Query 034455
Match_columns 94
No_of_seqs 122 out of 668
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_4 50S ribosomal protein L 17.2 41 0.0014 19.0 0.7 16 52-67 23-38 (38)
2 3t5g_B Retinal ROD rhodopsin-s 14.7 58 0.002 23.3 1.2 15 73-88 90-104 (152)
3 1jb0_I Photosystem 1 reaction 13.9 48 0.0016 18.7 0.4 32 27-58 3-35 (38)
4 1v54_G Cytochrome C oxidase po 12.2 37 0.0013 21.9 -0.5 25 30-56 12-36 (85)
5 4goj_C Protein UNC-119 homolog 12.0 95 0.0032 23.8 1.7 16 72-88 172-187 (240)
6 2zjr_4 50S ribosomal protein L 10.3 63 0.0021 18.0 0.1 15 52-67 23-37 (37)
7 3gqq_A Protein UNC-119 homolog 10.1 91 0.0031 23.2 1.0 15 73-88 128-142 (195)
8 1b75_A Protein (50S ribosomal 9.7 35 0.0012 21.6 -1.3 9 43-51 24-32 (94)
9 2y69_G Cytochrome C oxidase po 8.7 59 0.002 21.5 -0.5 25 30-56 24-48 (97)
10 1wfw_A Kalirin-9A; SH3 domain, 7.9 62 0.0021 20.7 -0.6 8 43-50 58-65 (74)
No 1
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=17.22 E-value=41 Score=18.96 Aligned_cols=16 Identities=6% Similarity=-0.043 Sum_probs=11.0
Q ss_pred eeeEEeeCcchhhhcc
Q 034455 52 LYAIVFVDRDEYFDEY 67 (94)
Q Consensus 52 ~yvi~~~~~~~~~~~g 67 (94)
+|++++.+|+.+++.|
T Consensus 23 v~Vick~nPrhKqRQG 38 (38)
T 3r8s_4 23 IRVICSAEPKHKQRQG 38 (38)
T ss_dssp EEEEETTCGGGCEECC
T ss_pred EEEEeCCCCchhhcCC
Confidence 5778777777666554
No 2
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=14.72 E-value=58 Score=23.32 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=11.4
Q ss_pred eeeeeeeeeeeccCCC
Q 034455 73 VPYTFTFSAFCLPSSH 88 (94)
Q Consensus 73 ~~~~~~~~~~~~~~~~ 88 (94)
-.+||.| .||.|.|.
T Consensus 90 e~~dF~F-GF~IP~St 104 (152)
T 3t5g_B 90 EEWFFEF-GFVIPNST 104 (152)
T ss_dssp EEEEEEE-EEECTTEE
T ss_pred eeEeeee-eeEcCCCC
Confidence 3578888 49999874
No 3
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=13.88 E-value=48 Score=18.71 Aligned_cols=32 Identities=13% Similarity=0.433 Sum_probs=22.2
Q ss_pred cCCchhHHHHHHHHHHHhh-hhhhhheeeEEee
Q 034455 27 GCCSVEFCICLLLTILGYV-PGIIYALYAIVFV 58 (94)
Q Consensus 27 G~~~~~~~InllLTllGwi-PGiIHA~yvi~~~ 58 (94)
|......+=+++-.+.||+ |++.-|+..++.+
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe 35 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhc
Confidence 3344455667777888986 9998887765543
No 4
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=12.19 E-value=37 Score=21.94 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHhhhhhhhheeeEE
Q 034455 30 SVEFCICLLLTILGYVPGIIYALYAIV 56 (94)
Q Consensus 30 ~~~~~InllLTllGwiPGiIHA~yvi~ 56 (94)
+...|-+ ||+++-+|+++-+.+-.+
T Consensus 12 ~~~~Wkk--is~~va~P~v~l~~~n~y 36 (85)
T 1v54_G 12 GARTWRF--LTFGLALPSVALCTLNSW 36 (85)
T ss_dssp CHHHHHH--HHHHTHHHHHHHHHHHHT
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4556655 466889999988776553
No 5
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=11.96 E-value=95 Score=23.76 Aligned_cols=16 Identities=44% Similarity=1.036 Sum_probs=12.1
Q ss_pred eeeeeeeeeeeeccCCC
Q 034455 72 KVPYTFTFSAFCLPSSH 88 (94)
Q Consensus 72 ~~~~~~~~~~~~~~~~~ 88 (94)
--.+||.| .||+|.|.
T Consensus 172 LksfDFeF-GFcIPnS~ 187 (240)
T 4goj_C 172 LKSFDFHF-GFCIPSSK 187 (240)
T ss_dssp EEEEEEEE-EEECTTCE
T ss_pred hheecccc-ceeccCCc
Confidence 34678888 49999984
No 6
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...
Probab=10.33 E-value=63 Score=18.02 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=8.6
Q ss_pred eeeEEeeCcchhhhcc
Q 034455 52 LYAIVFVDRDEYFDEY 67 (94)
Q Consensus 52 ~yvi~~~~~~~~~~~g 67 (94)
+|++++ +|+.++++|
T Consensus 23 v~Vick-nPrhKqrQg 37 (37)
T 2zjr_4 23 VLVICS-NVKHKQRQG 37 (37)
T ss_dssp EEECCS-SSTTCEECC
T ss_pred EEEECC-CCcccccCC
Confidence 566666 666555443
No 7
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=10.06 E-value=91 Score=23.16 Aligned_cols=15 Identities=47% Similarity=1.152 Sum_probs=11.2
Q ss_pred eeeeeeeeeeeccCCC
Q 034455 73 VPYTFTFSAFCLPSSH 88 (94)
Q Consensus 73 ~~~~~~~~~~~~~~~~ 88 (94)
-.+||.| .||.|.|.
T Consensus 128 k~~dF~F-GFcIP~St 142 (195)
T 3gqq_A 128 KSFDFHF-GFCIPSSK 142 (195)
T ss_dssp EEEEEEC-CCBCTTSE
T ss_pred eEEeeee-eeEcCCCC
Confidence 3577777 49999884
No 8
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=9.70 E-value=35 Score=21.56 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=7.1
Q ss_pred Hhhhhhhhh
Q 034455 43 GYVPGIIYA 51 (94)
Q Consensus 43 GwiPGiIHA 51 (94)
|.+||++|.
T Consensus 24 G~vPaVvYG 32 (94)
T 1b75_A 24 NKFPAIIYG 32 (94)
T ss_dssp TBCCEEEEC
T ss_pred CCceEEEEC
Confidence 678988885
No 9
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.67 E-value=59 Score=21.46 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHhhhhhhhheeeEE
Q 034455 30 SVEFCICLLLTILGYVPGIIYALYAIV 56 (94)
Q Consensus 30 ~~~~~InllLTllGwiPGiIHA~yvi~ 56 (94)
+...|-+ +|+++-+|+++-+.+-.+
T Consensus 24 ~~~~Wkk--iS~~va~P~v~l~~~n~y 48 (97)
T 2y69_G 24 GARTWRF--LTFGLALPSVALCTLNSW 48 (97)
T ss_dssp CHHHHHH--HHHHTHHHHHHHHHHHHT
T ss_pred hhhhHHH--HHHHHHHHHHHHHHHHHH
Confidence 3566665 467889999998876554
No 10
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=7.89 E-value=62 Score=20.72 Aligned_cols=8 Identities=63% Similarity=1.269 Sum_probs=6.2
Q ss_pred Hhhhhhhh
Q 034455 43 GYVPGIIY 50 (94)
Q Consensus 43 GwiPGiIH 50 (94)
||+||.+-
T Consensus 58 gWvPG~vL 65 (74)
T 1wfw_A 58 GWVPGSIL 65 (74)
T ss_dssp EEEEGGGC
T ss_pred CcccccEe
Confidence 68998873
Done!