Query 034455
Match_columns 94
No_of_seqs 122 out of 668
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 04:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034455.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034455hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kshb_ b.1.18.8 (B:) GMP-PDE 22.3 15 0.0011 24.5 1.3 15 73-88 87-101 (149)
2 d2qam41 g.42.1.1 (4:1-38) Ribo 15.3 15 0.0011 19.5 -0.1 16 52-67 23-38 (38)
3 d1dfup_ b.53.1.1 (P:) Ribosoma 14.5 8.5 0.00062 23.0 -1.4 9 43-51 24-32 (94)
4 d1oedc_ f.36.1.1 (C:) Acetylch 8.8 1.4E+02 0.01 18.8 3.3 9 11-19 19-27 (260)
5 d1rfya_ a.2.13.1 (A:) Transcri 8.4 53 0.0039 20.0 0.8 13 34-46 76-88 (89)
6 d1sg1x1 g.24.1.1 (X:2-56) Low 8.2 41 0.003 19.0 0.2 15 78-92 33-47 (55)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 7.0 1.5E+02 0.011 14.5 2.1 22 31-52 5-26 (32)
8 d1lnsa1 a.40.2.1 (A:1-145) X-P 6.4 82 0.006 20.3 1.1 22 29-50 69-90 (145)
9 d1w6ka2 a.102.4.2 (A:100-378) 6.3 13 0.00092 26.7 -3.5 33 43-75 4-36 (279)
10 d1v54g_ f.23.2.1 (G:) Mitochon 6.1 41 0.003 20.2 -0.6 23 30-54 12-34 (84)
No 1
>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.27 E-value=15 Score=24.53 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=12.1
Q ss_pred eeeeeeeeeeeccCCC
Q 034455 73 VPYTFTFSAFCLPSSH 88 (94)
Q Consensus 73 ~~~~~~~~~~~~~~~~ 88 (94)
-.+||.|. ||.|.|.
T Consensus 87 e~~dFeFG-F~IP~S~ 101 (149)
T d1kshb_ 87 EEWFFEFG-FVIPNST 101 (149)
T ss_dssp EEEEEEEE-EECTTEE
T ss_pred eEEEeeee-eEecCCC
Confidence 46888886 9999874
No 2
>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}
Probab=15.27 E-value=15 Score=19.50 Aligned_cols=16 Identities=6% Similarity=-0.043 Sum_probs=11.2
Q ss_pred eeeEEeeCcchhhhcc
Q 034455 52 LYAIVFVDRDEYFDEY 67 (94)
Q Consensus 52 ~yvi~~~~~~~~~~~g 67 (94)
+|++++.+|+.+++.|
T Consensus 23 v~ViCk~nPrHKQRQG 38 (38)
T d2qam41 23 IRVICSAEPKHKQRQG 38 (38)
T ss_dssp CCCCBSSCGGGCCCCC
T ss_pred EEEEeCCCCcccccCC
Confidence 6777777777666654
No 3
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=14.52 E-value=8.5 Score=23.04 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=7.1
Q ss_pred Hhhhhhhhh
Q 034455 43 GYVPGIIYA 51 (94)
Q Consensus 43 GwiPGiIHA 51 (94)
|++||++|.
T Consensus 24 G~vPaViYG 32 (94)
T d1dfup_ 24 NKFPAIIYG 32 (94)
T ss_dssp TEEEEEEEC
T ss_pred CCccEEEEC
Confidence 788998873
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.83 E-value=1.4e+02 Score=18.83 Aligned_cols=9 Identities=44% Similarity=0.574 Sum_probs=4.9
Q ss_pred HHHHHhccc
Q 034455 11 ILLAVLLPP 19 (94)
Q Consensus 11 iiLAi~lPP 19 (94)
.++++.+||
T Consensus 19 ~~~~f~lp~ 27 (260)
T d1oedc_ 19 ASLAFYLPA 27 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHeeeCC
Confidence 344555666
No 5
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.40 E-value=53 Score=20.03 Aligned_cols=13 Identities=38% Similarity=0.996 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhh
Q 034455 34 CICLLLTILGYVP 46 (94)
Q Consensus 34 ~InllLTllGwiP 46 (94)
-+|-++.++|++|
T Consensus 76 Av~tLi~iLG~iP 88 (89)
T d1rfya_ 76 ALNTLISILGFIP 88 (89)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHhccCC
Confidence 4678888899887
No 6
>d1sg1x1 g.24.1.1 (X:2-56) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.25 E-value=41 Score=18.99 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=11.8
Q ss_pred eeeeeeccCCCCccc
Q 034455 78 TFSAFCLPSSHFSDQ 92 (94)
Q Consensus 78 ~~~~~~~~~~~~~~~ 92 (94)
|--.-|++|..|||-
T Consensus 33 T~CepCld~~TFSd~ 47 (55)
T d1sg1x1 33 TVCEPCLDNVTFSDV 47 (55)
T ss_dssp CEEEECCTTTEECCS
T ss_pred ceeeeccCCcccccc
Confidence 445679999999985
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.97 E-value=1.5e+02 Score=14.50 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhe
Q 034455 31 VEFCICLLLTILGYVPGIIYAL 52 (94)
Q Consensus 31 ~~~~InllLTllGwiPGiIHA~ 52 (94)
.-|.|-++--++|.--|+|+|+
T Consensus 5 avfyivfialffgiavgiifai 26 (32)
T d2e74e1 5 AVFYIVFIALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHhhheeeE
Confidence 3455666667778778888875
No 8
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=6.42 E-value=82 Score=20.34 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHHHhhhhhhh
Q 034455 29 CSVEFCICLLLTILGYVPGIIY 50 (94)
Q Consensus 29 ~~~~~~InllLTllGwiPGiIH 50 (94)
.+.+.+-|+.|=++|+.|++=+
T Consensus 69 lt~~vFY~VALQLLgF~~~~DF 90 (145)
T d1lnsa1 69 LDWEIFWNIALQLLDFVPNFDF 90 (145)
T ss_dssp CCHHHHHHHHHHHTTCCBTTTB
T ss_pred CCHHHHHHHHHHHcCCcccccc
Confidence 7889999999999999988643
No 9
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.30 E-value=13 Score=26.71 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=20.3
Q ss_pred HhhhhhhhheeeEEeeCcchhhhccCccceeee
Q 034455 43 GYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPY 75 (94)
Q Consensus 43 GwiPGiIHA~yvi~~~~~~~~~~~grRp~~~~~ 75 (94)
+.+||+|-|+|+.-..-+++..++..|=++..|
T Consensus 4 f~~p~~Vial~i~g~~~~~e~~~e~~ryL~~~Q 36 (279)
T d1w6ka2 4 FLLPGLLITCHVARIPLPAGYREEIVRYLRSVQ 36 (279)
T ss_dssp SHHHHHHHHHHHHTCCCCTTHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhh
Confidence 568999999998754444444444444444433
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.11 E-value=41 Score=20.16 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHhhhhhhhheee
Q 034455 30 SVEFCICLLLTILGYVPGIIYALYA 54 (94)
Q Consensus 30 ~~~~~InllLTllGwiPGiIHA~yv 54 (94)
+.++|-+ +|+++-+|+++-+.+-
T Consensus 12 ~~~lWkk--is~~va~P~i~l~~~n 34 (84)
T d1v54g_ 12 GARTWRF--LTFGLALPSVALCTLN 34 (84)
T ss_dssp CHHHHHH--HHHHTHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 5677774 5777888888766443
Done!