 55
>sp|Q22702|YCU5_CAEEL UPF0057 membrane protein T23F2.5 OS=Caenorhabditis elegans
GN=T23F2.5 PE=3 SV=1
Length = 57
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
M C + L A+LLPP+GV L GC + I +LLTILGY+PGII+A Y I+
Sbjct: 1 MALTCTDIPKFLCALLLPPIGVWLEKGC-TYHLAINILLTILGYIPGIIHACYVIL 55
>sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2
Length = 57
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 3 TRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
T +IF +++ A++LPP+GV L GC + I +LL LGYVPGII+ALY I+
Sbjct: 4 TGSDIF-KVIFAIILPPLGVFLERGC-GADVIINILLCCLGYVPGIIHALYIIL 55
>sp|Q9Y068|RIC1_PHYIN Protein Ric1 OS=Phytophthora infestans GN=RIC1 PE=3 SV=1
Length = 57
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
MP C ++ +V++PPVGV + GC + + I LLT+LGY+PG+I+A+Y ++
Sbjct: 1 MPITCGDIPRLICSVIIPPVGVFFQVGC-TKDLAINCLLTVLGYIPGVIHAVYILI 55
>sp|P0AE42|YQAE_ECOLI UPF0057 membrane protein YqaE OS=Escherichia coli (strain K12)
GN=yqaE PE=3 SV=1
Length = 52
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALY 53
F I++ ++LPP+GV L G F I +LLT+LGY+PG+I+A +
Sbjct: 3 FWRIVITIILPPLGVLLGKGF-GWAFIINILLTLLGYIPGLIHAFW 47
>sp|P0AE43|YQAE_ECOL6 UPF0057 membrane protein YqaE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yqaE PE=3 SV=1
Length = 52
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALY 53
F I++ ++LPP+GV L G F I +LLT+LGY+PG+I+A +
Sbjct: 3 FWRIVITIILPPLGVLLGKGF-GWAFIINILLTLLGYIPGLIHAFW 47
>sp|P0AE44|YQAE_ECO57 UPF0057 membrane protein YqaE OS=Escherichia coli O157:H7 GN=yqaE
PE=3 SV=1
Length = 52
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALY 53
F I++ ++LPP+GV L G F I +LLT+LGY+PG+I+A +
Sbjct: 3 FWRIVITIILPPLGVLLGKGF-GWAFIINILLTLLGYIPGLIHAFW 47
>sp|P34655|YOT0_CAEEL UPF0057 membrane protein ZK632.10 OS=Caenorhabditis elegans
GN=ZK632.10 PE=3 SV=2
Length = 80
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 8 FCEILLAVL---LPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYF 64
C+ILLA+L LPP+ V L GC + + I +LLT LG +PGII+A Y I+ ++
Sbjct: 1 MCQILLAILAIFLPPIAVLLDVGC-NCDLLINILLTCLGIIPGIIHAWYIILCKEKTVVQ 59
Query: 65 DEYRR 69
+ Y +
Sbjct: 60 NIYVQ 64
>sp|P0CS18|PMP3_CRYNJ Plasma membrane proteolipid 3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=PMP3 PE=3 SV=1
Length = 57
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
M C +I+LA++LPP+GV L GC + I +LLTILGY+PGII+ALY I+
Sbjct: 1 MAFTCSDIFKIILAIILPPLGVFLERGC-GADLLINILLTILGYIPGIIHALYIIL 55
>sp|P0CS19|PMP3_CRYNB Plasma membrane proteolipid 3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=PMP3 PE=3
SV=1
Length = 57
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
M C +I+LA++LPP+GV L GC + I +LLTILGY+PGII+ALY I+
Sbjct: 1 MAFTCSDIFKIILAIILPPLGVFLERGC-GADLLINILLTILGYIPGIIHALYIIL 55
>sp|Q9I5W9|Y567_PSEAE UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0567
PE=3 SV=1
Length = 52
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 18 PPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
PP+GV L+ G F + +LLT+LGY+PGI++A+Y I
Sbjct: 13 PPLGVFLQVGFGG-AFWLNILLTLLGYIPGIVHAVYII 49
>sp|Q75C38|PMP3_ASHGO Plasma membrane proteolipid 3 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PMP3
PE=3 SV=1
Length = 55
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 9 CEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
+++A+ LPPV V L G VE + LLLTI + PG++YALY +
Sbjct: 7 VNVIIAIFLPPVAVFLARGW-GVECIVDLLLTIFFFFPGMLYALYIV 52
>sp|Q17638|YAM5_CAEEL UPF0057 membrane protein C04G6.5 OS=Caenorhabditis elegans
GN=C04G6.5 PE=3 SV=1
Length = 59
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALY 53
M T ++ E++L + LPP+ + C + I ++ +L ++PGI+YA+Y
Sbjct: 1 MATDADVIIEVILCIFLPPLAIWWHTKECDINVLIDIIFCLLFWLPGILYAVY 53
>sp|P74805|Y1169_SYNY3 UPF0057 membrane protein ssr1169 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=ssr1169 PE=3 SV=2
Length = 54
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 9 CEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILG-YVPGIIYALYAI 55
+I+ A+LLPP+GV L+ G +F I LLLTI G Y+ G+++A++ I
Sbjct: 4 VKIICAILLPPLGVFLQVGIGK-DFWINLLLTIFGLYILGLVHAIWVI 50
>sp|Q07549|SNA4_YEAST Protein SNA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SNA4 PE=1 SV=1
Length = 140
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 12 LLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVD 59
++A PP V LR G CS +F + +LLT+LG++PG+++A Y I
Sbjct: 17 IVAFFFPPAAVLLRSGPCSSDFLLNVLLTLLGFLPGMLHAFYYITITS 64
>sp|P87284|PMP3_YEAST Plasma membrane proteolipid 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PMP3 PE=1 SV=1
Length = 55
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
I+L++ LPPV V L G + + + ++LTIL + PG++YALY ++
Sbjct: 8 NIILSLFLPPVAVFLARGWGT-DCIVDIILTILAWFPGMLYALYIVL 53
>sp|O74837|PMP31_SCHPO Plasma membrane proteolipid 31 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pmp31 PE=1 SV=2
Length = 109
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEY 67
F I+L+ +P + V +R G C+ +F I + L LG +PGII+A+Y ++ R D
Sbjct: 9 FLLIVLSFFVPFIVVGIRRGFCTADFLINICLCALG-IPGIIHAIYIVIKYPRTVRLDIE 67
Query: 68 RRP 70
P
Sbjct: 68 NSP 70
>sp|Q20516|YV31_CAEEL UPF0057 membrane protein F47B7.1 OS=Caenorhabditis elegans
GN=F47B7.1 PE=3 SV=1
Length = 59
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALY 53
M + E++LA+ LPP+ + + C++ + ++L +VP +I+AL+
Sbjct: 1 MAIEMQQIIELILAIFLPPLAIFIHGNDCNMHVAVNIILCFFFFVPAVIHALW 53
>sp|Q9HWC5|RL11_PSEAE 50S ribosomal protein L11 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rplK PE=3
SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNAKTQGQEPGLPTPVIITVYSDRSFTFETKSTPAAV 78
>sp|Q02T91|RL11_PSEAB 50S ribosomal protein L11 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rplK PE=3 SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNAKTQGQEPGLPTPVIITVYSDRSFTFETKSTPAAV 78
>sp|B7V633|RL11_PSEA8 50S ribosomal protein L11 OS=Pseudomonas aeruginosa (strain
LESB58) GN=rplK PE=3 SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNAKTQGQEPGLPTPVIITVYSDRSFTFETKSTPAAV 78
>sp|A6UZH7|RL11_PSEA7 50S ribosomal protein L11 OS=Pseudomonas aeruginosa (strain PA7)
GN=rplK PE=3 SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNAKTQGQEPGLPTPVIITVYSDRSFTFETKSTPAAV 78
>sp|A4XZA1|RL11_PSEMY 50S ribosomal protein L11 OS=Pseudomonas mendocina (strain ymp)
GN=rplK PE=3 SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNAKTQGMEPGLPTPVIITVYSDRSFTFETKSTPASV 78
>sp|Q1IFX7|RL11_PSEE4 50S ribosomal protein L11 OS=Pseudomonas entomophila (strain L48)
GN=rplK PE=3 SV=1
Length = 143
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNARTQGQEPGLPTPVIITVYSDRSFTFETKSTPASV 78
>sp|A4VHL9|RL11_PSEU5 50S ribosomal protein L11 OS=Pseudomonas stutzeri (strain A1501)
GN=rplK PE=3 SV=1
Length = 143
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNARTQGQEPGLPTPVIITVYSDRSFTFETKSTPAAV 78
>sp|C1DKK1|RL11_AZOVD 50S ribosomal protein L11 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rplK PE=3 SV=1
Length = 143
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNARTQGMEPGLPTPVIITVYSDRSFTFETKSTPASV 78
>sp|Q9P824|PMP3_CANAX Plasma membrane proteolipid 3 homolog OS=Candida albicans GN=PMP3
PE=3 SV=1
Length = 55
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 4 RCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
E E+++A+ LPPV V ++ G + I L+L I + P I++ALY ++
Sbjct: 2 NSEKIIEVIIAIFLPPVAVFMKCGATT-PLWINLVLCIFIWFPAILHALYVVL 53
>sp|Q48D25|RL11_PSE14 50S ribosomal protein L11 OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=rplK PE=3 SV=1
Length = 143
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNARTQGIEPGLPTPVIITVYSDRSFTFETKSTPASV 78
>sp|Q2HAR0|PMP3_CHAGB Plasma membrane proteolipid 3 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=PMP3 PE=3 SV=1
Length = 53
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCS 30
MP C+I+ AV+LPP+GV L GC S
Sbjct: 1 MPFTASDICKIIFAVILPPLGVFLERGCNS 30
>sp|C3K2Y7|RL11_PSEFS 50S ribosomal protein L11 OS=Pseudomonas fluorescens (strain
SBW25) GN=rplK PE=3 SV=1
Length = 143
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNARTQGLEPGLPTPVIITVYSDRSFTFETKSTPASV 78
>sp|Q4K522|RL11_PSEF5 50S ribosomal protein L11 OS=Pseudomonas fluorescens (strain Pf-5
/ ATCC BAA-477) GN=rplK PE=3 SV=1
Length = 143
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNARTQGLEPGLPTPVIITVYSDRSFTFETKSTPASV 78
>sp|Q4ZMN3|RL11_PSEU2 50S ribosomal protein L11 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rplK PE=3 SV=1
Length = 143
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 PPVGVCL-RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKV 73
PPVG L +HG +EFC G PG+ + V+ DR F+ P V
Sbjct: 22 PPVGPALGQHGVNIMEFCKAFNARTQGIEPGLPTPVIITVYSDRSFTFETKSTPASV 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.336 0.151 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,706,829
Number of Sequences: 539616
Number of extensions: 1282277
Number of successful extensions: 3694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3626
Number of HSP's gapped (non-prelim): 58
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)