Query 034456
Match_columns 94
No_of_seqs 104 out of 142
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1330 Sugar transporter/spin 99.1 3.2E-11 7E-16 100.7 1.9 67 1-67 387-463 (493)
2 TIGR00805 oat sodium-independe 96.5 0.0073 1.6E-07 51.1 6.3 54 1-54 556-630 (633)
3 PRK09556 uhpT sugar phosphate 95.1 0.025 5.4E-07 44.7 3.4 45 5-49 391-446 (467)
4 TIGR00892 2A0113 monocarboxyla 94.2 0.027 5.9E-07 44.8 1.8 47 9-55 378-424 (455)
5 KOG3626 Organic anion transpor 94.0 0.28 6E-06 43.6 7.8 27 1-27 624-650 (735)
6 PRK15462 dipeptide/tripeptide 91.2 0.33 7.2E-06 40.6 4.3 52 2-55 141-192 (493)
7 PRK09584 tppB putative tripept 90.9 0.29 6.2E-06 39.9 3.6 48 9-57 159-206 (500)
8 PRK11273 glpT sn-glycerol-3-ph 90.7 0.32 6.9E-06 38.3 3.6 38 9-47 393-430 (452)
9 PF11700 ATG22: Vacuole efflux 88.2 0.6 1.3E-05 38.6 3.6 34 15-48 431-464 (477)
10 PRK03893 putative sialic acid 87.8 0.71 1.5E-05 36.1 3.6 36 10-46 412-447 (496)
11 PRK03699 putative transporter; 87.6 0.66 1.4E-05 35.6 3.3 47 7-54 336-382 (394)
12 TIGR00712 glpT glycerol-3-phos 87.1 1 2.2E-05 35.3 4.1 44 3-47 385-428 (438)
13 PRK09528 lacY galactoside perm 87.0 0.69 1.5E-05 35.7 3.1 40 8-48 360-399 (420)
14 TIGR00889 2A0110 nucleoside tr 86.6 0.81 1.8E-05 36.1 3.4 41 7-47 352-397 (418)
15 PRK09705 cynX putative cyanate 86.1 0.98 2.1E-05 34.9 3.5 35 14-48 343-377 (393)
16 PRK10207 dipeptide/tripeptide 85.5 0.77 1.7E-05 37.6 2.8 43 11-54 154-196 (489)
17 PRK10133 L-fucose transporter; 84.8 1.9 4.1E-05 34.4 4.7 35 5-39 386-420 (438)
18 PRK11663 regulatory protein Uh 83.5 1.3 2.8E-05 34.7 3.2 39 9-48 382-420 (434)
19 TIGR00886 2A0108 nitrite extru 83.4 1.3 2.8E-05 32.8 3.0 31 5-36 42-72 (366)
20 TIGR00890 2A0111 Oxalate/Forma 83.4 0.91 2E-05 33.0 2.1 33 5-38 43-75 (377)
21 KOG0569 Permease of the major 83.0 1.5 3.3E-05 37.0 3.6 50 4-54 64-113 (485)
22 TIGR00893 2A0114 d-galactonate 82.9 1.5 3.2E-05 31.7 3.1 41 9-49 356-396 (399)
23 COG0738 FucP Fucose permease [ 82.3 2.2 4.8E-05 35.9 4.2 39 6-45 364-402 (422)
24 TIGR01272 gluP glucose/galacto 82.0 1.8 4E-05 33.0 3.4 29 7-36 271-299 (310)
25 PRK05122 major facilitator sup 82.0 1.6 3.4E-05 33.1 3.1 37 10-47 348-384 (399)
26 PRK09874 drug efflux system pr 80.9 2.9 6.2E-05 31.5 4.1 39 9-48 356-394 (408)
27 TIGR00883 2A0106 metabolite-pr 80.0 3.1 6.7E-05 30.4 3.9 38 7-45 42-79 (394)
28 TIGR00881 2A0104 phosphoglycer 78.6 1.6 3.5E-05 31.7 2.1 24 5-28 35-58 (379)
29 TIGR00892 2A0113 monocarboxyla 77.5 2.8 6.2E-05 33.3 3.3 37 10-47 153-189 (455)
30 PRK10489 enterobactin exporter 77.5 6.4 0.00014 30.2 5.2 32 8-40 356-387 (417)
31 TIGR00924 yjdL_sub1_fam amino 77.3 2.4 5.3E-05 34.3 2.9 43 8-51 149-191 (475)
32 PRK12382 putative transporter; 76.9 2.4 5.2E-05 32.1 2.7 32 5-37 56-87 (392)
33 KOG2504 Monocarboxylate transp 76.8 0.74 1.6E-05 38.5 -0.2 44 12-55 436-480 (509)
34 PRK09528 lacY galactoside perm 76.7 3.5 7.6E-05 31.8 3.6 29 5-34 51-79 (420)
35 TIGR00900 2A0121 H+ Antiporter 76.2 3.4 7.4E-05 29.9 3.2 31 5-36 39-69 (365)
36 PRK10091 MFS transport protein 75.9 2.7 5.8E-05 32.1 2.7 47 8-54 332-378 (382)
37 PRK05122 major facilitator sup 75.9 2.2 4.7E-05 32.4 2.1 34 5-39 56-89 (399)
38 KOG0255 Synaptic vesicle trans 75.8 2.2 4.9E-05 34.1 2.3 40 5-45 123-162 (521)
39 PRK03633 putative MFS family t 75.4 5 0.00011 30.5 4.1 31 5-36 46-76 (381)
40 TIGR00891 2A0112 putative sial 75.1 3.9 8.5E-05 30.3 3.3 35 6-41 53-87 (405)
41 cd06174 MFS The Major Facilita 74.0 2.8 6E-05 29.9 2.2 39 5-44 39-77 (352)
42 PRK03545 putative arabinose tr 73.9 4.8 0.0001 30.6 3.6 38 10-48 339-376 (390)
43 PRK14995 methyl viologen resis 73.3 3 6.4E-05 33.5 2.5 36 8-44 139-174 (495)
44 TIGR00894 2A0114euk Na(+)-depe 72.9 1.9 4.2E-05 33.7 1.3 41 9-49 405-447 (465)
45 TIGR00898 2A0119 cation transp 72.7 4.1 8.8E-05 32.1 3.1 39 5-44 132-170 (505)
46 PRK10473 multidrug efflux syst 72.4 3.7 8.1E-05 31.1 2.7 31 5-36 43-73 (392)
47 PRK15011 sugar efflux transpor 72.2 4.1 8.9E-05 31.3 2.9 35 10-45 153-187 (393)
48 TIGR00895 2A0115 benzoate tran 71.9 5.8 0.00012 29.1 3.5 32 6-38 58-89 (398)
49 TIGR00880 2_A_01_02 Multidrug 71.7 4.9 0.00011 24.7 2.7 38 9-47 96-133 (141)
50 TIGR00879 SP MFS transporter, 71.1 5.6 0.00012 29.7 3.4 41 5-46 76-116 (481)
51 COG2271 UhpC Sugar phosphate p 70.5 6.8 0.00015 33.3 4.1 50 7-61 160-211 (448)
52 PF06716 DUF1201: Protein of u 70.0 15 0.00033 22.6 4.5 36 30-65 11-48 (54)
53 PRK12307 putative sialic acid 69.4 5.3 0.00011 30.5 3.0 32 5-37 58-89 (426)
54 PF12832 MFS_1_like: MFS_1 lik 69.3 4.6 0.0001 25.6 2.2 20 15-34 50-69 (77)
55 PRK09874 drug efflux system pr 69.3 6.3 0.00014 29.6 3.3 24 5-28 59-82 (408)
56 PF07690 MFS_1: Major Facilita 69.2 1.7 3.7E-05 31.4 0.2 37 9-46 130-166 (352)
57 TIGR00900 2A0121 H+ Antiporter 68.6 7.8 0.00017 28.0 3.6 38 8-46 136-173 (365)
58 PRK12382 putative transporter; 68.1 6.2 0.00014 29.9 3.1 39 9-48 347-385 (392)
59 PRK11128 putative 3-phenylprop 67.7 4.4 9.6E-05 30.9 2.2 33 10-43 138-170 (382)
60 TIGR00899 2A0120 sugar efflux 67.5 4.8 0.0001 29.7 2.3 37 11-48 334-370 (375)
61 TIGR00710 efflux_Bcr_CflA drug 67.3 4.8 0.0001 29.7 2.3 38 5-43 45-82 (385)
62 COG2814 AraJ Arabinose efflux 67.1 12 0.00025 31.1 4.7 32 14-46 151-182 (394)
63 PRK11663 regulatory protein Uh 66.8 6 0.00013 31.0 2.9 37 8-45 155-191 (434)
64 TIGR00885 fucP L-fucose:H+ sym 65.9 12 0.00025 29.6 4.4 28 9-36 364-396 (410)
65 TIGR00924 yjdL_sub1_fam amino 65.8 7.2 0.00016 31.6 3.2 38 5-43 53-91 (475)
66 TIGR00883 2A0106 metabolite-pr 65.7 5.4 0.00012 29.1 2.3 34 5-38 354-387 (394)
67 TIGR00899 2A0120 sugar efflux 65.6 8 0.00017 28.5 3.2 36 10-46 135-170 (375)
68 TIGR00882 2A0105 oligosacchari 65.2 8 0.00017 29.5 3.2 24 6-29 44-67 (396)
69 KOG0254 Predicted transporter 65.2 9.1 0.0002 31.0 3.7 46 5-51 94-139 (513)
70 TIGR00893 2A0114 d-galactonate 65.0 3.6 7.7E-05 29.7 1.2 24 5-28 34-57 (399)
71 PRK10642 proline/glycine betai 64.6 8.1 0.00018 30.9 3.3 35 6-41 63-97 (490)
72 PRK03893 putative sialic acid 63.8 9.1 0.0002 29.9 3.4 33 5-38 60-92 (496)
73 COG2271 UhpC Sugar phosphate p 62.9 3.2 7E-05 35.2 0.7 47 6-53 389-435 (448)
74 PRK09952 shikimate transporter 62.9 10 0.00023 29.8 3.6 36 8-44 72-107 (438)
75 TIGR01299 synapt_SV2 synaptic 61.8 8.7 0.00019 33.9 3.2 24 5-28 207-230 (742)
76 PF03825 Nuc_H_symport: Nucleo 61.7 16 0.00035 29.4 4.5 18 14-31 51-68 (400)
77 PRK10091 MFS transport protein 61.4 8.3 0.00018 29.4 2.7 36 9-45 136-171 (382)
78 COG2807 CynX Cyanate permease 61.3 9.8 0.00021 31.9 3.3 27 14-40 347-373 (395)
79 PRK03545 putative arabinose tr 61.3 8.7 0.00019 29.3 2.8 35 10-45 143-177 (390)
80 PF05977 MFS_3: Transmembrane 60.5 24 0.00052 29.7 5.5 36 13-49 356-391 (524)
81 TIGR00890 2A0111 Oxalate/Forma 59.4 17 0.00036 26.4 3.9 28 9-37 249-276 (377)
82 PRK10504 putative transporter; 59.0 12 0.00026 29.2 3.3 36 10-46 144-179 (471)
83 PRK11652 emrD multidrug resist 58.6 9.4 0.0002 28.9 2.6 25 5-29 48-72 (394)
84 PRK03633 putative MFS family t 58.3 10 0.00022 28.9 2.7 36 8-44 329-364 (381)
85 TIGR00880 2_A_01_02 Multidrug 57.8 12 0.00026 22.8 2.6 17 12-28 10-26 (141)
86 PRK03699 putative transporter; 57.8 15 0.00034 28.1 3.6 31 5-36 47-77 (394)
87 TIGR00710 efflux_Bcr_CflA drug 57.7 13 0.00027 27.5 3.0 39 8-47 137-175 (385)
88 TIGR00711 efflux_EmrB drug res 57.5 6.7 0.00014 30.3 1.6 37 8-45 134-170 (485)
89 PRK15402 multidrug efflux syst 57.4 12 0.00025 28.7 2.9 23 6-28 54-76 (406)
90 cd06174 MFS The Major Facilita 57.1 17 0.00037 25.8 3.6 37 9-46 132-168 (352)
91 PF03137 OATP: Organic Anion T 56.9 3.6 7.8E-05 34.7 0.0 27 1-27 489-515 (539)
92 PRK10207 dipeptide/tripeptide 56.8 18 0.00038 29.6 4.0 28 16-44 66-94 (489)
93 PRK10213 nepI ribonucleoside t 56.8 12 0.00026 29.0 2.9 34 6-40 61-94 (394)
94 PF07690 MFS_1: Major Facilita 56.8 14 0.00031 26.6 3.1 37 7-44 39-75 (352)
95 TIGR00711 efflux_EmrB drug res 56.0 11 0.00023 29.2 2.5 34 6-40 43-76 (485)
96 PRK15034 nitrate/nitrite trans 55.8 18 0.0004 30.2 4.0 13 17-29 303-315 (462)
97 PF12273 RCR: Chitin synthesis 55.5 8.9 0.00019 26.3 1.8 10 52-61 20-29 (130)
98 TIGR00902 2A0127 phenyl propri 55.5 13 0.00027 28.5 2.8 32 8-40 136-167 (382)
99 TIGR00712 glpT glycerol-3-phos 55.0 24 0.00051 27.6 4.3 40 8-47 162-201 (438)
100 TIGR00903 2A0129 major facilit 54.2 15 0.00032 28.7 3.0 40 7-47 121-160 (368)
101 PRK11043 putative transporter; 53.8 22 0.00048 27.0 3.9 35 11-46 141-175 (401)
102 PRK11102 bicyclomycin/multidru 52.6 16 0.00034 27.3 2.8 37 10-47 125-161 (377)
103 PRK11551 putative 3-hydroxyphe 52.4 13 0.00027 28.2 2.4 23 6-28 56-78 (406)
104 PRK11010 ampG muropeptide tran 52.3 17 0.00036 29.5 3.2 38 10-48 362-399 (491)
105 PRK09952 shikimate transporter 52.0 16 0.00035 28.8 2.9 42 6-47 386-428 (438)
106 PRK10077 xylE D-xylose transpo 51.9 17 0.00038 28.1 3.1 39 5-44 60-98 (479)
107 PRK15011 sugar efflux transpor 51.5 15 0.00033 28.2 2.7 36 11-47 351-386 (393)
108 TIGR01299 synapt_SV2 synaptic 51.5 15 0.00033 32.4 3.0 23 6-28 601-623 (742)
109 PRK11646 multidrug resistance 51.5 20 0.00043 27.9 3.4 21 8-28 54-74 (400)
110 COG2223 NarK Nitrate/nitrite t 51.2 14 0.0003 31.1 2.6 17 18-34 272-288 (417)
111 PRK10642 proline/glycine betai 50.9 23 0.00049 28.4 3.7 25 5-29 291-315 (490)
112 PF15061 DUF4538: Domain of un 50.3 13 0.00028 23.4 1.8 26 28-53 3-28 (58)
113 PRK08633 2-acyl-glycerophospho 49.3 21 0.00045 31.2 3.4 21 8-28 55-75 (1146)
114 TIGR02718 sider_RhtX_FptX side 49.3 18 0.0004 27.5 2.8 35 10-45 350-384 (390)
115 PF03219 TLC: TLC ATP/ADP tran 49.2 43 0.00094 28.3 5.2 26 30-55 348-373 (491)
116 PRK11652 emrD multidrug resist 48.8 19 0.0004 27.3 2.8 34 8-42 140-173 (394)
117 PF00854 PTR2: POT family; In 48.8 8.8 0.00019 29.6 1.0 38 14-52 86-123 (372)
118 PRK10406 alpha-ketoglutarate t 48.6 23 0.0005 27.6 3.4 30 11-41 74-103 (432)
119 TIGR00792 gph sugar (Glycoside 48.6 6.6 0.00014 30.0 0.3 24 5-28 40-63 (437)
120 PRK11551 putative 3-hydroxyphe 48.5 32 0.0007 26.0 4.0 24 6-29 261-284 (406)
121 TIGR00879 SP MFS transporter, 48.4 7.9 0.00017 28.9 0.7 39 8-47 427-465 (481)
122 PRK10489 enterobactin exporter 48.0 27 0.00058 26.8 3.6 36 8-44 154-189 (417)
123 PLN00028 nitrate transmembrane 47.0 23 0.00049 28.5 3.1 23 6-28 77-99 (476)
124 TIGR00887 2A0109 phosphate:H+ 46.5 23 0.0005 28.3 3.1 31 5-36 61-91 (502)
125 TIGR00894 2A0114euk Na(+)-depe 46.5 18 0.00039 28.3 2.5 32 5-37 81-112 (465)
126 PRK15462 dipeptide/tripeptide 45.9 21 0.00046 30.0 2.9 26 11-37 56-82 (493)
127 PRK10429 melibiose:sodium symp 45.8 6.1 0.00013 31.5 -0.3 20 8-27 50-69 (473)
128 PRK09705 cynX putative cyanate 45.6 22 0.00047 27.5 2.7 35 5-40 49-83 (393)
129 PF06679 DUF1180: Protein of u 45.6 53 0.0011 24.3 4.6 28 30-57 94-121 (163)
130 PRK10473 multidrug efflux syst 45.3 25 0.00054 26.6 3.0 36 10-46 137-172 (392)
131 PRK15403 multidrug efflux syst 45.2 19 0.00041 28.2 2.4 24 5-28 56-79 (413)
132 TIGR00882 2A0105 oligosacchari 45.0 24 0.00051 26.9 2.8 37 7-44 351-387 (396)
133 PRK15403 multidrug efflux syst 44.5 42 0.00091 26.3 4.2 34 11-45 151-184 (413)
134 TIGR00805 oat sodium-independe 44.2 43 0.00093 28.6 4.5 42 6-47 214-276 (633)
135 TIGR00896 CynX cyanate transpo 44.1 29 0.00062 25.9 3.1 23 6-28 238-260 (355)
136 TIGR00887 2A0109 phosphate:H+ 43.7 39 0.00085 27.0 4.0 24 6-29 341-364 (502)
137 PRK11195 lysophospholipid tran 43.3 25 0.00054 27.3 2.8 32 9-41 47-78 (393)
138 PF00939 Na_sulph_symp: Sodium 43.3 36 0.00078 27.7 3.8 50 10-59 191-244 (471)
139 TIGR02332 HpaX 4-hydroxyphenyl 43.1 6.8 0.00015 30.6 -0.4 32 11-42 380-411 (412)
140 TIGR00897 2A0118 polyol permea 42.9 30 0.00066 26.6 3.2 32 5-37 53-84 (402)
141 PRK14995 methyl viologen resis 42.6 28 0.00061 27.9 3.1 34 8-42 49-82 (495)
142 PRK11273 glpT sn-glycerol-3-ph 42.6 15 0.00034 28.8 1.6 23 6-28 69-91 (452)
143 PRK15075 citrate-proton sympor 42.2 52 0.0011 25.7 4.4 27 14-41 70-96 (434)
144 PRK10213 nepI ribonucleoside t 41.5 22 0.00047 27.6 2.2 32 10-42 154-185 (394)
145 PF06609 TRI12: Fungal trichot 41.4 19 0.00041 31.3 2.0 40 6-46 84-123 (599)
146 PRK10054 putative transporter; 40.9 26 0.00057 27.2 2.6 20 10-29 53-72 (395)
147 COG3202 ATP/ADP translocase [E 40.5 72 0.0016 27.7 5.3 30 29-58 350-379 (509)
148 PRK11102 bicyclomycin/multidru 40.4 55 0.0012 24.3 4.1 20 9-28 239-258 (377)
149 PF05546 She9_MDM33: She9 / Md 40.4 74 0.0016 24.5 4.9 32 22-55 142-173 (207)
150 KOG2532 Permease of the major 40.2 9.6 0.00021 31.7 0.1 38 14-51 407-446 (466)
151 TIGR00896 CynX cyanate transpo 39.8 30 0.00065 25.8 2.7 32 6-38 41-72 (355)
152 PLN02776 prenyltransferase 39.5 23 0.0005 28.8 2.1 19 7-25 125-145 (341)
153 PRK10504 putative transporter; 39.1 43 0.00093 26.1 3.5 22 7-28 52-73 (471)
154 PRK15402 multidrug efflux syst 38.8 21 0.00046 27.2 1.8 35 11-46 148-182 (406)
155 TIGR00885 fucP L-fucose:H+ sym 38.6 43 0.00093 26.4 3.5 35 5-40 43-77 (410)
156 TIGR00889 2A0110 nucleoside tr 38.4 39 0.00084 26.6 3.2 28 7-34 45-72 (418)
157 KOG2816 Predicted transporter 38.4 47 0.001 27.7 3.8 14 15-28 77-90 (463)
158 PF11755 DUF3311: Protein of u 38.3 49 0.0011 20.6 3.1 20 35-54 33-52 (66)
159 PRK09584 tppB putative tripept 38.0 58 0.0013 26.6 4.2 14 15-28 72-86 (500)
160 KOG2615 Permease of the major 37.9 30 0.00065 29.6 2.6 41 10-51 78-118 (451)
161 PRK09848 glucuronide transport 37.8 16 0.00035 28.6 1.0 24 5-28 49-72 (448)
162 COG3104 PTR2 Dipeptide/tripept 37.6 40 0.00087 29.1 3.4 44 11-55 166-209 (498)
163 PRK11043 putative transporter; 37.4 28 0.00062 26.4 2.2 23 6-28 47-69 (401)
164 PRK11902 ampG muropeptide tran 37.4 49 0.0011 25.4 3.6 37 10-47 349-385 (402)
165 PRK15075 citrate-proton sympor 37.3 44 0.00096 26.0 3.4 19 10-28 378-396 (434)
166 PRK09669 putative symporter Ya 36.0 11 0.00023 29.6 -0.3 25 4-28 49-73 (444)
167 PF01306 LacY_symp: LacY proto 34.9 20 0.00044 29.7 1.2 32 16-48 59-91 (412)
168 TIGR00897 2A0118 polyol permea 34.4 53 0.0012 25.2 3.4 37 8-45 358-394 (402)
169 PF01306 LacY_symp: LacY proto 34.4 1.2E+02 0.0027 25.2 5.6 42 16-61 365-406 (412)
170 PRK12307 putative sialic acid 34.2 39 0.00085 25.7 2.5 28 10-38 367-394 (426)
171 COG5336 Uncharacterized protei 34.0 50 0.0011 23.5 2.8 30 17-46 59-89 (116)
172 TIGR00902 2A0127 phenyl propri 33.1 46 0.001 25.4 2.8 35 8-44 337-371 (382)
173 PF15048 OSTbeta: Organic solu 32.7 87 0.0019 22.5 3.9 26 30-55 35-60 (125)
174 TIGR02332 HpaX 4-hydroxyphenyl 32.7 66 0.0014 25.1 3.6 27 11-38 54-80 (412)
175 PF05337 CSF-1: Macrophage col 32.5 15 0.00032 29.7 0.0 30 54-83 248-277 (285)
176 PRK11646 multidrug resistance 32.3 50 0.0011 25.6 2.9 35 11-47 146-180 (400)
177 TIGR00891 2A0112 putative sial 31.7 56 0.0012 24.1 3.0 22 8-29 282-303 (405)
178 PRK10054 putative transporter; 31.7 42 0.00092 26.0 2.4 33 11-45 143-175 (395)
179 PRK10133 L-fucose transporter; 31.6 68 0.0015 25.5 3.6 38 7-45 68-105 (438)
180 PRK10692 hypothetical protein; 31.5 44 0.00094 22.9 2.1 23 33-55 42-64 (92)
181 TIGR02718 sider_RhtX_FptX side 31.3 49 0.0011 25.1 2.7 34 12-46 145-178 (390)
182 TIGR00895 2A0115 benzoate tran 31.1 18 0.00039 26.5 0.3 35 8-43 149-183 (398)
183 TIGR00769 AAA ADP/ATP carrier 30.2 1.4E+02 0.0031 25.1 5.4 33 21-54 324-356 (472)
184 COG3104 PTR2 Dipeptide/tripept 29.1 76 0.0016 27.4 3.7 29 16-44 77-105 (498)
185 KOG2533 Permease of the major 28.7 90 0.0019 26.4 4.0 35 11-45 320-357 (495)
186 PLN00028 nitrate transmembrane 28.6 22 0.00048 28.5 0.4 38 14-51 393-432 (476)
187 TIGR00788 fbt folate/biopterin 27.8 72 0.0016 25.8 3.2 33 11-44 169-201 (468)
188 PRK09556 uhpT sugar phosphate 27.6 55 0.0012 25.9 2.4 19 10-28 304-322 (467)
189 TIGR00901 2A0125 AmpG-related 27.3 1.5E+02 0.0033 21.9 4.7 15 14-28 259-273 (356)
190 PF10762 DUF2583: Protein of u 27.3 54 0.0012 22.3 2.0 21 35-55 44-64 (89)
191 PF13347 MFS_2: MFS/sugar tran 26.7 6.3 0.00014 30.7 -3.0 16 12-27 49-64 (428)
192 PF00083 Sugar_tr: Sugar (and 26.6 5.9 0.00013 30.5 -3.1 46 5-51 51-96 (451)
193 PF15345 TMEM51: Transmembrane 26.1 42 0.00091 26.4 1.5 18 42-59 66-83 (233)
194 PRK10429 melibiose:sodium symp 26.0 36 0.00079 27.1 1.2 18 10-27 377-394 (473)
195 TIGR01301 GPH_sucrose GPH fami 25.7 34 0.00073 28.7 1.0 21 6-26 45-65 (477)
196 PF03904 DUF334: Domain of unk 25.6 3E+02 0.0065 21.6 6.1 51 3-53 163-224 (230)
197 PF11511 RhodobacterPufX: Intr 24.5 1.2E+02 0.0026 19.6 3.1 25 32-56 30-54 (67)
198 PRK11902 ampG muropeptide tran 24.5 1.6E+02 0.0034 22.6 4.4 17 12-28 258-274 (402)
199 TIGR00881 2A0104 phosphoglycer 24.3 73 0.0016 23.0 2.4 34 11-45 130-164 (379)
200 COG2814 AraJ Arabinose efflux 24.2 95 0.0021 25.8 3.3 44 2-46 50-93 (394)
201 smart00549 TAFH TAF homology. 24.2 1.4E+02 0.003 20.4 3.6 27 13-39 55-81 (92)
202 KOG3827 Inward rectifier K+ ch 23.5 2.1E+02 0.0045 24.3 5.2 31 22-52 49-89 (400)
203 PF11119 DUF2633: Protein of u 23.5 2E+02 0.0042 18.2 3.9 33 34-66 13-46 (59)
204 PF15065 NCU-G1: Lysosomal tra 23.4 80 0.0017 25.9 2.7 29 12-48 312-340 (350)
205 PF06963 FPN1: Ferroportin1 (F 23.3 1.9E+02 0.0042 24.0 5.0 49 10-59 159-209 (432)
206 PRK10077 xylE D-xylose transpo 23.0 1.1E+02 0.0025 23.6 3.4 15 14-28 320-334 (479)
207 PRK11010 ampG muropeptide tran 22.9 1.7E+02 0.0037 23.7 4.5 20 10-29 269-288 (491)
208 PRK06814 acylglycerophosphoeth 22.7 1.2E+02 0.0026 27.0 3.8 49 5-54 57-105 (1140)
209 PRK10873 hypothetical protein; 22.7 2.8E+02 0.0061 19.5 6.7 25 4-28 21-45 (131)
210 PRK10406 alpha-ketoglutarate t 22.7 1E+02 0.0023 24.0 3.1 40 6-46 379-418 (432)
211 PTZ00207 hypothetical protein; 22.6 1.5E+02 0.0033 25.7 4.3 24 19-43 80-103 (591)
212 PF13268 DUF4059: Protein of u 22.0 1.6E+02 0.0034 19.3 3.4 33 32-64 11-43 (72)
213 PF01102 Glycophorin_A: Glycop 21.9 1.5E+02 0.0032 20.9 3.5 6 56-61 89-94 (122)
214 PF11027 DUF2615: Protein of u 21.9 1.1E+02 0.0024 21.1 2.8 19 32-50 54-72 (103)
215 TIGR00792 gph sugar (Glycoside 21.8 1.2E+02 0.0026 23.1 3.3 19 10-28 267-285 (437)
216 COG3086 RseC Positive regulato 21.7 3.1E+02 0.0068 20.3 5.2 21 43-63 113-133 (150)
217 PF03825 Nuc_H_symport: Nucleo 21.5 1.3E+02 0.0027 24.3 3.5 35 10-45 348-382 (400)
218 PF12501 DUF3708: Phosphate AT 21.4 2.3E+02 0.005 20.7 4.6 39 9-48 128-170 (170)
219 COG1268 BioY Uncharacterized c 21.3 1.6E+02 0.0034 22.1 3.7 19 11-29 93-111 (184)
No 1
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.09 E-value=3.2e-11 Score=100.74 Aligned_cols=67 Identities=28% Similarity=0.337 Sum_probs=58.7
Q ss_pred ChhhHhHHHhcCCCCchhHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 034456 1 MAISTVSIHIFGDVPSSPLVGVLQDRVNNWR----------ETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDK 67 (94)
Q Consensus 1 mA~~~~~iHllGDapSP~LiG~iSD~i~~lr----------~al~i~~~~l~la~~~~~~~a~~~~~dr~~~~~~~~ 67 (94)
+|++++++|+|||+++|||+|++||++++++ .++..|.+.+..++..+....+....||++.....+
T Consensus 387 ~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~~~~~~~~~~~s~~~~a~~l~~a~~~~~~~~f~v~~d~~~~~~~~~ 463 (493)
T KOG1330|consen 387 YALDTVFEHIFGDAASPYIVGILSDKLRGYKPAGGIDSVLQTSLRLCAALLAKALIWSIGSPFGVCCDRYSFLYFVQ 463 (493)
T ss_pred HHHHHHHHHHhccCCCcceehhHHHHhhCCCccccccccccchhhhhHHHHHHHHHHhhccceeeeecccccccccc
Confidence 4789999999999999999999999997555 788999999999988877778888999999886444
No 2
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.51 E-value=0.0073 Score=51.08 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=39.9
Q ss_pred ChhhHhHHHhcCCCCchhHHHHHHHhH--------------------HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 034456 1 MAISTVSIHIFGDVPSSPLVGVLQDRV--------------------NNWRETALILTAIL-FPAAAIWFIGIFL 54 (94)
Q Consensus 1 mA~~~~~iHllGDapSP~LiG~iSD~i--------------------~~lr~al~i~~~~l-~la~~~~~~~a~~ 54 (94)
+++|.+++++||..|+|.+.|++-|+- +.+|+.+....+.+ +++.++++++.++
T Consensus 556 lg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~~cg~~g~C~~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (633)
T TIGR00805 556 IGLQWLCMRVFATIPAPILFGLLIDVSCLHWQTLCCGARGACRMYDNDNLRNIYLGLTIALRGSGLLLLFFILIL 630 (633)
T ss_pred hhHHHHHHHHhcCCChhHHHhhhhhchhheeccccCCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 468999999999999999999999965 23887776554444 4555555555544
No 3
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=95.07 E-value=0.025 Score=44.74 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=34.9
Q ss_pred HhHHHhcCCCCchhHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDR-----------VNNWRETALILTAILFPAAAIWF 49 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~-----------i~~lr~al~i~~~~l~la~~~~~ 49 (94)
....-++|++.+|+++|++.|. ..+|+.+++++....+++.++++
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 3455667999999999999992 23499999988888888766654
No 4
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=94.21 E-value=0.027 Score=44.76 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=40.0
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~ 55 (94)
.-+|=..+|++.|++.|..++++..++++..+++++++++.++..+.
T Consensus 378 ~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~~~~~~ 424 (455)
T TIGR00892 378 ECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAIGNYIN 424 (455)
T ss_pred HHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45678889999999999987799999999999998888777776655
No 5
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.03 E-value=0.28 Score=43.60 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.9
Q ss_pred ChhhHhHHHhcCCCCchhHHHHHHHhH
Q 034456 1 MAISTVSIHIFGDVPSSPLVGVLQDRV 27 (94)
Q Consensus 1 mA~~~~~iHllGDapSP~LiG~iSD~i 27 (94)
|++|.+++-+||=-|||.+.|++-|.-
T Consensus 624 lG~~~~~irllg~IPsPIifG~~ID~t 650 (735)
T KOG3626|consen 624 LGFQWMLIRLLGFIPSPIIFGAVIDTT 650 (735)
T ss_pred hHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence 578999999999999999999999954
No 6
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=91.16 E-value=0.33 Score=40.58 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=40.9
Q ss_pred hhhHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456 2 AISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 2 A~~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~ 55 (94)
++.-..++ +|-..+|++.|++.++.+ ||.+|.++...++++.+.|+.+....
T Consensus 141 ~i~Y~~~n-lG~~iap~l~g~L~~~~G-w~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 141 SLMYAAGN-VGSIIAPIACGYAQEEYS-WAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34555666 588999999999999887 99999998888888877776655443
No 7
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=90.94 E-value=0.29 Score=39.92 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=37.8
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSV 57 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~~~ 57 (94)
.-+|=+.+|.+.|++.|+.+ ||++++++...++++.+.|+....+..+
T Consensus 159 ~~iG~~~gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 159 INIGSFFSMLATPWLAAKYG-WSVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred HHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 34567789999999999887 9999999988888887777666555443
No 8
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=90.68 E-value=0.32 Score=38.32 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=29.0
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
.+-|-..+|++.|++.|+.+ ++.+++++....+++.++
T Consensus 393 ~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 393 YLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHH
Confidence 33334457999999999988 999999888877776544
No 9
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=88.15 E-value=0.6 Score=38.64 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.6
Q ss_pred CchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 15 PSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 15 pSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
.+|.++|++.|..++.|++++...+.++++.+++
T Consensus 431 lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 431 LGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 4799999999999889999998888888877765
No 10
>PRK03893 putative sialic acid transporter; Provisional
Probab=87.75 E-value=0.71 Score=36.07 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=25.5
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
-+|...+|.+.|++.|+++ ++.++++......+.++
T Consensus 412 ~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~~~~~ 447 (496)
T PRK03893 412 ALGGALAPILGALIAQRLD-LGTALASLSFSLTFVVI 447 (496)
T ss_pred hHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHH
Confidence 3677889999999999987 77776555444444333
No 11
>PRK03699 putative transporter; Provisional
Probab=87.60 E-value=0.66 Score=35.62 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL 54 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~ 54 (94)
..+-+|-..+|++.|++.|+.+ ++.++++...+.+++.+.+++..++
T Consensus 336 ~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 336 TCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred HhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999877 8999888888877777665555554
No 12
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=87.11 E-value=1 Score=35.27 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=33.0
Q ss_pred hhHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 3 ISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 3 ~~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
+......+.|.+.+|++.|++.|+.+ +..+++++..+.+++.+.
T Consensus 385 ~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~ 428 (438)
T TIGR00712 385 FTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIL 428 (438)
T ss_pred hhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 34445566678899999999999887 888887777666665544
No 13
>PRK09528 lacY galactoside permease; Reviewed
Probab=87.02 E-value=0.69 Score=35.72 Aligned_cols=40 Identities=33% Similarity=0.369 Sum_probs=31.8
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
.+-+|-+.+|++.|++.|..+ +|.++.++..+.+++.+++
T Consensus 360 ~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 360 AKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHH
Confidence 466788899999999999987 9999988777666555443
No 14
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=86.63 E-value=0.81 Score=36.07 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=32.2
Q ss_pred HHHhcCCCCchhHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVN-----NWRETALILTAILFPAAAI 47 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~-----~lr~al~i~~~~l~la~~~ 47 (94)
..+-+|-+.+|++.|++.|+.+ +|+.+++++....+++++.
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l 397 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVL 397 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999974 3898888777776665543
No 15
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=86.14 E-value=0.98 Score=34.90 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=28.4
Q ss_pred CCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 14 VPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 14 apSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
..+|++.|++.|+.+++..+++++.+.++++.++.
T Consensus 343 ~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK09705 343 GLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT 377 (393)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 34899999999999888888888888777665443
No 16
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=85.51 E-value=0.77 Score=37.56 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=33.8
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL 54 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~ 54 (94)
+|-+.+|.+.|++.++.+ ||+++++++..++++.+.|+.+...
T Consensus 154 ig~~~g~~l~g~l~~~~g-w~~~F~i~~i~~~~~~~~~~~~~~~ 196 (489)
T PRK10207 154 IGSLISLSLAPVIADKFG-YSVTYNLCGAGLIIALLVYFACRGM 196 (489)
T ss_pred HHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHcchh
Confidence 466778999999999987 9999999887777776666655433
No 17
>PRK10133 L-fucose transporter; Provisional
Probab=84.78 E-value=1.9 Score=34.37 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=26.9
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA 39 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~ 39 (94)
++....+|.+..|+++|+++|+.+++|.++++...
T Consensus 386 l~~~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~ 420 (438)
T PRK10133 386 FIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_pred HHhHHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34456789999999999999987557888864433
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=83.54 E-value=1.3 Score=34.75 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=29.9
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
.-+|=+.+|+++|++.|+.+ |+..+.+...+.+++++.+
T Consensus 382 ~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 382 AYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999987 8888877777766665433
No 19
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=83.44 E-value=1.3 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 36 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i 36 (94)
+.....+|.+.+.++.|+++||++ -|..+.+
T Consensus 42 ~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~ 72 (366)
T TIGR00886 42 LVAVPVLAGAVLRIILGFLVDKFG-PRYTTTL 72 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhC-chHHHHH
Confidence 456788899999999999999997 3444433
No 20
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=83.40 E-value=0.91 Score=32.99 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=24.2
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 38 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~ 38 (94)
++.+..+|.+.+.++.|.++|+++ -|+.+.++.
T Consensus 43 ~~s~~~~~~~~~~~~~G~l~d~~G-~r~~~~~~~ 75 (377)
T TIGR00890 43 WFTLLLIGLAMSMPVGGLLADKFG-PRAVAMLGG 75 (377)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcC-ccchhHHhH
Confidence 456778888899999999999997 344444333
No 21
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=82.96 E-value=1.5 Score=37.00 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=43.4
Q ss_pred hHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 4 STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL 54 (94)
Q Consensus 4 ~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~ 54 (94)
.++.++.+|-+.+.++.|++.|+.+ -+.+++++.+..++++++.....++
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~G-RK~~l~~~~~l~~~~~~~~~~s~~~ 113 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFG-RKNALLLSNLLAVLAALLMGLSKSA 113 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999998 4789999999999999988777654
No 22
>TIGR00893 2A0114 d-galactonate transporter.
Probab=82.93 E-value=1.5 Score=31.71 Aligned_cols=41 Identities=10% Similarity=0.313 Sum_probs=32.6
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF 49 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~ 49 (94)
.-+|-+.+|++.|++.|..++++..+.++....+++.+.++
T Consensus 356 ~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 356 GNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999887788888877777777666543
No 23
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=82.25 E-value=2.2 Score=35.89 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=26.9
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
++.-..|.+.=|++.|+++|+.+ .+..+.+.|..+.+-.
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~pllc~lyV 402 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 34456899999999999999998 4555444444444333
No 24
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=82.01 E-value=1.8 Score=33.01 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALI 36 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i 36 (94)
..-.+|.+..|+++|+++|+.+ ++.++++
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v 299 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLG-IQLAFAL 299 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhcc-chHHHHH
Confidence 4445899999999999999988 8888763
No 25
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=81.98 E-value=1.6 Score=33.14 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.3
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
-+|-+.+|++.|++.|+.+ ++.+++++..+.+++.++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 384 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLAL 384 (399)
T ss_pred HHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHH
Confidence 3455677899999999887 899888877776665443
No 26
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=80.90 E-value=2.9 Score=31.47 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=31.6
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
.-+|-+.+|++.|++.|..+ ++..+.++....++++++.
T Consensus 356 ~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 356 RDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Confidence 45677888999999999887 8998888887777776554
No 27
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=79.96 E-value=3.1 Score=30.41 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
.+=.++-..+.++.|+++||++ -|..++++.+...++.
T Consensus 42 ~~~~~~~~i~~~~~G~l~dr~g-~r~~l~~~~~~~~~~~ 79 (394)
T TIGR00883 42 AAGFLARPLGAIVFGHFGDRIG-RKKTLVITLLMMGIGT 79 (394)
T ss_pred HHHHHHhhhHHHHhhhhhhhhh-hHHHHHHHHHHHHHHH
Confidence 3344455567789999999998 4666666555554443
No 28
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=78.60 E-value=1.6 Score=31.70 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+..+..+|...+.++.|+++||++
T Consensus 35 ~~~~~~~~~~~~~~~~g~l~dr~g 58 (379)
T TIGR00881 35 LLSSFSIAYGISKFVMGSVSDRSN 58 (379)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhhC
Confidence 455667788888999999999997
No 29
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=77.52 E-value=2.8 Score=33.31 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.8
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
-+|-+.+|++.|++.|..+ ||.+++++..+.+++.++
T Consensus 153 ~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~ 189 (455)
T TIGR00892 153 PVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVC 189 (455)
T ss_pred cHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence 4556678999999999887 999999988776655443
No 30
>PRK10489 enterobactin exporter EntS; Provisional
Probab=77.49 E-value=6.4 Score=30.25 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=24.1
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 40 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~ 40 (94)
..-+|-+.+|.+.|++.|..+ .+.++++...+
T Consensus 356 ~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~ 387 (417)
T PRK10489 356 QNVTGDAIGAALLGGLGAMMT-PVASASASGFG 387 (417)
T ss_pred HHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHH
Confidence 456789999999999999887 56666544433
No 31
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=77.28 E-value=2.4 Score=34.25 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=33.6
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 51 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~ 51 (94)
..-+|-+.+|++.|++.|+.+ ||.+++++...++++.+.|+..
T Consensus 149 ~~niG~~ig~~l~g~l~~~~g-~~~~f~~~~~~~~~~~l~~~~~ 191 (475)
T TIGR00924 149 SINIGSFISPLLAGVIAENYG-YHVGFNLAAVGMVIGLLTFFAG 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHc
Confidence 344788889999999999877 9999999887777766555443
No 32
>PRK12382 putative transporter; Provisional
Probab=76.94 E-value=2.4 Score=32.15 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=22.5
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 37 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~ 37 (94)
.+....++.+.+.++.|+++||++. |..+.++
T Consensus 56 ~~s~~~~~~~i~~~~~G~l~Dr~g~-r~~l~~~ 87 (392)
T PRK12382 56 AVGIQFLATVLTRGYAGRLADQYGA-KRSALQG 87 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhcc-hHHHHHH
Confidence 3445666777788899999999983 5444443
No 33
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=76.78 E-value=0.74 Score=38.54 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=38.7
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 034456 12 GDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGI-FLH 55 (94)
Q Consensus 12 GDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a-~~~ 55 (94)
+=..+||+.|++-|..+++..+++.|-..+++++.+|++.. .+.
T Consensus 436 ~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~~~~~ 480 (509)
T KOG2504|consen 436 GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILRECLK 480 (509)
T ss_pred HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhHHHHH
Confidence 34568999999999998899999999999999999999988 444
No 34
>PRK09528 lacY galactoside permease; Reviewed
Probab=76.67 E-value=3.5 Score=31.81 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=22.9
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETA 34 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al 34 (94)
++.+..++...++++.|+++||++. |..+
T Consensus 51 ~~s~~~l~~~i~~~~~G~l~Dr~g~-r~~~ 79 (420)
T PRK09528 51 IFSANSLFALLFQPLYGLISDKLGL-KKHL 79 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-hHHH
Confidence 4567778888999999999999973 4433
No 35
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=76.22 E-value=3.4 Score=29.92 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=22.4
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 36 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i 36 (94)
+.....+|-+...++.|+++||++. |+.+.+
T Consensus 39 ~~~~~~~~~~i~~~~~G~l~dr~g~-r~~~~~ 69 (365)
T TIGR00900 39 AALAGMLPYVVLSPIAGALADRYDR-KKVMIG 69 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhch-hHHHHH
Confidence 3456677778888999999999973 444433
No 36
>PRK10091 MFS transport protein AraJ; Provisional
Probab=75.88 E-value=2.7 Score=32.14 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=36.3
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL 54 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~ 54 (94)
..-+|-+.+|++.|++-|+..+++..+.++.++.+++..+.+....+
T Consensus 332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (382)
T PRK10091 332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRY 378 (382)
T ss_pred HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34578899999999999976669999998887777777665554443
No 37
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=75.86 E-value=2.2 Score=32.41 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=23.8
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA 39 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~ 39 (94)
++....+|.+.+.++.|+++||++ -|..+.++.+
T Consensus 56 ~~~~~~~~~~i~~~~~G~l~Dr~g-~r~~l~~~~~ 89 (399)
T PRK05122 56 VISLQYLATLLSRPHAGRYADTLG-PKKAVVFGLC 89 (399)
T ss_pred HHHHHHHHHHHhchhhHhHHhccC-CcchHHHHHH
Confidence 345566777888899999999997 3544444433
No 38
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=75.84 E-value=2.2 Score=34.11 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=32.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
....+.+|...+|.+.|.+||+++ -|..++++.++.++++
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~G-Rk~~~~~~~~~~~i~~ 162 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFG-RKPVLLVSLLLFIIFG 162 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcc-cHHHHHHHHHHHHHHH
Confidence 456789999999999999999987 4666666666666665
No 39
>PRK03633 putative MFS family transporter protein; Provisional
Probab=75.37 E-value=5 Score=30.53 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=23.3
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 36 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i 36 (94)
++..+.+|-..++++.|+++|+++. |..+++
T Consensus 46 ~~s~~~l~~~~~~~~~g~l~dr~g~-k~~~~~ 76 (381)
T PRK03633 46 VSSSYFTGNLVGTLLAGYVIKRIGF-NRSYYL 76 (381)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHH
Confidence 4567778888899999999999973 433333
No 40
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=75.10 E-value=3.9 Score=30.26 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=23.9
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 41 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l 41 (94)
+.+-.+|.+.+.++.|+++||++ -|..++++.+..
T Consensus 53 ~~~~~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~ 87 (405)
T TIGR00891 53 ISAALISRWFGALMFGLWGDRYG-RRLPMVTSIVLF 87 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence 34456777888899999999997 355554444333
No 41
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=74.04 E-value=2.8 Score=29.94 Aligned_cols=39 Identities=28% Similarity=0.282 Sum_probs=27.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
......++...+.++.|.++|+++ -|+.+.++.+...++
T Consensus 39 ~~~~~~~~~~~~~~~~g~~~d~~g-~r~~~~~~~~~~~~~ 77 (352)
T cd06174 39 IVSAFSLGYALGSLLAGYLSDRFG-RRRVLLLGLLLFALG 77 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhC-CchhhHHHHHHHHHH
Confidence 456677888899999999999997 344444444443333
No 42
>PRK03545 putative arabinose transporter; Provisional
Probab=73.92 E-value=4.8 Score=30.64 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=31.2
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
-+|=..+|.+.|++.|+.+ ++..++++..+.+++.+++
T Consensus 339 ~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 339 NIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHH
Confidence 3456668999999999998 9999998888887777764
No 43
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=73.33 E-value=3 Score=33.50 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
...+|-+.+|++.|++.|+.+ ||+.+++...+.+++
T Consensus 139 ~~~~g~~~gp~lgg~l~~~~g-wr~~f~i~~~~~~~~ 174 (495)
T PRK14995 139 VGSGGAAFGPLVGGILLEHFY-WGSVFLINVPIVLVV 174 (495)
T ss_pred HHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHH
Confidence 455677889999999999887 999998875554443
No 44
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=72.92 E-value=1.9 Score=33.72 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=31.9
Q ss_pred HhcCCCCchhHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRV--NNWRETALILTAILFPAAAIWF 49 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i--~~lr~al~i~~~~l~la~~~~~ 49 (94)
..+|-..+|+++|++.|.- +.|+.+++++....+++++++.
T Consensus 405 ~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 405 GFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 3468888999999988753 5589999988888888876654
No 45
>TIGR00898 2A0119 cation transport protein.
Probab=72.70 E-value=4.1 Score=32.11 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=27.6
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
...+..+|-..+.++.|.++|++++ |..+.++.++..++
T Consensus 132 ~~s~~~~g~~~g~~~~g~l~Dr~Gr-r~~~~~~~~~~~i~ 170 (505)
T TIGR00898 132 TQSCFFVGVLLGSFVFGYLSDRFGR-KKVLLLSTLVTAVS 170 (505)
T ss_pred HHHHHHHHHHHHHHhHHHhhhhccc-hHHHHHHHHHHHHH
Confidence 3456778888999999999999983 55555554444433
No 46
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=72.38 E-value=3.7 Score=31.11 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=22.3
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 36 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i 36 (94)
.+....+|-..+.++.|+++|+++ -|..+.+
T Consensus 43 ~~~~~~~~~~~~~~~~G~l~Dr~g-~r~~l~~ 73 (392)
T PRK10473 43 AFSVYLAGMAAAMLFAGKIADRSG-RKPVAIP 73 (392)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHhC-ChHHHHH
Confidence 345566788888999999999997 3444333
No 47
>PRK15011 sugar efflux transporter B; Provisional
Probab=72.19 E-value=4.1 Score=31.30 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=27.0
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
-+|=+.+|++.|++.|+++ ||..+++.....++.+
T Consensus 153 ~lg~~~g~~i~~~l~~~~g-w~~~f~~~~~~~~~~~ 187 (393)
T PRK15011 153 SLAWVIGPPLAYALAMGFS-FTVMYLSAAVAFIVCG 187 (393)
T ss_pred HHHHHHhhHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence 3677888999999999887 9998877765554443
No 48
>TIGR00895 2A0115 benzoate transport.
Probab=71.90 E-value=5.8 Score=29.12 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=22.5
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 38 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~ 38 (94)
.....+|...+.++.|+++|+++ -|..+.++.
T Consensus 58 ~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~ 89 (398)
T TIGR00895 58 FSAGLIGMAFGALFFGPLADRIG-RKRVLLWSI 89 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh-hHHHHHHHH
Confidence 34556777788899999999997 344444433
No 49
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=71.69 E-value=4.9 Score=24.68 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=27.2
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
.-+|-..+|.+.|++.|..+ |+..+.++..+.+++.++
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 96 IALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHH
Confidence 34666778889999888766 888877776665555443
No 50
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=71.13 E-value=5.6 Score=29.72 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=27.6
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
+..+..+|-+.+.++.|+++|+++. |..+.+..++..++.+
T Consensus 76 ~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~ 116 (481)
T TIGR00879 76 VVSIFLVGGFIGALFAGWLSDRFGR-KKSLLIIALLFVIGAI 116 (481)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhh-HHHHHHHHHHHHHHHH
Confidence 3455667778889999999999984 6555554444444433
No 51
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=70.50 E-value=6.8 Score=33.28 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHhcCCCCchhHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 034456 7 SIHIFGDVPSSPLV--GVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFS 61 (94)
Q Consensus 7 ~iHllGDapSP~Li--G~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~~~dr~~ 61 (94)
++|=+|.+.-|+++ |++.++.+ ||.+|++...+.++-+++. ++.-+||-+
T Consensus 160 ~shNiGGal~~~~~~la~~~~~~~-w~~~f~~pgiiaiival~~----~~~~rd~Pq 211 (448)
T COG2271 160 TSHNIGGALAPLVALLAFFAFHGG-WRAAFYFPGIIAIIVALIL----LFLLRDRPQ 211 (448)
T ss_pred hhhhcccchHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH----HHHhCCCcc
Confidence 58999999999999 99999886 9999998776655544433 234555533
No 52
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=70.05 E-value=15 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--Hhhccccccccc
Q 034456 30 WRETALILTAILFPAAAIWFIGIF--LHSVDKFSEDNE 65 (94)
Q Consensus 30 lr~al~i~~~~l~la~~~~~~~a~--~~~~dr~~~~~~ 65 (94)
+-.+++||.|+.++...+||.--- |.....+|+-+.
T Consensus 11 ~~F~~lIC~Fl~~~~~F~~F~~Kqilfr~~~~snear~ 48 (54)
T PF06716_consen 11 LAFGFLICLFLFCLVVFIWFVYKQILFRNNPQSNEARF 48 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcchhhc
Confidence 457889999999888888876533 323344444433
No 53
>PRK12307 putative sialic acid transporter; Provisional
Probab=69.41 E-value=5.3 Score=30.48 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=23.1
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 37 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~ 37 (94)
...++.+|-..+.++.|+++|+++ -|..+.++
T Consensus 58 ~~~~~~~~~~l~~~~~g~l~dr~g-~r~~l~~~ 89 (426)
T PRK12307 58 LATAAFIGRPFGGALFGLLADKFG-RKPLMMWS 89 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-ChHHHHHH
Confidence 345677888888999999999997 34444433
No 54
>PF12832 MFS_1_like: MFS_1 like family
Probab=69.30 E-value=4.6 Score=25.55 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=14.9
Q ss_pred CchhHHHHHHHhHHHHHHHH
Q 034456 15 PSSPLVGVLQDRVNNWRETA 34 (94)
Q Consensus 15 pSP~LiG~iSD~i~~lr~al 34 (94)
.+|++.|++.|+.++.+..+
T Consensus 50 ~~~pl~g~laDk~~~~~~~l 69 (77)
T PF12832_consen 50 LAPPLWGFLADKFGKRKVIL 69 (77)
T ss_pred HHHHHHHHHHHHHCccHHHH
Confidence 47899999999997544433
No 55
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=69.28 E-value=6.3 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=20.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
++.+..++++...++.|.++||.+
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~g 82 (408)
T PRK09874 59 VFSITFLFSAIASPFWGGLADRKG 82 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhC
Confidence 455677788888899999999997
No 56
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=69.17 E-value=1.7 Score=31.44 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=29.6
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
.-+|-..+|.+.|++.++.+ ||..++++..+.+++.+
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFG-WRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCH-HCCHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhhhhhccc-cccccccccchhhhhhh
Confidence 34556677899999998878 99999988888887766
No 57
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=68.56 E-value=7.8 Score=28.04 Aligned_cols=38 Identities=5% Similarity=-0.019 Sum_probs=27.7
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
..-+|-..+|.+.|++.++.+ ||..+.+.....+++..
T Consensus 136 ~~~~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~ 173 (365)
T TIGR00900 136 VRSLFYIVGPGIGGLMYATLG-IKWAIWVDAVGFAISAL 173 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 345566778999999999887 99988776655554443
No 58
>PRK12382 putative transporter; Provisional
Probab=68.10 E-value=6.2 Score=29.89 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=31.3
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
.-+|-+.+|++.|++.|+.+ |+.+++++..+.+++.++.
T Consensus 347 ~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 347 QDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHH
Confidence 44577888999999999887 9999988887777766554
No 59
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=67.67 E-value=4.4 Score=30.92 Aligned_cols=33 Identities=27% Similarity=0.131 Sum_probs=25.8
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 43 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~l 43 (94)
-+|-+.+|++.|++.|+++ ||..+++.....++
T Consensus 138 ~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~~ 170 (382)
T PRK11128 138 SIAFVIGSALTGKLVSWFG-EQAILWILTAGVAS 170 (382)
T ss_pred HHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHH
Confidence 3688889999999999988 99888766544433
No 60
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=67.48 E-value=4.8 Score=29.71 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.9
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
+|-+.+|++.|++.|+.+ ++..+.++....+++.+++
T Consensus 334 ~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 334 VGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Confidence 677888999999999887 8888877776666666554
No 61
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=67.32 E-value=4.8 Score=29.75 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=26.1
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 43 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~l 43 (94)
+..++.+|...+.++.|.++|+++. |..+.++.+...+
T Consensus 45 ~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~~~~~~ 82 (385)
T TIGR00710 45 TLTLYLLGFAAGQLLWGPLSDRYGR-RPVLLLGLFIFAL 82 (385)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCC-hHHHHHHHHHHHH
Confidence 4556777888888999999999973 5555444443333
No 62
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=67.10 E-value=12 Score=31.06 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=25.4
Q ss_pred CCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 14 VPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 14 apSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
+.+.|+..+++|.++ ||.+|++...+-+++.+
T Consensus 151 v~GvPLGt~ig~~~G-WR~~F~~ia~l~ll~~~ 182 (394)
T COG2814 151 VLGVPLGTFLGQLFG-WRATFLAIAVLALLALL 182 (394)
T ss_pred HHhccHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 456899999999999 99999987766655443
No 63
>PRK11663 regulatory protein UhpC; Provisional
Probab=66.85 E-value=6 Score=30.96 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
.+-+|-+.+|++.|++.+..+ ||..+++...+.++.+
T Consensus 155 ~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 155 AHNVGGALIPLVVGAIALHYG-WRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHH
Confidence 456788889999999999887 9999987765544443
No 64
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=65.93 E-value=12 Score=29.60 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.4
Q ss_pred HhcCCCCchhHHHHHHHhH-----HHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRV-----NNWRETALI 36 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i-----~~lr~al~i 36 (94)
=++|.+..|++.|+++|+. ++.+.++++
T Consensus 364 ~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~ 396 (410)
T TIGR00885 364 AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL 396 (410)
T ss_pred HHhccchHHHHHHHHHHHhcccccCccchHHHH
Confidence 3499999999999999954 235566654
No 65
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=65.84 E-value=7.2 Score=31.55 Aligned_cols=38 Identities=11% Similarity=-0.095 Sum_probs=24.2
Q ss_pred HhHHHhcCCCCchhHHHHHHHh-HHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAILFP 43 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~-i~~lr~al~i~~~~l~l 43 (94)
++..-.++-..+|.+.|+++|+ ++ -|..++++.++..+
T Consensus 53 ~~~~~~~~~~~~~~~~G~laDr~~G-~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 53 IFGAYSALVYLLTSVGWWFGDRVWG-TKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhcc-hHHHHHHHHHHHHH
Confidence 3444455667889999999999 66 35544444444333
No 66
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=65.73 E-value=5.4 Score=29.15 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=24.9
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 38 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~ 38 (94)
..+...+|-+.+|++.|++.|+.+.|+...+.+.
T Consensus 354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 3456777888999999999998876665544443
No 67
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=65.56 E-value=8 Score=28.54 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=28.1
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
-+|=+.+|++.|++.|..+ ||..+++.....++.++
T Consensus 135 ~~g~~ig~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~ 170 (375)
T TIGR00899 135 SLAWVIGPPLAFWLALGFG-FTVMFLTAALAFVLCGV 170 (375)
T ss_pred hHHHHHhhhHHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence 4677889999999998877 99998887665555443
No 68
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=65.18 E-value=8 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=18.7
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~ 29 (94)
+.+-.++...+.++.|+++||+++
T Consensus 44 ~~~~~l~~~i~~~~~G~l~Dr~gr 67 (396)
T TIGR00882 44 FSCISLFSILFQPLFGLISDKLGL 67 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445566677788999999999973
No 69
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=65.18 E-value=9.1 Score=31.02 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=36.8
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 51 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~ 51 (94)
+..+..+|-+.+..+.|.++|+++ .|.+++++.+...++.++...+
T Consensus 94 ~~s~~~lga~~g~l~~g~l~d~~G-Rk~~l~~~~~~~~iG~ii~~~a 139 (513)
T KOG0254|consen 94 LTSILNLGALVGSLLAGRLGDRIG-RKKTLLLAVVLFLIGAIIIALA 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888899999999999 5788888888888887766554
No 70
>TIGR00893 2A0114 d-galactonate transporter.
Probab=65.05 E-value=3.6 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=19.6
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+..+..+|...+.++.|+++|+.+
T Consensus 34 ~~~~~~~~~~~~~~~~g~l~d~~g 57 (399)
T TIGR00893 34 VFSAFSWGYVVGQFPGGWLLDRFG 57 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcC
Confidence 455667778888899999999996
No 71
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=64.61 E-value=8.1 Score=30.89 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=22.9
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 41 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l 41 (94)
+.+-.+|=+.+.++.|+++|+++ -|..+.+..++.
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~G-rr~~l~~~~~l~ 97 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYG-RQKILAITIVIM 97 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Confidence 34445666778899999999997 344444444333
No 72
>PRK03893 putative sialic acid transporter; Provisional
Probab=63.81 E-value=9.1 Score=29.91 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=23.2
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 38 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~ 38 (94)
.+....+|-..+.++.|+++|+++. |..++++.
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~ 92 (496)
T PRK03893 60 LISAAFISRWFGGLLLGAMGDRYGR-RLAMVISI 92 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHH
Confidence 3445667778888999999999973 44444443
No 73
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=62.92 E-value=3.2 Score=35.20 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=39.7
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIF 53 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~ 53 (94)
+...++|++..-+.+|++.|..+ |-..+.+.....+++.++++....
T Consensus 389 lf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 389 LFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999966 999999888888888887766554
No 74
>PRK09952 shikimate transporter; Provisional
Probab=62.86 E-value=10 Score=29.80 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
+=.+|...+..+.|+++|++++ |..+.++.++..++
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~ 107 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGR-KRMLMLTVWMMGIA 107 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc-HHHHHHHHHHHHHH
Confidence 3446677888899999999983 55555544444433
No 75
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=61.83 E-value=8.7 Score=33.89 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+..+-.+|-+.+.++.|+++|+++
T Consensus 207 l~s~~~lG~iiG~li~G~LsDR~G 230 (742)
T TIGR01299 207 LGLIVYLGMMVGAFFWGGLADKLG 230 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345567888889999999999997
No 76
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=61.70 E-value=16 Score=29.41 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.2
Q ss_pred CCchhHHHHHHHhHHHHH
Q 034456 14 VPSSPLVGVLQDRVNNWR 31 (94)
Q Consensus 14 apSP~LiG~iSD~i~~lr 31 (94)
..+|++.|.++||..+.+
T Consensus 51 i~~~~~~g~~aDr~~~~~ 68 (400)
T PF03825_consen 51 IVSPPFWGAIADRFGSAK 68 (400)
T ss_pred HHHHHHHHHHHhHhhhHH
Confidence 457999999999985433
No 77
>PRK10091 MFS transport protein AraJ; Provisional
Probab=61.41 E-value=8.3 Score=29.43 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=27.0
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
-.+|...+|++.|++.+..+ ||.+++++..+.++..
T Consensus 136 ~~~g~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~ 171 (382)
T PRK10091 136 MTVANLLGIPLGTYLSQEFS-WRYTFLLIAVFNIAVL 171 (382)
T ss_pred HHHHHHHhccHHHHHhhhcc-HHHHHHHHHHHHHHHH
Confidence 34667778999999999877 9999888766544433
No 78
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=61.34 E-value=9.8 Score=31.90 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=21.4
Q ss_pred CCchhHHHHHHHhHHHHHHHHHHHHHH
Q 034456 14 VPSSPLVGVLQDRVNNWRETALILTAI 40 (94)
Q Consensus 14 apSP~LiG~iSD~i~~lr~al~i~~~~ 40 (94)
+.+|+++|++=|..++|+..+.....+
T Consensus 347 a~GP~l~G~lhDa~gsw~~~~~~l~~~ 373 (395)
T COG2807 347 AFGPWLFGFLHDATGSWSAPLVLLALA 373 (395)
T ss_pred hhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence 568999999999999998776554433
No 79
>PRK03545 putative arabinose transporter; Provisional
Probab=61.32 E-value=8.7 Score=29.25 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.1
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
.+|-+.+|++.|.+.++.+ ||..+.+...+.++..
T Consensus 143 ~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~~ 177 (390)
T PRK03545 143 ALAMVLGLPLGRVIGQYLG-WRTTFLAIGGGALITL 177 (390)
T ss_pred HHHHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHHH
Confidence 3566778899999888877 9999888766555443
No 80
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=60.53 E-value=24 Score=29.69 Aligned_cols=36 Identities=33% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 13 DVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF 49 (94)
Q Consensus 13 DapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~ 49 (94)
=+.+..+.|.+.|+++ .+.++.++.+.+++++++..
T Consensus 356 ~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 356 MPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999998 88888887777776666544
No 81
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=59.43 E-value=17 Score=26.37 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=19.1
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALIL 37 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~ 37 (94)
--++...+..+.|+++||+++ |..+.++
T Consensus 249 ~~~~~~~~~~~~g~l~dr~g~-~~~~~~~ 276 (377)
T TIGR00890 249 SSIFNGGGRPFLGALSDKIGR-QKTMSIV 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hhhhhHH
Confidence 344566778899999999973 4444333
No 82
>PRK10504 putative transporter; Provisional
Probab=58.95 E-value=12 Score=29.17 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=27.7
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
-+|=+.+|++.|++.|+.+ ||+.++++....+++.+
T Consensus 144 ~~g~~~g~~~~g~l~~~~g-w~~~f~~~~~~~~l~~~ 179 (471)
T PRK10504 144 QVGPLLGPALGGLLVEYAS-WHWIFLINIPVGIIGAI 179 (471)
T ss_pred HHHHHhhhHHHHHHHhhcc-HHHHHHHHHHHHHHHHH
Confidence 4577789999999999887 99999887655554443
No 83
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=58.62 E-value=9.4 Score=28.94 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.4
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~ 29 (94)
++.+..+|-..+.++.|.++||++.
T Consensus 48 ~~~~~~~~~~~~~~~~G~l~Dr~gr 72 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPLSDRVGR 72 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCC
Confidence 4566777888889999999999973
No 84
>PRK03633 putative MFS family transporter protein; Provisional
Probab=58.31 E-value=10 Score=28.86 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=26.6
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
.+-+|=+.+|++.|++.|+.+ ++..++++..+.+++
T Consensus 329 ~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 329 SYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence 466788889999999999877 777776655544433
No 85
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=57.80 E-value=12 Score=22.84 Aligned_cols=17 Identities=47% Similarity=0.782 Sum_probs=12.9
Q ss_pred CCCCchhHHHHHHHhHH
Q 034456 12 GDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 12 GDapSP~LiG~iSD~i~ 28 (94)
|-..+.++.|++.|+++
T Consensus 10 ~~~~~~~~~g~~~d~~g 26 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFG 26 (141)
T ss_pred HHHHHHhhHHHHHhhcc
Confidence 34456788899999986
No 86
>PRK03699 putative transporter; Provisional
Probab=57.77 E-value=15 Score=28.06 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=22.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 36 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i 36 (94)
++....+|=..+.++.|+++|+++ -|..+.+
T Consensus 47 ~~s~~~~~~~i~~~~~g~l~dr~g-~r~~~~~ 77 (394)
T PRK03699 47 TFTFLNAGILISIFLNAWLMEIIP-LKRQLIF 77 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 345566777778899999999997 3444333
No 87
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=57.74 E-value=13 Score=27.53 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
...+|-..+|.+.|++.++.+ ||..+++...+.++..++
T Consensus 137 ~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 175 (385)
T TIGR00710 137 VLALAPAVAPLLGGYILVWLS-WHAIFAFLSLAGILLSAL 175 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHH
Confidence 345666778899999888877 998888776655554443
No 88
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=57.54 E-value=6.7 Score=30.32 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
...+|-+.+|.+.|++.|+.+ ||+.+++...+.+++.
T Consensus 134 ~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~ 170 (485)
T TIGR00711 134 TVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVV 170 (485)
T ss_pred HHHHHhhhhhccHhHhccCcC-ceehhhhhhHHHHHHH
Confidence 456778889999999999887 9998887665554444
No 89
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=57.41 E-value=12 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.7
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+..-.+|-..+.++.|.++|+++
T Consensus 54 ~~~~~~~~~~~~~~~G~l~dr~g 76 (406)
T PRK15402 54 MTAYLAGGMFLQWLLGPLSDRIG 76 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777888899999999997
No 90
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=57.11 E-value=17 Score=25.85 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=26.6
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
--+|-..+|.+.|++.|+.+ ||..+.+.....+++.+
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLAL 168 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 34567778999999998876 88887766655555443
No 91
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=56.85 E-value=3.6 Score=34.69 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=0.0
Q ss_pred ChhhHhHHHhcCCCCchhHHHHHHHhH
Q 034456 1 MAISTVSIHIFGDVPSSPLVGVLQDRV 27 (94)
Q Consensus 1 mA~~~~~iHllGDapSP~LiG~iSD~i 27 (94)
+++|.++..+||=.|+|.+.|++-|+-
T Consensus 489 lGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 489 LGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------
T ss_pred hhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 467899999999999999999999965
No 92
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=56.84 E-value=18 Score=29.65 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=17.7
Q ss_pred chhHHHHHHHh-HHHHHHHHHHHHHHHHHH
Q 034456 16 SSPLVGVLQDR-VNNWRETALILTAILFPA 44 (94)
Q Consensus 16 SP~LiG~iSD~-i~~lr~al~i~~~~l~la 44 (94)
.|++.|+++|+ ++ -|..+++...+..++
T Consensus 66 ~~~~~G~laDr~~G-~r~~~~~g~~~~~~g 94 (489)
T PRK10207 66 LISIGGYVGDHLLG-TKRTIVLGAIVLAIG 94 (489)
T ss_pred HHhhHHHhhhhccc-hHHHHHHHHHHHHHH
Confidence 46789999999 77 355554444444443
No 93
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=56.81 E-value=12 Score=29.01 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=22.8
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 40 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~ 40 (94)
+....++-+.+.++.|.++||++ .|..+.++.++
T Consensus 61 ~~~~~~~~~~~~~~~g~l~Dr~g-rr~~~~~~~~~ 94 (394)
T PRK10213 61 VTVTAFVAMFASLFITQTIQATD-RRYVVILFAVL 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-cHHHHHHHHHH
Confidence 34566777778899999999997 34444333333
No 94
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=56.78 E-value=14 Score=26.63 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=23.0
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
....++-..+.++.|.++||++ -|..+.++.+...++
T Consensus 39 ~~~~~~~~~~~~~~g~l~dr~g-~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 39 SAFFLGSALFSPFAGYLSDRFG-RRRVLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CeeeEeehhhhhhhH
Confidence 3445555667889999999997 454554444444444
No 95
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=56.01 E-value=11 Score=29.21 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=22.7
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 40 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~ 40 (94)
.....+|-+.+.++.|+++|+++ -|..+.++.+.
T Consensus 43 ~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~ 76 (485)
T TIGR00711 43 ITSYMLANAISIPLTGWLAKRFG-TRRLFLISTFA 76 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhC-cHHHHHHHHHH
Confidence 34556666777899999999997 35444444333
No 96
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=55.82 E-value=18 Score=30.18 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=10.8
Q ss_pred hhHHHHHHHhHHH
Q 034456 17 SPLVGVLQDRVNN 29 (94)
Q Consensus 17 P~LiG~iSD~i~~ 29 (94)
-|+.|+++||++.
T Consensus 303 rplgG~LADRiG~ 315 (462)
T PRK15034 303 RSVGGAISDKFGG 315 (462)
T ss_pred HHhhHHHHHhcCc
Confidence 3788999999974
No 97
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=55.53 E-value=8.9 Score=26.33 Aligned_cols=10 Identities=0% Similarity=-0.177 Sum_probs=3.7
Q ss_pred HHHhhccccc
Q 034456 52 IFLHSVDKFS 61 (94)
Q Consensus 52 a~~~~~dr~~ 61 (94)
+++.++.|.+
T Consensus 20 ~~~~rRR~r~ 29 (130)
T PF12273_consen 20 YCHNRRRRRR 29 (130)
T ss_pred HHHHHHHhhc
Confidence 3333333333
No 98
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=55.48 E-value=13 Score=28.51 Aligned_cols=32 Identities=28% Similarity=0.123 Sum_probs=24.9
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 40 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~ 40 (94)
..-+|=+.+|++.|++.|+.+ ||..+.++...
T Consensus 136 ~~slG~~~g~~l~g~l~~~~g-~~~~f~~~~~~ 167 (382)
T TIGR00902 136 IGSAAFIIGSALFGGLIGMFD-EQNILAILTAG 167 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHH
Confidence 344677788999999999988 99987766543
No 99
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=55.01 E-value=24 Score=27.61 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.3
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
..-+|-..+|+++|.+.+...+||.+++++....++.+++
T Consensus 162 ~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 162 AHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3446777788888876554445999998877766665443
No 100
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=54.25 E-value=15 Score=28.74 Aligned_cols=40 Identities=5% Similarity=-0.095 Sum_probs=29.3
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
...-+|-+.+|.+.+++.++.+ ||..++++..+.++..++
T Consensus 121 ~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 121 FAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHH
Confidence 4456778888889999988777 999988766655554443
No 101
>PRK11043 putative transporter; Provisional
Probab=53.76 E-value=22 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=25.4
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
+|-+.+|++.|++.|+.+ ||..++++....++..+
T Consensus 141 ~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~ 175 (401)
T PRK11043 141 LSPALAPLLGAWLLNHFG-WQAIFATLFAITLLLIL 175 (401)
T ss_pred HHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHH
Confidence 344567889999998877 99988877665555443
No 102
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=52.59 E-value=16 Score=27.27 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=27.0
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
.+|-..+|.+.|++.|..+ ||..+++...+.+++.++
T Consensus 125 ~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 125 TIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence 4566778999999999877 998887766655554433
No 103
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=52.45 E-value=13 Score=28.22 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=17.7
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+..-.+|-..+.++.|+++|+++
T Consensus 56 ~~~~~~~~~~~~~~~g~l~dr~g 78 (406)
T PRK11551 56 FSAGILGLLPGALLGGRLADRIG 78 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445666778899999999996
No 104
>PRK11010 ampG muropeptide transporter; Validated
Probab=52.26 E-value=17 Score=29.49 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=29.6
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
-+|-...|++.|++.|..+ |+..+.+...+.+++.+++
T Consensus 362 ~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 362 AVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred HHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999887 8888888777777765544
No 105
>PRK09952 shikimate transporter; Provisional
Probab=52.02 E-value=16 Score=28.78 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=28.7
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN-NWRETALILTAILFPAAAI 47 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~-~lr~al~i~~~~l~la~~~ 47 (94)
.+...+|-+.+|+++|++.|.-+ +|+..+.++....+++.+.
T Consensus 386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34566788889999999988653 4776666555555555444
No 106
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=51.92 E-value=17 Score=28.13 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=26.7
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
+..+..+|=+.+.++.|+++|+++ -|..+++..++..++
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~G-rr~~~~~~~~l~~i~ 98 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFG-RRDSLKIAAVLFFIS 98 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence 455666777788999999999998 355555544444333
No 107
>PRK15011 sugar efflux transporter B; Provisional
Probab=51.51 E-value=15 Score=28.20 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=27.3
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
+|=+.+|.+.|++.|+.+ |+..+.++....+++...
T Consensus 351 lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 351 VGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence 567788999999999887 888887766666554433
No 108
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=51.50 E-value=15 Score=32.42 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=19.3
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~ 28 (94)
..+-.++..++..+.|+++|+++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~G 623 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIG 623 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555788999999999999997
No 109
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=51.46 E-value=20 Score=27.89 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.1
Q ss_pred HHhcCCCCchhHHHHHHHhHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~ 28 (94)
...++.....++.|.++|+++
T Consensus 54 ~~~l~~~~~~~~~G~l~dr~g 74 (400)
T PRK11646 54 LRQFIQQGLGIFGGAIADRFG 74 (400)
T ss_pred HHHHHHHHHHhhhhHHHHHhC
Confidence 345556666788999999997
No 110
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=51.15 E-value=14 Score=31.14 Aligned_cols=17 Identities=47% Similarity=0.634 Sum_probs=13.0
Q ss_pred hHHHHHHHhHHHHHHHH
Q 034456 18 PLVGVLQDRVNNWRETA 34 (94)
Q Consensus 18 ~LiG~iSD~i~~lr~al 34 (94)
++.|++|||++.-|..+
T Consensus 272 p~GG~LsDR~Gg~rv~~ 288 (417)
T COG2223 272 PLGGWLSDRIGGRRVTL 288 (417)
T ss_pred hccchhhhhccchhHHH
Confidence 67899999998656433
No 111
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=50.89 E-value=23 Score=28.37 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=19.5
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~ 29 (94)
......+|...+.++.|+++|++++
T Consensus 291 ~~~~~~~~~~~~~~~~g~l~dr~gr 315 (490)
T PRK10642 291 IIIAIMIGMLFVQPVMGLLSDRFGR 315 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667778888899999999973
No 112
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=50.28 E-value=13 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 28 NNWRETALILTAILFPAAAIWFIGIF 53 (94)
Q Consensus 28 ~~lr~al~i~~~~l~la~~~~~~~a~ 53 (94)
.+||+++++--|+.++++.||-+...
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi~~~ 28 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPIYFR 28 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhcc
Confidence 35999999999999999999877654
No 113
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=49.31 E-value=21 Score=31.20 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=15.3
Q ss_pred HHhcCCCCchhHHHHHHHhHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~ 28 (94)
+-.+|=....++.|+++|+++
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~g 75 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFS 75 (1146)
T ss_pred HHHHHHHHHhhhHhhhccccc
Confidence 344455566778899999997
No 114
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=49.25 E-value=18 Score=27.48 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=26.1
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
-+|-..+|.+.|++.|+.+ ++..+.++..+.+++.
T Consensus 350 ~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 350 DLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHH
Confidence 5677788999999999887 7777777666555543
No 115
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=49.16 E-value=43 Score=28.28 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456 30 WRETALILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 30 lr~al~i~~~~l~la~~~~~~~a~~~ 55 (94)
|+.+.+++|.+++++++.||...++.
T Consensus 348 W~~~AlitPiv~lit~~~FF~~~~f~ 373 (491)
T PF03219_consen 348 WRTAALITPIVILITGLLFFGFILFN 373 (491)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888877663
No 116
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=48.82 E-value=19 Score=27.34 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=24.8
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF 42 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~ 42 (94)
...+|-..+|++.|++.++.+ ||..+.+...+.+
T Consensus 140 ~~~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~ 173 (394)
T PRK11652 140 GILVSPLLAPLIGGLLTTLFG-WRACYLFLLLLGA 173 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 345666778899999988777 9988877554433
No 117
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=48.76 E-value=8.8 Score=29.62 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=29.3
Q ss_pred CCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 14 VPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGI 52 (94)
Q Consensus 14 apSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a 52 (94)
..++.+.++++|+.+ |..++.++.+.++++.+.|+.+.
T Consensus 86 ~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 86 LFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred Hhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHhCC
Confidence 345666777787777 99999999999999988876553
No 118
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=48.64 E-value=23 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=19.6
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAIL 41 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l 41 (94)
+|=..+.++.|+++||++ -|..+.++.++.
T Consensus 74 ~~~~ig~~~~G~l~Dr~G-rr~~l~~~~~~~ 103 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHG-RKKSMLISVCMM 103 (432)
T ss_pred HHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 344466778999999998 355555444444
No 119
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=48.59 E-value=6.6 Score=29.97 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.5
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
++.+--+.|+.+-|++|.++||.+
T Consensus 40 i~~~~~i~~~i~~p~~G~lsDr~~ 63 (437)
T TIGR00792 40 LFLVARILDAITDPIMGNIVDRTR 63 (437)
T ss_pred HHHHHHHHHHhccchheEeeecCC
Confidence 445556789999999999999863
No 120
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=48.50 E-value=32 Score=26.01 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=18.6
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~ 29 (94)
....-++..++.++.|+++|+++.
T Consensus 261 ~~~~~~~~~~~~~~~g~l~dr~g~ 284 (406)
T PRK11551 261 QIAFNIGGALGSLLIGALMDRLRP 284 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344556778888999999999973
No 121
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=48.36 E-value=7.9 Score=28.94 Aligned_cols=39 Identities=3% Similarity=0.017 Sum_probs=27.9
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
+.-+|.+.+|++.|++-|+.+ |+..++++..+.++++++
T Consensus 427 ~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~ 465 (481)
T TIGR00879 427 ANWLANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIF 465 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHH
Confidence 445688888999999988876 787777666555555443
No 122
>PRK10489 enterobactin exporter EntS; Provisional
Probab=47.96 E-value=27 Score=26.83 Aligned_cols=36 Identities=22% Similarity=0.052 Sum_probs=25.8
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
.--+|-..+|.+.|++.|..+ |++.+++.....+++
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~~~~~~~~ 189 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGG-VAWNYGLAAAGTFIT 189 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344677788999999999876 888877655544443
No 123
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=47.02 E-value=23 Score=28.45 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=18.9
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~ 28 (94)
.....+|-..+.++.|+++||++
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G 99 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYG 99 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566777888899999999996
No 124
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=46.52 E-value=23 Score=28.32 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=21.7
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 36 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i 36 (94)
+...-.+|-+.+.++.|+++|+++. |..+.+
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Gr-r~~~~~ 91 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGR-KRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHH
Confidence 3444567777888999999999973 444433
No 125
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=46.51 E-value=18 Score=28.29 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=22.8
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 37 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~ 37 (94)
++....+|=..+.++.|+++|+++ -|+.+.++
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g-~r~~l~~~ 112 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYV-FKWSIGIG 112 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhC-cchhhHHH
Confidence 455666777788899999999997 35444433
No 126
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=45.93 E-value=21 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=17.3
Q ss_pred cCCCCchhHHHHHHHhH-HHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRV-NNWRETALIL 37 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i-~~lr~al~i~ 37 (94)
.+=..+|.+.|+++||+ ++ |..+++.
T Consensus 56 ~~~~l~~ligG~LaDRilGr-rr~iliG 82 (493)
T PRK15462 56 SLVYVTPILGGFLADKVLGN-RMAVMLG 82 (493)
T ss_pred HHHHHHHHHHHHHHHHccCc-HHHHHHH
Confidence 33455788999999998 63 4444433
No 127
>PRK10429 melibiose:sodium symporter; Provisional
Probab=45.83 E-value=6.1 Score=31.54 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHhcCCCCchhHHHHHHHhH
Q 034456 8 IHIFGDVPSSPLVGVLQDRV 27 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i 27 (94)
+=-+=|+.+.|++|.+||+.
T Consensus 50 i~ri~dai~dp~~G~lsD~t 69 (473)
T PRK10429 50 VARIWDAINDPIMGWIVNNT 69 (473)
T ss_pred HHHHHHHHhhchheeehhcC
Confidence 33445899999999999965
No 128
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=45.58 E-value=22 Score=27.47 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=22.7
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 40 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~ 40 (94)
.+....+|=+.+.++.|+++|+.+ -|..+.++..+
T Consensus 49 ~~s~~~~~~~l~~~~~g~l~dr~G-~r~~l~~~~~l 83 (393)
T PRK09705 49 LTALPVVTMGGLALAGSWLHQHVS-ERRSVAISLLL 83 (393)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhC-chHHHHHHHHH
Confidence 445566666777889999999996 24444333333
No 129
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=45.58 E-value=53 Score=24.28 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034456 30 WRETALILTAILFPAAAIWFIGIFLHSV 57 (94)
Q Consensus 30 lr~al~i~~~~l~la~~~~~~~a~~~~~ 57 (94)
++.++++...+..+..++|.+=++-.++
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7788888777777777776665554443
No 130
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=45.28 E-value=25 Score=26.64 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=26.1
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
.+|...+|.+.|++.+..+ ||..+.++..+.++..+
T Consensus 137 ~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 137 CIIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHHHH
Confidence 4566778888888888776 99888877665554443
No 131
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=45.19 E-value=19 Score=28.17 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=17.6
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
++.+-.+|-+.+.++.|+++|+++
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~G 79 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIG 79 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcC
Confidence 344455666667778999999996
No 132
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=44.99 E-value=24 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=28.1
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
.+.-+|-+..|.+.|++.|.++ ++.++++...+.+++
T Consensus 351 ~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 351 FAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHH
Confidence 3556788888999999999887 888887766555443
No 133
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=44.48 E-value=42 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=24.4
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
+|=+.+|.+.|++.++.+ ||..+++.....+++.
T Consensus 151 ~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~ 184 (413)
T PRK15403 151 VAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAF 184 (413)
T ss_pred HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 455667888888888766 9999887766555543
No 134
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=44.25 E-value=43 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=29.9
Q ss_pred hHHHhcCCCCchhHHHHHHHh---------------------HHHHHHHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDR---------------------VNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~---------------------i~~lr~al~i~~~~l~la~~~ 47 (94)
.....+|=+.+|.+.|++.+. +++|+..++++..+.++.++.
T Consensus 214 ~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 214 ESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred HHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888889888888753 235888888777766665543
No 135
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=44.12 E-value=29 Score=25.90 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=17.0
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~ 28 (94)
...-.+|...+.++.|+++||++
T Consensus 238 ~~~~~~~~i~~~~~~g~l~dr~~ 260 (355)
T TIGR00896 238 LALMQLAQAASALLIPALARRVK 260 (355)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc
Confidence 33445666777889999999994
No 136
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=43.73 E-value=39 Score=27.03 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=19.0
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~ 29 (94)
.....+|..++..+.|+++||+++
T Consensus 341 ~~~~~~~~i~g~~~~~~l~dr~gR 364 (502)
T TIGR00887 341 LIIALAGTVPGYWVTVFLVDIIGR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345667788888999999999973
No 137
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=43.32 E-value=25 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=19.3
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 41 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l 41 (94)
..++=+..-++.|+++||.+ -|..+.++.++.
T Consensus 47 ~~l~~~l~~~~~G~laDr~g-rr~vl~~~~~~~ 78 (393)
T PRK11195 47 FVLAYIVLAPFVGAFADSFP-KGRVMFIANGIK 78 (393)
T ss_pred HHHHHHHHHhhhhHhhhccC-CchhhHHHHHHH
Confidence 33444455688899999997 344444444433
No 138
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=43.27 E-value=36 Score=27.69 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=34.1
Q ss_pred hcCCCCchhHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034456 10 IFGDVPSSPLVGVLQDRVN----NWRETALILTAILFPAAAIWFIGIFLHSVDK 59 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~----~lr~al~i~~~~l~la~~~~~~~a~~~~~dr 59 (94)
+.|.++.+...|.+++..+ =+++..+..|..++.....|++..++++.|.
T Consensus 191 ~~g~~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~~~~ 244 (471)
T PF00939_consen 191 LTGSAPNLIAAGFLESATGISISFLDWFIYALPPGIIMLVLMWLILYKLFKPDV 244 (471)
T ss_pred ccCCCchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4577777888898887542 2567777777777767777777766665544
No 139
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=43.15 E-value=6.8 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=24.7
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILF 42 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~ 42 (94)
+|-+.+|+++|.+.|+.++|+.++.++....+
T Consensus 380 ~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~~ 411 (412)
T TIGR02332 380 IGSALSPFLIGILKDATGSFNSGLWFVAALLV 411 (412)
T ss_pred hhhhhhhhhcccccccCCCCchhHHHHHHHHh
Confidence 57788899999999988778887776665443
No 140
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=42.93 E-value=30 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=22.4
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 37 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~ 37 (94)
.+....++-+.+-++.|.+.||++ -|+.+.++
T Consensus 53 ~~~~~~~~~~i~~~~~g~l~dr~g-~k~~l~~~ 84 (402)
T TIGR00897 53 AFTLYGIAAAISAWISGVVAEIIG-PLKTMMIG 84 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHH
Confidence 445666777788899999999997 34444333
No 141
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=42.63 E-value=28 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF 42 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~ 42 (94)
...+|=+.+-+..|+++|+++ -|+.+.++.++..
T Consensus 49 ~~~l~~~~~~~~~G~l~D~~G-rk~~l~~~~~~~~ 82 (495)
T PRK14995 49 IYSLVMAGMVLPMGALGDRIG-FKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHH
Confidence 344444445577899999997 3544444444333
No 142
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=42.60 E-value=15 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=18.6
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+.+=.++.+.+.++.|.++||++
T Consensus 69 ~~~~~i~~~~~~~~~G~l~Dr~g 91 (452)
T PRK11273 69 LSGISIAYGFSKFIMGSVSDRSN 91 (452)
T ss_pred HHHHHHHHHHHHhhhhhhhhccC
Confidence 34556777888899999999997
No 143
>PRK15075 citrate-proton symporter; Provisional
Probab=42.17 E-value=52 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=17.3
Q ss_pred CCchhHHHHHHHhHHHHHHHHHHHHHHH
Q 034456 14 VPSSPLVGVLQDRVNNWRETALILTAIL 41 (94)
Q Consensus 14 apSP~LiG~iSD~i~~lr~al~i~~~~l 41 (94)
..+..+.|+++|+++. |..+.+..++.
T Consensus 70 ~ig~~~~G~l~Dr~Gr-r~~l~~~~~~~ 96 (434)
T PRK15075 70 PLGAIVLGAYIDRVGR-RKGLIVTLSIM 96 (434)
T ss_pred hhHHHHHHHHhhhhch-HHHHHHHHHHH
Confidence 3456778999999983 54444444433
No 144
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=41.48 E-value=22 Score=27.59 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.0
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILF 42 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~ 42 (94)
-+|=+.+|++.|++.+.++ ||..+++...+.+
T Consensus 154 ~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~~ 185 (394)
T PRK10213 154 SIALVIAAPLGSFLGELIG-WRNVFNAAAVMGV 185 (394)
T ss_pred HHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHH
Confidence 3566678899999998877 9999887654433
No 145
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=41.42 E-value=19 Score=31.33 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=28.9
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
...+.++-+.+-+++|.+||.++ -|+-+++..++.++|.+
T Consensus 84 ~~~~~l~~av~~~~~G~LSDlfG-Rr~~~i~g~~l~vvG~I 123 (599)
T PF06609_consen 84 STAWTLASAVSFPFVGRLSDLFG-RRYFFIIGSLLGVVGSI 123 (599)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhc-chHHHHHHHHHHHhHHH
Confidence 45577788888899999999998 36666665555555544
No 146
>PRK10054 putative transporter; Provisional
Probab=40.86 E-value=26 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=14.7
Q ss_pred hcCCCCchhHHHHHHHhHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~ 29 (94)
.++.....+..|.++||+++
T Consensus 53 ~~~~~~~~~~~G~l~Dr~g~ 72 (395)
T PRK10054 53 LTIGVVFSLGFGILADKFDK 72 (395)
T ss_pred HHHHHHHHHHHHHHHhhcCc
Confidence 34455566889999999974
No 147
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=40.52 E-value=72 Score=27.68 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034456 29 NWRETALILTAILFPAAAIWFIGIFLHSVD 58 (94)
Q Consensus 29 ~lr~al~i~~~~l~la~~~~~~~a~~~~~d 58 (94)
+|-.+.+++|.+.+++++.||..++|...+
T Consensus 350 GW~~~AlitPiv~litg~lFF~~~~f~~~~ 379 (509)
T COG3202 350 GWFTGALITPLVMLITGVLFFGFAFFNNSI 379 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 388999999999999999999998886433
No 148
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=40.43 E-value=55 Score=24.32 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=13.6
Q ss_pred HhcCCCCchhHHHHHHHhHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~ 28 (94)
..++-..+-++.|++.|+++
T Consensus 239 ~~~~~~~~~~~~g~l~~r~g 258 (377)
T PRK11102 239 NIVFLFVMTIINSRFVRRVG 258 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33444455677889999986
No 149
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=40.36 E-value=74 Score=24.55 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456 22 VLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 22 ~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~ 55 (94)
++||+|+ |.|-+-...++.+=.++|+++.++.
T Consensus 142 iWSDKIR--r~STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 142 IWSDKIR--RASTWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788887 6666667777777777777777665
No 150
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=40.23 E-value=9.6 Score=31.66 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=30.2
Q ss_pred CCchhHHHHHH-Hh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 14 VPSSPLVGVLQ-DR-VNNWRETALILTAILFPAAAIWFIG 51 (94)
Q Consensus 14 apSP~LiG~iS-D~-i~~lr~al~i~~~~l~la~~~~~~~ 51 (94)
..+|.++|.+- |. .++||.-|++...+++++.++|.+-
T Consensus 407 ~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 407 FIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 35788888887 53 4569999999999999999887543
No 151
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=39.84 E-value=30 Score=25.78 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=21.2
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 38 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~ 38 (94)
.....+|=....++.|+++|+++ -|+.+.+..
T Consensus 41 ~s~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~ 72 (355)
T TIGR00896 41 TALPVLCFAVLAPLAPWLARRFG-EERSVAAGL 72 (355)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhC-chHHHHHHH
Confidence 34455566667789999999997 354444433
No 152
>PLN02776 prenyltransferase
Probab=39.52 E-value=23 Score=28.80 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.4
Q ss_pred HHHhcCCCCc--hhHHHHHHH
Q 034456 7 SIHIFGDVPS--SPLVGVLQD 25 (94)
Q Consensus 7 ~iHllGDapS--P~LiG~iSD 25 (94)
..|.+|-+.+ |+++||..=
T Consensus 125 ~~~~lG~~~Ga~ppL~Gw~Av 145 (341)
T PLN02776 125 ANTWVGAVVGAIPPLMGWAAA 145 (341)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 3578898888 999998765
No 153
>PRK10504 putative transporter; Provisional
Probab=39.11 E-value=43 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=16.4
Q ss_pred HHHhcCCCCchhHHHHHHHhHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~ 28 (94)
..-.+|-+.+.++.|+++|+++
T Consensus 52 ~~~~~~~~~~~~~~g~l~d~~g 73 (471)
T PRK10504 52 VSYVLTVAVMLPASGWLADRVG 73 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555667789999999997
No 154
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=38.82 E-value=21 Score=27.19 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=25.0
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
+|-..+|.+.|++.+..+ ||..++++..+.+++.+
T Consensus 148 ~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~~~~ 182 (406)
T PRK15402 148 LAPLLGPLVGAALIHVLP-WRGMFVLFAALAALSFF 182 (406)
T ss_pred HHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHH
Confidence 456678888888888665 99888776666555443
No 155
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=38.58 E-value=43 Score=26.41 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=22.7
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 40 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~ 40 (94)
+.....+|=..+.+..|++.||++ -|..+.+..++
T Consensus 43 l~s~~~~g~~i~~~~~g~l~~r~G-~r~~~~~g~~l 77 (410)
T TIGR00885 43 VQSAFYGGYFIMAIPAAIFMKKLS-YKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHH
Confidence 344556666777888999999997 35444433333
No 156
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=38.39 E-value=39 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETA 34 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al 34 (94)
.+.-+|-...+++.|.++|+.++-|..+
T Consensus 45 a~~~~~~~i~~~~~g~l~dr~g~~r~~~ 72 (418)
T TIGR00889 45 SSTGIAAILMPILVGIIADKWLSAQKVY 72 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 4445556667789999999984334333
No 157
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=38.37 E-value=47 Score=27.75 Aligned_cols=14 Identities=57% Similarity=0.859 Sum_probs=12.1
Q ss_pred CchhHHHHHHHhHH
Q 034456 15 PSSPLVGVLQDRVN 28 (94)
Q Consensus 15 pSP~LiG~iSD~i~ 28 (94)
.+.+++|.+||+++
T Consensus 77 i~s~~iG~lSD~~g 90 (463)
T KOG2816|consen 77 ISSPLIGALSDRYG 90 (463)
T ss_pred HHHhhhHHhhhhhh
Confidence 36689999999997
No 158
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=38.31 E-value=49 Score=20.64 Aligned_cols=20 Identities=15% Similarity=-0.114 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034456 35 LILTAILFPAAAIWFIGIFL 54 (94)
Q Consensus 35 ~i~~~~l~la~~~~~~~a~~ 54 (94)
.-...+++++.+++.+..++
T Consensus 33 ~w~~~wv~lts~~~~~~y~l 52 (66)
T PF11755_consen 33 WWQLAWVVLTSVCMAIVYRL 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33446667777777777766
No 159
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=38.01 E-value=58 Score=26.60 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=10.9
Q ss_pred CchhHHHHHHHh-HH
Q 034456 15 PSSPLVGVLQDR-VN 28 (94)
Q Consensus 15 pSP~LiG~iSD~-i~ 28 (94)
..+++.|+++|+ ++
T Consensus 72 ~~~~~~G~LaDr~~G 86 (500)
T PRK09584 72 GLVAIGGWLGDKVLG 86 (500)
T ss_pred HHHHHHHHHHHhccc
Confidence 345789999999 46
No 160
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=37.88 E-value=30 Score=29.58 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=31.6
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 51 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~ 51 (94)
.++-+.|.|+.|.+||+.+ -|-.+++|....+++-.+|...
T Consensus 78 ~ilQ~~sS~~~G~~SD~yG-Rkpvll~c~~~va~s~ll~~~S 118 (451)
T KOG2615|consen 78 SILQFISSPLWGCLSDRYG-RKPVLLACLIGVALSYLLWALS 118 (451)
T ss_pred HHHHHHhhhhhhhhhhhhC-chHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999998 4777888888777776666544
No 161
>PRK09848 glucuronide transporter; Provisional
Probab=37.76 E-value=16 Score=28.57 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=19.5
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
++.+--+.|+...+++|+++|+.+
T Consensus 49 ~~~~~~~~~~~~~~~~G~l~Dr~~ 72 (448)
T PRK09848 49 MLLLVRVFDAFADVFAGRVVDSVN 72 (448)
T ss_pred HHHHHHHHHHHhhhhheeeeecCC
Confidence 344556789999999999999873
No 162
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=37.60 E-value=40 Score=29.05 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=37.4
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~ 55 (94)
.|-..+|.+.|+++++.+ |..+|.++..-+.++-+.|.++-+..
T Consensus 166 iGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 166 IGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred hHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHccchh
Confidence 466779999999999998 99999999999999988887776543
No 163
>PRK11043 putative transporter; Provisional
Probab=37.40 E-value=28 Score=26.39 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=17.9
Q ss_pred hHHHhcCCCCchhHHHHHHHhHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+.+-.+|=..+.++.|+++||++
T Consensus 47 ~s~~~~~~~~~~~~~g~l~dr~g 69 (401)
T PRK11043 47 LSLFLAGFALGQLLWGPLSDRYG 69 (401)
T ss_pred HHHHHHHHHHHHHhhhhHHhhcC
Confidence 44556666778899999999996
No 164
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=37.38 E-value=49 Score=25.39 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=26.5
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
-+|-...+++.|++.|+++ |+..+.+..+..+++..+
T Consensus 349 ~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 349 SVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence 3455445679999999998 888777777666665443
No 165
>PRK15075 citrate-proton symporter; Provisional
Probab=37.30 E-value=44 Score=26.05 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=15.0
Q ss_pred hcCCCCchhHHHHHHHhHH
Q 034456 10 IFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~ 28 (94)
.+|-..+|+++|++.|+.+
T Consensus 378 ~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHhhhHHHHHHHHHHhcC
Confidence 3444568999999999886
No 166
>PRK09669 putative symporter YagG; Provisional
Probab=36.03 E-value=11 Score=29.60 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.7
Q ss_pred hHhHHHhcCCCCchhHHHHHHHhHH
Q 034456 4 STVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 4 ~~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
.++.+--+-|+.+-|++|+++|+.+
T Consensus 49 ~i~~i~~i~dai~dp~~G~lsD~~~ 73 (444)
T PRK09669 49 TMFLVVRVLDAVTDPLMGALVDRTR 73 (444)
T ss_pred HHHHHHHHHHHcccceeeEeeecCC
Confidence 3556677889999999999999864
No 167
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=34.92 E-value=20 Score=29.69 Aligned_cols=32 Identities=13% Similarity=0.450 Sum_probs=18.7
Q ss_pred chhHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Q 034456 16 SSPLVGVLQDRVNNWRETA-LILTAILFPAAAIW 48 (94)
Q Consensus 16 SP~LiG~iSD~i~~lr~al-~i~~~~l~la~~~~ 48 (94)
..|+.|.++||++ .|+-+ .++...+++.+.+|
T Consensus 59 ~qp~~G~i~Dklg-~kK~Ll~~i~~l~~l~~pff 91 (412)
T PF01306_consen 59 AQPVYGFISDKLG-LKKHLLWFIAILLLLFGPFF 91 (412)
T ss_dssp THHHHHHHHHHCT-TCSHHHHHHHHHHHTCHHHH
T ss_pred HHHhHHHhcchhh-hhHHHHHHHHHHHHHHHHHH
Confidence 3468899999997 45443 33333434444443
No 168
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=34.39 E-value=53 Score=25.24 Aligned_cols=37 Identities=8% Similarity=-0.000 Sum_probs=26.5
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
..-+|-..+|++.|++-|..+ ++..+.++....++++
T Consensus 358 ~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 358 SAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHH
Confidence 345666788999999999887 7777766665555543
No 169
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=34.38 E-value=1.2e+02 Score=25.16 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=26.4
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 034456 16 SSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFS 61 (94)
Q Consensus 16 SP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~~~dr~~ 61 (94)
-+++.|.+-|+++ -+.++++... +...+-+++++..++|+..
T Consensus 365 ~s~~~G~lyd~~G-~~~tylimg~---iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 365 LSPLAGYLYDRIG-FQHTYLIMGL---IVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHS--SSST
T ss_pred HhhhHHhhHhhcC-cHHHHHHHHH---HHHHHHHHheeeecCCCcc
Confidence 3678999999998 6766655443 3444556677776666643
No 170
>PRK12307 putative sialic acid transporter; Provisional
Probab=34.17 E-value=39 Score=25.73 Aligned_cols=28 Identities=7% Similarity=-0.107 Sum_probs=19.5
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILT 38 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~ 38 (94)
-+|-..+|.+.|++.|+++ +...+.++.
T Consensus 367 ~~~~~~gp~~~g~l~~~~g-~~~~~~~~~ 394 (426)
T PRK12307 367 ATSGTFNSMAATWLGITMG-LGAALTFIV 394 (426)
T ss_pred hHHHHHHHHHHHHHHHccc-HHHHHHHHH
Confidence 3567789999999999887 544443333
No 171
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.98 E-value=50 Score=23.46 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=16.9
Q ss_pred hhHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Q 034456 17 SPLVGVLQDRVNN-WRETALILTAILFPAAA 46 (94)
Q Consensus 17 P~LiG~iSD~i~~-lr~al~i~~~~l~la~~ 46 (94)
-..+||+-|++-+ --+.|.+.+++.+.+|+
T Consensus 59 Ga~iG~llD~~agTsPwglIv~lllGf~AG~ 89 (116)
T COG5336 59 GAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89 (116)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3567888888842 23455555554444443
No 172
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=33.09 E-value=46 Score=25.41 Aligned_cols=35 Identities=11% Similarity=-0.073 Sum_probs=24.6
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
..-+|=+.+|.+.|++.|+++ . ..++++..+.+++
T Consensus 337 ~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 337 AMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHH
Confidence 445777788999999999986 3 5555555555444
No 173
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=32.70 E-value=87 Score=22.48 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456 30 WRETALILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 30 lr~al~i~~~~l~la~~~~~~~a~~~ 55 (94)
|.|+++...++.++=+++.+.-....
T Consensus 35 WNysiL~Ls~vvlvi~~~LLgrsi~A 60 (125)
T PF15048_consen 35 WNYSILALSFVVLVISFFLLGRSIQA 60 (125)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHh
Confidence 88999887777666665555444443
No 174
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=32.67 E-value=66 Score=25.09 Aligned_cols=27 Identities=7% Similarity=-0.120 Sum_probs=16.7
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILT 38 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~ 38 (94)
+|=+.+.+..|+++|+++ -|..+.++.
T Consensus 54 ~~~~~~~~~~g~l~dr~G-~r~~~~~~~ 80 (412)
T TIGR02332 54 AAYVICGIPSNIMLAIIG-ARRWIAGIM 80 (412)
T ss_pred HHHHHHHhhHHHHHHHhC-hHHHHHHHH
Confidence 344455677799999997 354444333
No 175
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=32.52 E-value=15 Score=29.67 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred HhhccccccccccccccccCCCCccccccc
Q 034456 54 LHSVDKFSEDNEDKVSRIERSKTTPLLEDE 83 (94)
Q Consensus 54 ~~~~dr~~~~~~~~~~~~~~~~~~~ll~~~ 83 (94)
|.++.|...|.+..+.....+++.||.++.
T Consensus 248 Yr~rrRs~~e~q~~d~~~~~Pe~spLtqde 277 (285)
T PF05337_consen 248 YRRRRRSHREPQTVDSPMEQPEGSPLTQDE 277 (285)
T ss_dssp ------------------------------
T ss_pred ecccccccccccccCCcccCCCCCCCccCC
Confidence 667777777777666655666667776543
No 176
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=32.29 E-value=50 Score=25.64 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=25.0
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
+|-+.+|.+.|++. ..+ ||..++++.++.++++++
T Consensus 146 ~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 146 AGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHHHH
Confidence 45566788899888 455 999888877666665444
No 177
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=31.75 E-value=56 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.3
Q ss_pred HHhcCCCCchhHHHHHHHhHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~ 29 (94)
...+|...+..+.|+++|++++
T Consensus 282 ~~~~~~~~g~~~~g~l~dr~g~ 303 (405)
T TIGR00891 282 FSNIGAIVGGCVFGFLGDWLGR 303 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 3445566777889999999963
No 178
>PRK10054 putative transporter; Provisional
Probab=31.73 E-value=42 Score=25.99 Aligned_cols=33 Identities=12% Similarity=-0.065 Sum_probs=24.1
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
+|-+.+|++.|++.+ .+ |+..+.++....+++.
T Consensus 143 lg~~igp~l~~~l~~-~g-~~~~f~~~~~~~~i~~ 175 (395)
T PRK10054 143 IGWTVGPPLGTLLVM-QS-INLPFWLAAICSAFPL 175 (395)
T ss_pred HHHHHHHHHHHHHHH-hc-cCcHHHHHHHHHHHHH
Confidence 477888999998875 44 8888887766655543
No 179
>PRK10133 L-fucose transporter; Provisional
Probab=31.65 E-value=68 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=23.6
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
..-.+|=..+.++.|.+.||++ -|..+.+...+..++.
T Consensus 68 ~~~~~g~~i~~~~~g~l~dr~G-~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 68 SAFYFGYFIIPIPAGILMKKLS-YKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHH
Confidence 3445566667788999999997 3544444444444333
No 180
>PRK10692 hypothetical protein; Provisional
Probab=31.45 E-value=44 Score=22.87 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 034456 33 TALILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 33 al~i~~~~l~la~~~~~~~a~~~ 55 (94)
-.....+-.++++++|+.|++.-
T Consensus 42 ~~~gal~~IFiGAllWL~GArig 64 (92)
T PRK10692 42 FAHGALLSIFVGALLWLAGARVG 64 (92)
T ss_pred HHhhHHHHHHHHHHHHHhccccc
Confidence 33466778899999999999865
No 181
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=31.32 E-value=49 Score=25.12 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 12 GDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 12 GDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
|=..++.+.|++.++++ ||..+++.....++..+
T Consensus 145 G~~~g~~~~~~l~~~~g-w~~~f~~~a~l~~~~~~ 178 (390)
T TIGR02718 145 GFFGGGAGTLVLFGKFG-QRPAFLLVACVPLASLV 178 (390)
T ss_pred HHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 44445566667888888 99988887766654433
No 182
>TIGR00895 2A0115 benzoate transport.
Probab=31.13 E-value=18 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=24.1
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 43 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~l 43 (94)
..-+|-..+|.+.|++.+..+ ||..++++..+.++
T Consensus 149 ~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~ 183 (398)
T TIGR00895 149 GYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGIAPLL 183 (398)
T ss_pred HHHHHHHHHHHHHHHHhhccc-ceeehhhhhhHHHH
Confidence 344566778888888888776 88887776444333
No 183
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=30.16 E-value=1.4e+02 Score=25.10 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=25.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 21 GVLQDRVNNWRETALILTAILFPAAAIWFIGIFL 54 (94)
Q Consensus 21 G~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~ 54 (94)
+.+-.+.+ |..+.+++|.++++++..|+...+|
T Consensus 324 ~~l~~~~G-w~~~a~i~Pii~lit~~~Ff~~~~f 356 (472)
T TIGR00769 324 GNVIRKYG-WLTAALITPLVMLLTGVAFFSLIFF 356 (472)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555 9999999999999988888865444
No 184
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=29.07 E-value=76 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=18.4
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 16 SSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 16 SP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
+|.+.||++||+=.=|.+..+-..++.+|
T Consensus 77 t~i~GG~laDr~LG~~~tI~lGail~~iG 105 (498)
T COG3104 77 TPIIGGWLADRVLGTRRTIVLGAILMAIG 105 (498)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 68899999999932355554444444433
No 185
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.73 E-value=90 Score=26.36 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=23.6
Q ss_pred cCCCCchhHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRV---NNWRETALILTAILFPAA 45 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i---~~lr~al~i~~~~l~la~ 45 (94)
.|++.+-.+.|++||++ .+.|..+.+..++..+.+
T Consensus 320 ~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 320 VGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG 357 (495)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 46677788999999996 346655555555544444
No 186
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=28.58 E-value=22 Score=28.51 Aligned_cols=38 Identities=5% Similarity=-0.097 Sum_probs=23.9
Q ss_pred CCchhHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 14 VPSSPLVGVLQDR--VNNWRETALILTAILFPAAAIWFIG 51 (94)
Q Consensus 14 apSP~LiG~iSD~--i~~lr~al~i~~~~l~la~~~~~~~ 51 (94)
..+|.+.|++-|. ..+++.+++++..++++++++++..
T Consensus 393 ~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 393 NVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred cHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 3455555555442 1248889988888888877665444
No 187
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=27.80 E-value=72 Score=25.79 Aligned_cols=33 Identities=36% Similarity=0.294 Sum_probs=26.0
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 44 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la 44 (94)
+|=..++++.|.+.|+.+ ||..++++....++.
T Consensus 169 ~G~~vg~~l~G~l~~~~~-~~~~f~~~a~l~ll~ 201 (468)
T TIGR00788 169 TGGLISSLLGGPLLDKTL-TRILFLITAALLLLQ 201 (468)
T ss_pred HHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHH
Confidence 566778899999999887 999888876666555
No 188
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=27.58 E-value=55 Score=25.87 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=15.6
Q ss_pred hcCCCCchhHHHHHHHhHH
Q 034456 10 IFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~ 28 (94)
.+|-..+.++.|+++|+++
T Consensus 304 ~~~~~ig~~~~G~lsDr~g 322 (467)
T PRK09556 304 EIGALVGSLLWGWLSDLAN 322 (467)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 3456778899999999996
No 189
>TIGR00901 2A0125 AmpG-related permease.
Probab=27.32 E-value=1.5e+02 Score=21.90 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=11.3
Q ss_pred CCchhHHHHHHHhHH
Q 034456 14 VPSSPLVGVLQDRVN 28 (94)
Q Consensus 14 apSP~LiG~iSD~i~ 28 (94)
..+-.+.|+++||++
T Consensus 259 ~~g~~~~g~l~~r~g 273 (356)
T TIGR00901 259 ILGGLIGGIIMQPLN 273 (356)
T ss_pred HHHHHHHHHHHhhhh
Confidence 345577789999997
No 190
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=27.26 E-value=54 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034456 35 LILTAILFPAAAIWFIGIFLH 55 (94)
Q Consensus 35 ~i~~~~l~la~~~~~~~a~~~ 55 (94)
....+-.++++++|+.|++.-
T Consensus 44 ~gal~~IFiGAllWL~GARig 64 (89)
T PF10762_consen 44 HGALFSIFIGALLWLVGARIG 64 (89)
T ss_pred hhHHHHHHHHHHHHHhccccc
Confidence 456677889999999999865
No 191
>PF13347 MFS_2: MFS/sugar transport protein
Probab=26.70 E-value=6.3 Score=30.72 Aligned_cols=16 Identities=44% Similarity=0.708 Sum_probs=13.3
Q ss_pred CCCCchhHHHHHHHhH
Q 034456 12 GDVPSSPLVGVLQDRV 27 (94)
Q Consensus 12 GDapSP~LiG~iSD~i 27 (94)
=|+..-|++|.+||+.
T Consensus 49 ~dai~dp~~G~~sDr~ 64 (428)
T PF13347_consen 49 WDAITDPLIGYLSDRT 64 (428)
T ss_pred hhhhcCCcEEEEEeee
Confidence 3788899999999943
No 192
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.56 E-value=5.9 Score=30.54 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=35.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 51 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~ 51 (94)
...+-.+|-..+..+.|.++|+++ =|.+++++.+..+++.++...+
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~G-Rk~~~~~~~~~~~i~~~~~~~~ 96 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYG-RKPALIISALLMIIGSILIAFA 96 (451)
T ss_pred HHHHHHhhhccccccccccccccc-cccccccccccccccccccccc
Confidence 456778899999999999999998 3677777777766666554444
No 193
>PF15345 TMEM51: Transmembrane protein 51
Probab=26.06 E-value=42 Score=26.37 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhccc
Q 034456 42 FPAAAIWFIGIFLHSVDK 59 (94)
Q Consensus 42 ~la~~~~~~~a~~~~~dr 59 (94)
-.|+++.++..|+.-+|+
T Consensus 66 G~Gv~LLLLSICL~IR~K 83 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDK 83 (233)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 335555555566554444
No 194
>PRK10429 melibiose:sodium symporter; Provisional
Probab=25.95 E-value=36 Score=27.13 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=13.9
Q ss_pred hcCCCCchhHHHHHHHhH
Q 034456 10 IFGDVPSSPLVGVLQDRV 27 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i 27 (94)
=+|-+.++.+.|++-|..
T Consensus 377 K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 377 KGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 356777888899888866
No 195
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=25.69 E-value=34 Score=28.65 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=15.8
Q ss_pred hHHHhcCCCCchhHHHHHHHh
Q 034456 6 VSIHIFGDVPSSPLVGVLQDR 26 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~ 26 (94)
+.+--+.+....|++|++||+
T Consensus 45 ~~~~~l~~~i~~Pi~G~lSDr 65 (477)
T TIGR01301 45 WLCGPLSGLLVQPLVGYLSDR 65 (477)
T ss_pred HHHHHHHHHHHHhHeeehhcC
Confidence 344556677778999999995
No 196
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.64 E-value=3e+02 Score=21.65 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=27.9
Q ss_pred hhHhHHHhcCCCCchhHHHHHHHhHH--------HHHHHH---HHHHHHHHHHHHHHHHHHH
Q 034456 3 ISTVSIHIFGDVPSSPLVGVLQDRVN--------NWRETA---LILTAILFPAAAIWFIGIF 53 (94)
Q Consensus 3 ~~~~~iHllGDapSP~LiG~iSD~i~--------~lr~al---~i~~~~l~la~~~~~~~a~ 53 (94)
+..++.-..||...=.=|-.+.+.|+ -|++-+ +..|-++.+|+.+|+.-+.
T Consensus 163 LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~~ig~~i~l~~~~ 224 (230)
T PF03904_consen 163 LFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIFAIGLFIYLYEWI 224 (230)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555556666554333346666663 266444 4455556667776665443
No 197
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=24.55 E-value=1.2e+02 Score=19.63 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034456 32 ETALILTAILFPAAAIWFIGIFLHS 56 (94)
Q Consensus 32 ~al~i~~~~l~la~~~~~~~a~~~~ 56 (94)
++...|....++-++++++|.++.+
T Consensus 30 ~Aav~~~~~~~~l~~~~~iG~~LPe 54 (67)
T PF11511_consen 30 YAAVFFLGLWFLLVALYFIGLLLPE 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCch
Confidence 4444555555555566666665543
No 198
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=24.46 E-value=1.6e+02 Score=22.60 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=12.5
Q ss_pred CCCCchhHHHHHHHhHH
Q 034456 12 GDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 12 GDapSP~LiG~iSD~i~ 28 (94)
+-..+-.+.|++.|+++
T Consensus 258 ~~i~g~~~~g~l~~r~g 274 (402)
T PRK11902 258 ATIVGALAGGTLMVRLG 274 (402)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44556677888899886
No 199
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=24.28 E-value=73 Score=23.03 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=19.6
Q ss_pred cCCCCchh-HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 11 FGDVPSSP-LVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 11 lGDapSP~-LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
+|-..+|+ +.+.+.+..+ ||..++++..+.++.+
T Consensus 130 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 130 VGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAIIVS 164 (379)
T ss_pred hHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHH
Confidence 45556664 4455555554 8888776655544433
No 200
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=24.25 E-value=95 Score=25.76 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=31.6
Q ss_pred hhhHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 2 AISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 2 A~~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
+-|.+.+..+|=+.+.+++..+.||++ -|.-++.....++++-.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt~r~~-Rr~lLl~~l~lFi~~n~ 93 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLTGRLE-RRRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHH
Confidence 347788888999999999999999998 35545444444444433
No 201
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=24.23 E-value=1.4e+02 Score=20.42 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=21.8
Q ss_pred CCCchhHHHHHHHhHHHHHHHHHHHHH
Q 034456 13 DVPSSPLVGVLQDRVNNWRETALILTA 39 (94)
Q Consensus 13 DapSP~LiG~iSD~i~~lr~al~i~~~ 39 (94)
-.|-||+++++.+.+-.+|..+.-|..
T Consensus 55 s~~qP~lvPFLK~slp~Lr~~l~~~~~ 81 (92)
T smart00549 55 SPLQPYLIPFLKNSLPLLRRELLHCAR 81 (92)
T ss_pred CCCCchhHHHHHHhhHHHHHHHHHHHH
Confidence 457899999999999878888776654
No 202
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=23.53 E-value=2.1e+02 Score=24.28 Aligned_cols=31 Identities=35% Similarity=0.601 Sum_probs=18.4
Q ss_pred HHHHhHH-----HHHHHHHHHHH-----HHHHHHHHHHHHH
Q 034456 22 VLQDRVN-----NWRETALILTA-----ILFPAAAIWFIGI 52 (94)
Q Consensus 22 ~iSD~i~-----~lr~al~i~~~-----~l~la~~~~~~~a 52 (94)
.++|.+. +||+.+++... |++.|.++|++|.
T Consensus 49 Yl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~ 89 (400)
T KOG3827|consen 49 YLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAY 89 (400)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556552 49988876654 4555555555553
No 203
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=23.51 E-value=2e+02 Score=18.17 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcccccccccc
Q 034456 34 ALILTAILFPA-AAIWFIGIFLHSVDKFSEDNED 66 (94)
Q Consensus 34 l~i~~~~l~la-~~~~~~~a~~~~~dr~~~~~~~ 66 (94)
.++..|+.++| .+...++++..-+|+.++++..
T Consensus 13 VLLISfiIlfgRl~Y~~I~a~~hHq~k~~a~~~~ 46 (59)
T PF11119_consen 13 VLLISFIILFGRLIYSAIGAWVHHQDKKQAQQIE 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccc
Confidence 34455555666 6666778888777776655433
No 204
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=23.42 E-value=80 Score=25.91 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=20.0
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 12 GDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 12 GDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
-|..||.+++.|+=.++ .|.++++.|++|
T Consensus 312 ~d~~S~lvi~i~~vgLG--------~P~l~li~Ggl~ 340 (350)
T PF15065_consen 312 VDSFSPLVIMIMAVGLG--------VPLLLLILGGLY 340 (350)
T ss_pred ccchhHHHHHHHHHHhh--------HHHHHHHHhhhe
Confidence 47788889988876666 555555555554
No 205
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=23.27 E-value=1.9e+02 Score=24.04 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=33.1
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccc
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA--IWFIGIFLHSVDK 59 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~--~~~~~a~~~~~dr 59 (94)
++-...+|.++|.+-+..+ .+.+..+...+-+++.. .|++...|.+.++
T Consensus 159 L~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~ 209 (432)
T PF06963_consen 159 LFCKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA 209 (432)
T ss_pred HHHHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 3444568999999988777 67777766666666655 3555666665554
No 206
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=23.02 E-value=1.1e+02 Score=23.59 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=11.5
Q ss_pred CCchhHHHHHHHhHH
Q 034456 14 VPSSPLVGVLQDRVN 28 (94)
Q Consensus 14 apSP~LiG~iSD~i~ 28 (94)
+.+.++.|+++|+++
T Consensus 320 ~i~~~~~g~l~dr~g 334 (479)
T PRK10077 320 LTFTVLAIMTVDKFG 334 (479)
T ss_pred HHHHHHHHHHHHHhc
Confidence 445677889999986
No 207
>PRK11010 ampG muropeptide transporter; Validated
Probab=22.94 E-value=1.7e+02 Score=23.70 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=15.1
Q ss_pred hcCCCCchhHHHHHHHhHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~ 29 (94)
.+|-..+-.+.|+++||++.
T Consensus 269 ~i~~iiG~ll~G~L~dr~g~ 288 (491)
T PRK11010 269 LLATIVGALYGGILMQRLSL 288 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34556677888999999973
No 208
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=22.68 E-value=1.2e+02 Score=26.96 Aligned_cols=49 Identities=27% Similarity=0.224 Sum_probs=0.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL 54 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~ 54 (94)
+.....++=+.+.++.|+++|+++ -|.-+.++.++.++.+++.+++...
T Consensus 57 ~~~~~~l~~~l~~~~~G~laDr~~-rk~~~~~~~~~~~~~~~~~~~~~~~ 105 (1140)
T PRK06814 57 AGAVFILPFFIFSALAGQLADKYD-KAKLAKILKFAEIGIAALAIYGFHL 105 (1140)
T ss_pred HHHHHHHHHHHHhhhHHhhhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
No 209
>PRK10873 hypothetical protein; Provisional
Probab=22.67 E-value=2.8e+02 Score=19.45 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=18.9
Q ss_pred hHhHHHhcCCCCchhHHHHHHHhHH
Q 034456 4 STVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 4 ~~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
--+..|.+-|..+|.-..+++...+
T Consensus 21 GA~gAH~l~~~l~~~~~~~~~ta~~ 45 (131)
T PRK10873 21 GAFGAHVLSKTLGAVEMGWIQTGLE 45 (131)
T ss_pred HHHHHccCcccCCHHHHHHHHHHHH
Confidence 4567899999888988877766553
No 210
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=22.66 E-value=1e+02 Score=23.96 Aligned_cols=40 Identities=8% Similarity=-0.129 Sum_probs=20.3
Q ss_pred hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
.+..+++-..+|++.|++ |..+.+...++++.++.+++.+
T Consensus 379 ~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~ 418 (432)
T PRK10406 379 AVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFL 418 (432)
T ss_pred HHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHH
Confidence 344543233478888866 5444344444444444444433
No 211
>PTZ00207 hypothetical protein; Provisional
Probab=22.62 E-value=1.5e+02 Score=25.70 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 034456 19 LVGVLQDRVNNWRETALILTAILFP 43 (94)
Q Consensus 19 LiG~iSD~i~~lr~al~i~~~~l~l 43 (94)
+.|+++|+++ -|..+++..++..+
T Consensus 80 p~G~L~Dr~G-~R~vllig~ll~~i 103 (591)
T PTZ00207 80 PYSFIYDYLG-PRPIFVLSMTVFCL 103 (591)
T ss_pred HHHHHHHHhC-cHHHHHHHHHHHHH
Confidence 5799999997 34444444433333
No 212
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=22.02 E-value=1.6e+02 Score=19.32 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 034456 32 ETALILTAILFPAAAIWFIGIFLHSVDKFSEDN 64 (94)
Q Consensus 32 ~al~i~~~~l~la~~~~~~~a~~~~~dr~~~~~ 64 (94)
.++++......+.+++|..--.....|+-..|+
T Consensus 11 qgL~ls~i~V~~~~~~wi~~Ra~~~~DKT~~eR 43 (72)
T PF13268_consen 11 QGLLLSSILVLLVSGIWILWRALRKKDKTAKER 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 355555555566666666555555667654444
No 213
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.91 E-value=1.5e+02 Score=20.92 Aligned_cols=6 Identities=0% Similarity=-0.368 Sum_probs=1.5
Q ss_pred hccccc
Q 034456 56 SVDKFS 61 (94)
Q Consensus 56 ~~dr~~ 61 (94)
++-|+|
T Consensus 89 rR~~Kk 94 (122)
T PF01102_consen 89 RRLRKK 94 (122)
T ss_dssp HHHS--
T ss_pred HHHhcc
Confidence 333344
No 214
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.87 E-value=1.1e+02 Score=21.13 Aligned_cols=19 Identities=11% Similarity=0.321 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034456 32 ETALILTAILFPAAAIWFI 50 (94)
Q Consensus 32 ~al~i~~~~l~la~~~~~~ 50 (94)
..+++..+|++++.++|++
T Consensus 54 ~~~~~~~~w~~~A~~ly~~ 72 (103)
T PF11027_consen 54 SMFMMMMLWMVLAMALYLL 72 (103)
T ss_pred cHHHHHHHHHHHHHHHHHc
Confidence 3566777777777777654
No 215
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=21.84 E-value=1.2e+02 Score=23.09 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=13.5
Q ss_pred hcCCCCchhHHHHHHHhHH
Q 034456 10 IFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~ 28 (94)
.++-..+.++.|+++||++
T Consensus 267 ~i~~ii~~~~~~~l~~r~g 285 (437)
T TIGR00792 267 IVAGLIGVLLFPRLVKKFG 285 (437)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3444556678889999986
No 216
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.66 E-value=3.1e+02 Score=20.26 Aligned_cols=21 Identities=5% Similarity=-0.159 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhccccccc
Q 034456 43 PAAAIWFIGIFLHSVDKFSED 63 (94)
Q Consensus 43 la~~~~~~~a~~~~~dr~~~~ 63 (94)
.++.-|+++..|.++++.+.+
T Consensus 113 g~~l~fl~~r~ysRkl~~~~~ 133 (150)
T COG3086 113 GLALGFLLARRYSRKLAKRTE 133 (150)
T ss_pred HHHHHHHHHHHHHHHhhhccc
Confidence 334445566666666555443
No 217
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=21.46 E-value=1.3e+02 Score=24.28 Aligned_cols=35 Identities=23% Similarity=0.063 Sum_probs=21.4
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 45 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~ 45 (94)
=+|-+.+..+.|++-|+.+ -+..+....++.+.++
T Consensus 348 Glg~~iG~~igG~l~~~~g-~~~~~~~~~~~~v~a~ 382 (400)
T PF03825_consen 348 GLGGAIGSLIGGWLYDAFG-ARGMFDWSAVFLVFAV 382 (400)
T ss_pred hHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHH
Confidence 3566677888999999886 3444433334433333
No 218
>PF12501 DUF3708: Phosphate ATP-binding cassette transporter; InterPro: IPR022182 This domain family is found in bacteria, and is typically between 143 and 173 amino acids in length. The family is found in association with PF00528 from PFAM. There is a single completely conserved residue P that may be functionally important.
Probab=21.37 E-value=2.3e+02 Score=20.67 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=23.4
Q ss_pred HhcCCCCchhHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNW----RETALILTAILFPAAAIW 48 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~l----r~al~i~~~~l~la~~~~ 48 (94)
-++|..+.|++.- ..++.+++ +..+.++.+.+.++|.+|
T Consensus 128 ~~l~~~~~~~~~~-aA~~~~~~~~~~~~~~~vlvl~~a~aG~~~ 170 (170)
T PF12501_consen 128 VALASEVSPAILA-AAQHYRALQSVSRWIMTVLVLALALAGFAY 170 (170)
T ss_pred ccccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567777887776 55555443 355556666666665543
No 219
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=21.26 E-value=1.6e+02 Score=22.08 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=13.7
Q ss_pred cCCCCchhHHHHHHHhHHH
Q 034456 11 FGDVPSSPLVGVLQDRVNN 29 (94)
Q Consensus 11 lGDapSP~LiG~iSD~i~~ 29 (94)
+|=-+.++++|++.||..+
T Consensus 93 ~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 93 IGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3334567889999998864
Done!