Query 034456
Match_columns 94
No_of_seqs 104 out of 142
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 93.3 0.033 1.1E-06 40.6 1.9 47 3-50 386-432 (451)
2 3o7q_A L-fucose-proton symport 84.2 1.2 4E-05 32.3 4.2 43 5-48 66-108 (438)
3 1pw4_A Glycerol-3-phosphate tr 81.7 0.93 3.2E-05 32.9 2.7 42 5-47 67-108 (451)
4 4aps_A DI-OR tripeptide H+ sym 81.1 0.93 3.2E-05 33.6 2.6 41 8-49 154-194 (491)
5 4gc0_A D-xylose-proton symport 80.7 0.72 2.5E-05 34.1 1.9 39 7-46 62-100 (491)
6 3o7q_A L-fucose-proton symport 66.8 1 3.6E-05 32.5 -0.3 32 8-39 389-420 (438)
7 4aps_A DI-OR tripeptide H+ sym 63.6 4 0.00014 30.2 2.4 35 5-40 59-94 (491)
8 2xut_A Proton/peptide symporte 63.0 2.9 9.8E-05 31.3 1.5 24 5-28 59-83 (524)
9 2xut_A Proton/peptide symporte 56.3 2.6 8.8E-05 31.6 0.2 39 9-48 157-195 (524)
10 2cfq_A Lactose permease; trans 51.3 5.4 0.00019 29.4 1.3 37 10-47 359-395 (417)
11 2gfp_A EMRD, multidrug resista 47.7 1.8 6.2E-05 30.8 -1.8 24 5-28 40-63 (375)
12 2zxe_G FXYD10, phospholemman-l 31.1 39 0.0013 21.3 2.7 22 28-49 17-38 (74)
13 2gfp_A EMRD, multidrug resista 29.2 39 0.0013 23.7 2.8 37 9-46 133-169 (375)
14 2dw3_A Intrinsic membrane prot 27.9 61 0.0021 20.6 3.3 28 32-59 32-59 (77)
15 2knc_B Integrin beta-3; transm 24.7 41 0.0014 20.9 2.0 49 35-84 16-68 (79)
16 2jo1_A Phospholemman; FXYD1, N 21.9 1.5E+02 0.0053 18.4 5.5 25 28-52 14-38 (72)
17 2nrg_A Intrinsic membrane prot 20.1 97 0.0033 19.8 3.1 35 32-66 33-67 (82)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.32 E-value=0.033 Score=40.63 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=36.5
Q ss_pred hhHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 3 ISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFI 50 (94)
Q Consensus 3 ~~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~ 50 (94)
+..+...++|-+.+|++.|++.|+.+ ++..++++..+.+++.++++.
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Confidence 34444555588899999999999887 888888888888877776654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=84.24 E-value=1.2 Score=32.26 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.9
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
+.....+|.+.+.++.|+++||++ -|..+.+..++..++.+++
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g-~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLS-YKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhc-chHHHHHHHHHHHHHHHHH
Confidence 456677788889999999999997 4555555555544444433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=81.68 E-value=0.93 Score=32.86 Aligned_cols=42 Identities=17% Similarity=-0.045 Sum_probs=29.3
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
+..+..+|.+.+.++.|+++|+++ -|..+.++.++..++.++
T Consensus 67 ~~~~~~~~~~~~~~~~G~l~dr~g-~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 67 ALSGISIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHH
Confidence 456677888888999999999997 455555555544444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=81.14 E-value=0.93 Score=33.64 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF 49 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~ 49 (94)
..-+|-..+|++.|++.++.+ ||..++++....+++.++++
T Consensus 154 ~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 154 GINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 345677788999999999887 99999988776666665544
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=80.67 E-value=0.72 Score=34.14 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=29.8
Q ss_pred HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
.+-.+|=+.++.+.|+++|+++ -|..++++.++..++++
T Consensus 62 s~~~~G~~iG~~~~G~laDr~G-Rk~~l~~~~~l~~i~~i 100 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFG-RRDSLKIAAVLFFISGV 100 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 3456677788999999999998 47777777776666654
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=66.85 E-value=1 Score=32.53 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=24.9
Q ss_pred HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHH
Q 034456 8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTA 39 (94)
Q Consensus 8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~ 39 (94)
...+|-+.+|++.|++.|+.++++.+++++.+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 420 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44578888999999999998767777775433
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=63.62 E-value=4 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=23.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHh-HHHHHHHHHHHHHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAI 40 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~-i~~lr~al~i~~~~ 40 (94)
++....+|-..+.++.|+++|+ ++ -|..+.++.++
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g-~r~~~~~~~~~ 94 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIG-ARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence 3445566667788999999999 77 34444444333
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=62.99 E-value=2.9 Score=31.32 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=19.0
Q ss_pred HhHHHhcCCCCchhHHHHHHHhH-H
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRV-N 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i-~ 28 (94)
++....+|...+.++.|+++|++ +
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~dr~~g 83 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIADRFFG 83 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667777889999999999 7
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=56.30 E-value=2.6 Score=31.58 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.0
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 48 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~ 48 (94)
--+|-+.+|.+.|++.|+.+ ||..++++....+++.+++
T Consensus 157 ~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 157 INFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHH
Confidence 34566778889999988776 9999888777666655544
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=51.33 E-value=5.4 Score=29.41 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=27.2
Q ss_pred hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456 10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 47 (94)
Q Consensus 10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~ 47 (94)
-+|-+.+|++.|++.|+.+ ++..+.++..+.++++++
T Consensus 359 ~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence 3667788999999999876 777777766666665544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=47.66 E-value=1.8 Score=30.84 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=18.7
Q ss_pred HhHHHhcCCCCchhHHHHHHHhHH
Q 034456 5 TVSIHIFGDVPSSPLVGVLQDRVN 28 (94)
Q Consensus 5 ~~~iHllGDapSP~LiG~iSD~i~ 28 (94)
+.....+|...+.++.|+++||++
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g 63 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVG 63 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566777778899999999985
No 12
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=31.08 E-value=39 Score=21.35 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034456 28 NNWRETALILTAILFPAAAIWF 49 (94)
Q Consensus 28 ~~lr~al~i~~~~l~la~~~~~ 49 (94)
+.||..=+++..++++.|++.+
T Consensus 17 ~tLRigGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheeccchhHHHHHHHHHHHH
Confidence 3477766666666665555543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=29.22 E-value=39 Score=23.72 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=26.1
Q ss_pred HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456 9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 46 (94)
Q Consensus 9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~ 46 (94)
.-+|-..+|.+.|++.++.+ ||..+.+.....++..+
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWN-WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHH-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence 34566677888898888776 99888776655554443
No 14
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=27.91 E-value=61 Score=20.55 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034456 32 ETALILTAILFPAAAIWFIGIFLHSVDK 59 (94)
Q Consensus 32 ~al~i~~~~l~la~~~~~~~a~~~~~dr 59 (94)
++...|...+++-++++++|.++.++.|
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 4455555555666666667766644333
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.66 E-value=41 Score=20.88 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hccc---cccccccccccccCCCCcccccccc
Q 034456 35 LILTAILFPAAAIWFIGIFLH-SVDK---FSEDNEDKVSRIERSKTTPLLEDEK 84 (94)
Q Consensus 35 ~i~~~~l~la~~~~~~~a~~~-~~dr---~~~~~~~~~~~~~~~~~~~ll~~~~ 84 (94)
.+...++++|.+++++.-++. -.|| .|-|+|.+-. .....+.||-++.+
T Consensus 16 gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~-~w~~~~NPlyk~~t 68 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARA-KWDTANNPLYKEAT 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTTCCHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccCCCCCccCCc
Confidence 344455666666655554433 3333 2223333222 23344456655543
No 16
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.86 E-value=1.5e+02 Score=18.45 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456 28 NNWRETALILTAILFPAAAIWFIGI 52 (94)
Q Consensus 28 ~~lr~al~i~~~~l~la~~~~~~~a 52 (94)
+.||..=+++..++++.|++.++.-
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHcC
Confidence 3588877777777777777665553
No 17
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=20.10 E-value=97 Score=19.84 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 034456 32 ETALILTAILFPAAAIWFIGIFLHSVDKFSEDNED 66 (94)
Q Consensus 32 ~al~i~~~~l~la~~~~~~~a~~~~~dr~~~~~~~ 66 (94)
++...|....++-++++++|.++.++.|..-+-..
T Consensus 33 ~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~P~~ 67 (82)
T 2nrg_A 33 WAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAPNI 67 (82)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSSTTTTTCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccCCCCcc
Confidence 45555666666666777777776555554444333
Done!