Query 034458
Match_columns 94
No_of_seqs 19 out of 21
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 03:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09813 Coiled-coil_56: Coile 77.9 3 6.6E-05 29.7 3.2 33 25-57 36-70 (100)
2 PF13150 DUF3989: Protein of u 76.3 5.8 0.00013 26.7 4.1 22 33-54 25-46 (85)
3 PF10864 DUF2663: Protein of u 70.6 14 0.0003 27.1 5.2 33 28-60 12-44 (130)
4 PHA03079 hypothetical protein; 66.0 6.5 0.00014 27.6 2.6 27 31-57 60-86 (87)
5 TIGR03017 EpsF chain length de 62.1 14 0.00031 28.8 4.1 27 31-57 8-34 (444)
6 PHA02649 hypothetical protein; 56.2 27 0.00058 24.9 4.3 32 32-67 62-95 (95)
7 PHA02844 putative transmembran 56.2 20 0.00044 24.5 3.6 24 27-54 46-69 (75)
8 PF09624 DUF2393: Protein of u 55.6 29 0.00063 23.8 4.3 26 31-56 10-35 (149)
9 PRK09731 putative general secr 53.3 13 0.00029 28.0 2.5 37 19-55 16-55 (178)
10 COG0836 {ManC} Mannose-1-phosp 46.9 12 0.00026 31.3 1.6 17 18-34 264-280 (333)
11 PF06024 DUF912: Nucleopolyhed 44.6 8.7 0.00019 25.9 0.4 19 39-58 68-86 (101)
12 PF11688 DUF3285: Protein of u 42.3 30 0.00066 21.8 2.5 16 37-52 25-40 (45)
13 TIGR03007 pepcterm_ChnLen poly 41.9 39 0.00084 27.0 3.7 25 32-56 9-33 (498)
14 PRK10815 sensor protein PhoQ; 40.7 31 0.00067 27.8 3.0 27 32-58 9-35 (485)
15 PRK15136 multidrug efflux syst 39.7 66 0.0014 25.6 4.6 20 37-56 23-42 (390)
16 TIGR02161 napC_nirT periplasmi 39.6 89 0.0019 23.4 5.1 39 28-66 5-48 (185)
17 PF07077 DUF1345: Protein of u 39.5 30 0.00065 25.6 2.5 15 53-67 136-150 (180)
18 cd02509 GDP-M1P_Guanylyltransf 39.2 9.5 0.00021 28.6 -0.1 15 18-32 260-274 (274)
19 PRK15460 cpsB mannose-1-phosph 38.1 20 0.00043 30.2 1.6 17 18-34 272-288 (478)
20 PRK11519 tyrosine kinase; Prov 37.6 56 0.0012 28.3 4.2 30 28-57 23-52 (719)
21 PF06196 DUF997: Protein of un 37.5 85 0.0018 20.8 4.2 32 34-65 2-33 (80)
22 PHA02819 hypothetical protein; 36.7 45 0.00098 22.6 2.9 24 27-54 44-67 (71)
23 PF04906 Tweety: Tweety; Inte 35.8 6.3 0.00014 32.2 -1.6 15 54-68 235-249 (406)
24 PHA03054 IMV membrane protein; 35.6 48 0.001 22.6 2.9 24 27-54 46-69 (72)
25 PHA02650 hypothetical protein; 35.4 47 0.001 23.1 2.9 24 27-54 47-70 (81)
26 PF02706 Wzz: Chain length det 35.1 13 0.00027 24.1 0.0 25 32-56 11-36 (152)
27 PF12273 RCR: Chitin synthesis 35.0 30 0.00064 23.6 1.8 16 38-53 2-17 (130)
28 PF02495 7kD_coat: 7kD viral c 34.5 69 0.0015 19.6 3.2 26 40-68 4-29 (59)
29 PF14004 DUF4227: Protein of u 34.0 53 0.0011 21.8 2.8 16 45-60 11-26 (71)
30 PRK15471 chain length determin 33.2 78 0.0017 25.4 4.2 30 27-57 22-52 (325)
31 PF04999 FtsL: Cell division p 33.2 82 0.0018 20.1 3.6 20 39-58 18-37 (97)
32 PHA02692 hypothetical protein; 33.1 82 0.0018 21.3 3.6 24 27-54 43-67 (70)
33 PHA02818 hypothetical protein; 32.8 82 0.0018 22.4 3.7 25 32-61 62-86 (92)
34 TIGR01479 GMP_PMI mannose-1-ph 31.3 30 0.00064 28.4 1.5 18 17-34 262-279 (468)
35 cd07912 Tweety_N N-terminal do 30.2 68 0.0015 27.0 3.5 37 33-69 231-273 (418)
36 COG4736 CcoQ Cbb3-type cytochr 29.3 1.4E+02 0.0031 19.2 4.2 26 28-53 2-27 (60)
37 PRK10617 cytochrome c-type pro 28.7 1.4E+02 0.003 22.9 4.6 31 28-58 14-44 (200)
38 KOG3970 Predicted E3 ubiquitin 28.3 1.2E+02 0.0026 25.3 4.5 32 32-64 249-280 (299)
39 PHA02975 hypothetical protein; 27.2 82 0.0018 21.3 2.9 24 27-54 42-65 (69)
40 COG3771 Predicted membrane pro 27.2 75 0.0016 22.8 2.8 9 56-64 16-24 (97)
41 TIGR01006 polys_exp_MPA1 polys 26.3 1.2E+02 0.0026 21.8 3.8 24 33-56 17-41 (226)
42 PF04612 T2SM: Type II secreti 26.0 22 0.00049 24.0 0.0 30 27-56 6-35 (160)
43 PRK10381 LPS O-antigen length 25.8 1.3E+02 0.0029 24.5 4.3 29 28-57 32-61 (377)
44 PF01127 Sdh_cyt: Succinate de 25.7 1.4E+02 0.0029 19.0 3.6 32 12-47 4-35 (121)
45 PF08525 OapA_N: Opacity-assoc 25.3 76 0.0016 17.6 2.1 21 29-49 3-23 (30)
46 KOG3035 Isoamyl acetate-hydrol 25.1 39 0.00084 27.5 1.2 28 60-87 76-103 (245)
47 PF12685 SpoIIIAH: SpoIIIAH-li 24.9 24 0.00053 25.7 0.0 24 36-60 2-25 (196)
48 PF15168 TRIQK: Triple QxxK/R 24.4 1.2E+02 0.0027 21.0 3.4 22 40-61 53-74 (79)
49 PF12279 DUF3619: Protein of u 23.9 1.4E+02 0.003 21.5 3.7 27 29-55 67-93 (131)
50 PF13038 DUF3899: Domain of un 23.9 1.6E+02 0.0035 18.7 3.7 29 28-56 63-91 (92)
51 TIGR03794 NHPM_micro_HlyD NHPM 23.5 1.1E+02 0.0024 24.2 3.4 23 35-57 18-40 (421)
52 PHA02702 ORF033 IMV membrane p 23.4 1E+02 0.0022 21.3 2.8 22 37-58 47-68 (78)
53 PF10192 GpcrRhopsn4: Rhodopsi 23.3 1.7E+02 0.0038 21.9 4.3 43 15-64 15-57 (257)
54 PRK14889 VKOR family protein; 23.2 2.8E+02 0.006 19.6 5.5 42 34-78 6-49 (143)
55 PF05309 TraE: TraE protein; 23.0 1.9E+02 0.0041 20.7 4.3 27 27-53 8-34 (187)
56 PHA03164 hypothetical protein; 22.5 73 0.0016 22.5 2.0 50 1-54 18-77 (88)
57 PRK10040 hypothetical protein; 22.3 1.2E+02 0.0026 19.7 2.8 14 59-72 14-27 (52)
58 TIGR03142 cytochro_ccmI cytoch 22.1 1.3E+02 0.0027 20.4 3.1 22 37-58 93-114 (117)
59 PRK09841 cryptic autophosphory 22.1 1.5E+02 0.0033 25.6 4.2 29 28-57 23-52 (726)
60 TIGR01843 type_I_hlyD type I s 21.9 1E+02 0.0022 23.3 2.8 22 36-57 4-25 (423)
61 PF02937 COX6C: Cytochrome c o 21.7 2.5E+02 0.0054 18.5 4.5 28 32-59 13-40 (73)
62 COG2148 WcaJ Sugar transferase 21.5 2.7E+02 0.0057 22.0 5.1 36 24-59 31-66 (226)
63 TIGR02970 succ_dehyd_cytB succ 21.2 1.9E+02 0.0041 19.5 3.8 23 23-49 13-35 (120)
64 PF10968 DUF2770: Protein of u 20.2 1.6E+02 0.0034 17.8 2.8 22 35-56 13-36 (36)
65 COG1495 DsbB Disulfide bond fo 20.2 1.9E+02 0.0041 21.1 3.8 30 33-62 10-39 (170)
66 PF12575 DUF3753: Protein of u 20.1 1.3E+02 0.0027 20.4 2.7 17 38-54 53-69 (72)
No 1
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=77.86 E-value=3 Score=29.71 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=25.4
Q ss_pred ccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 25 EFGSWSTLA--ERHRFLLTALVLLGLLCTIYLYFA 57 (94)
Q Consensus 25 elgSWstL~--~RHrFLLt~L~lL~~LCTiYLYFA 57 (94)
|+-.|..=. +|.|-++|.|+|.+|..-||.|--
T Consensus 36 E~~~~kr~~~~~R~rN~~Tgl~L~~~v~gIY~YTi 70 (100)
T PF09813_consen 36 ELQQLKRKLQRRRRRNLLTGLALGAFVVGIYAYTI 70 (100)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhee
Confidence 445565433 467889999999999999999843
No 2
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=76.35 E-value=5.8 Score=26.72 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034458 33 AERHRFLLTALVLLGLLCTIYL 54 (94)
Q Consensus 33 ~~RHrFLLt~L~lL~~LCTiYL 54 (94)
=+|++..|+|+++.+.||...+
T Consensus 25 ~~R~~vvl~ml~~fa~l~ly~~ 46 (85)
T PF13150_consen 25 KQRLRVVLVMLVLFAALCLYMT 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999996444
No 3
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=70.55 E-value=14 Score=27.09 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034458 28 SWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~~LCTiYLYFAVTL 60 (94)
-|..|-.||++...+-++..++-.||+|+-++-
T Consensus 12 K~e~l~k~~~~~~~~~l~~~~~~~~y~~~~~~~ 44 (130)
T PF10864_consen 12 KWERLKKQHLFWQWLFLFSLFLFFIYFYIKVIG 44 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 488999999999887777777777888877765
No 4
>PHA03079 hypothetical protein; Provisional
Probab=65.97 E-value=6.5 Score=27.63 Aligned_cols=27 Identities=41% Similarity=0.568 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 31 TLAERHRFLLTALVLLGLLCTIYLYFA 57 (94)
Q Consensus 31 tL~~RHrFLLt~L~lL~~LCTiYLYFA 57 (94)
.++.|.-++|.+++.|..--||++||.
T Consensus 60 Rl~kRNy~~L~~~~~~~~~~~~~~y~~ 86 (87)
T PHA03079 60 RLVSRNYQMLLALVALVITLTIFYYFI 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheee
Confidence 367788888888988999999999984
No 5
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=62.13 E-value=14 Score=28.83 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 31 TLAERHRFLLTALVLLGLLCTIYLYFA 57 (94)
Q Consensus 31 tL~~RHrFLLt~L~lL~~LCTiYLYFA 57 (94)
.++.||+++..+.+++++++++|..|-
T Consensus 8 ~il~rr~~lil~v~~~~~~~~~~~~~~ 34 (444)
T TIGR03017 8 LILKARYWIVLFTLLITVTTTAVVSLL 34 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888878888888888876553
No 6
>PHA02649 hypothetical protein; Provisional
Probab=56.25 E-value=27 Score=24.94 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCccc
Q 034458 32 LAERHRFLLTALVLLGLLCTIYLYFAVTLG--AATSCS 67 (94)
Q Consensus 32 L~~RHrFLLt~L~lL~~LCTiYLYFAVTLG--a~~sCs 67 (94)
++.|.-++| +.+..|++++||-++.. .+|-||
T Consensus 62 l~kRNy~~L----li~~~i~s~~y~~~~~~~~~~~~~~ 95 (95)
T PHA02649 62 VIKRNYKIL----LISSFCVSMLYFLIHKEENLNDNGS 95 (95)
T ss_pred HHHHhHHHH----HHHHHHHHHHHHHHHHhhhccccCC
Confidence 445554442 26777899999998874 334454
No 7
>PHA02844 putative transmembrane protein; Provisional
Probab=56.21 E-value=20 Score=24.53 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFLLTALVLLGLLCTIYL 54 (94)
Q Consensus 27 gSWstL~~RHrFLLt~L~lL~~LCTiYL 54 (94)
.+|..++ +++.+.++++++|..||
T Consensus 46 ~~~~~~i----i~i~~v~~~~~~~flYL 69 (75)
T PHA02844 46 SSTKIWI----LTIIFVVFATFLTFLYL 69 (75)
T ss_pred hhHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4576666 66777788888887776
No 8
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=55.64 E-value=29 Score=23.75 Aligned_cols=26 Identities=12% Similarity=0.370 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 31 TLAERHRFLLTALVLLGLLCTIYLYF 56 (94)
Q Consensus 31 tL~~RHrFLLt~L~lL~~LCTiYLYF 56 (94)
.+.+|++++...+.++++++.+..||
T Consensus 10 ~i~~~~k~~~~~~~~~~~i~~~~~~~ 35 (149)
T PF09624_consen 10 GIKLRKKILALSFIIASFILAFLIPF 35 (149)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46788885444444444444443433
No 9
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=53.27 E-value=13 Score=28.02 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=30.0
Q ss_pred cccccccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 19 RQFTKDEF---GSWSTLAERHRFLLTALVLLGLLCTIYLY 55 (94)
Q Consensus 19 rqf~~del---gSWstL~~RHrFLLt~L~lL~~LCTiYLY 55 (94)
||.++.|- +-|..+-+|-|-|+..++++.++|.+|.=
T Consensus 16 ~~~~~~~~~~~~~W~~ls~REq~ll~~~g~vL~l~i~Y~~ 55 (178)
T PRK09731 16 RQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVL 55 (178)
T ss_pred HHhcchhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566553 67999999999999999999999988653
No 10
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=46.94 E-value=12 Score=31.27 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=13.9
Q ss_pred cccccccccCCHHHHHH
Q 034458 18 KRQFTKDEFGSWSTLAE 34 (94)
Q Consensus 18 krqf~~delgSWstL~~ 34 (94)
.-.|-|+|+|||++|.+
T Consensus 264 p~~f~WsDlGsW~Al~~ 280 (333)
T COG0836 264 PADFGWSDLGSWHALWE 280 (333)
T ss_pred ecCCCcccccCHHHHHH
Confidence 34578999999999875
No 11
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=44.61 E-value=8.7 Score=25.93 Aligned_cols=19 Identities=42% Similarity=0.863 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034458 39 LLTALVLLGLLCTIYLYFAV 58 (94)
Q Consensus 39 LLt~L~lL~~LCTiYLYFAV 58 (94)
+++.++++.+|..|| ||-|
T Consensus 68 lls~v~IlVily~Iy-YFVI 86 (101)
T PF06024_consen 68 LLSFVCILVILYAIY-YFVI 86 (101)
T ss_pred HHHHHHHHHHHhhhe-EEEE
Confidence 344444445555555 5543
No 12
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=42.26 E-value=30 Score=21.82 Aligned_cols=16 Identities=50% Similarity=0.686 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 034458 37 RFLLTALVLLGLLCTI 52 (94)
Q Consensus 37 rFLLt~L~lL~~LCTi 52 (94)
-|-||++++|+||..|
T Consensus 25 HF~LT~~gll~~lv~l 40 (45)
T PF11688_consen 25 HFGLTAVGLLGFLVGL 40 (45)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4889999999998765
No 13
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.92 E-value=39 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 32 LAERHRFLLTALVLLGLLCTIYLYF 56 (94)
Q Consensus 32 L~~RHrFLLt~L~lL~~LCTiYLYF 56 (94)
.+.||+|+..+..+++++.++|.+|
T Consensus 9 ~l~rrk~~i~~~~~~~~~~~~~~~~ 33 (498)
T TIGR03007 9 GIWRRRWLFVAVAWVVMIVGWGVVY 33 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777765555666655555544
No 14
>PRK10815 sensor protein PhoQ; Provisional
Probab=40.75 E-value=31 Score=27.78 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 32 LAERHRFLLTALVLLGLLCTIYLYFAV 58 (94)
Q Consensus 32 L~~RHrFLLt~L~lL~~LCTiYLYFAV 58 (94)
+=-|++||+.++++..+|.++|-=.|+
T Consensus 9 ~sl~~~~~~~~~~~~~~l~~~~~~~~~ 35 (485)
T PRK10815 9 LSLRVRFLLATAAVVLALSLAYGMVAL 35 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcceeE
Confidence 446999999999999999998864443
No 15
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=39.73 E-value=66 Score=25.58 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034458 37 RFLLTALVLLGLLCTIYLYF 56 (94)
Q Consensus 37 rFLLt~L~lL~~LCTiYLYF 56 (94)
.+++.+++++...|.+++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (390)
T PRK15136 23 ALLLLTLLFIIIGVAYGIYW 42 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556656665
No 16
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=39.61 E-value=89 Score=23.38 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCcc
Q 034458 28 SWSTLAERHRFLLTALVLLGLLCTIYLYFAVT-----LGAATSC 66 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~~LCTiYLYFAVT-----LGa~~sC 66 (94)
.|+.+.+.-++.+.++++++|+-.|-+|+++. -+.+..|
T Consensus 5 ~~~~~~k~~~~~~~~ll~~g~~~G~~~~~~~~~~~~~T~~~~fC 48 (185)
T TIGR02161 5 FWKWLRRPSRLALGTLLLGGFVGGIVFWGGFNTGLEATNTEEFC 48 (185)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchH
Confidence 47777666666666666666666666665432 2455555
No 17
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=39.51 E-value=30 Score=25.61 Aligned_cols=15 Identities=40% Similarity=0.813 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCCccc
Q 034458 53 YLYFAVTLGAATSCS 67 (94)
Q Consensus 53 YLYFAVTLGa~~sCs 67 (94)
|+|||.|+|.+-+=|
T Consensus 136 FlYfsftiG~t~q~S 150 (180)
T PF07077_consen 136 FLYFSFTIGMTFQTS 150 (180)
T ss_pred hhHHHHHHHhhcccc
Confidence 578899888765433
No 18
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=39.19 E-value=9.5 Score=28.59 Aligned_cols=15 Identities=33% Similarity=0.787 Sum_probs=11.9
Q ss_pred cccccccccCCHHHH
Q 034458 18 KRQFTKDEFGSWSTL 32 (94)
Q Consensus 18 krqf~~delgSWstL 32 (94)
.-.|.|+|+|||.+|
T Consensus 260 ~~~~~W~D~G~w~~~ 274 (274)
T cd02509 260 PADFGWSDLGSWDAL 274 (274)
T ss_pred ecCCCcCcccCcccC
Confidence 445789999999874
No 19
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=38.05 E-value=20 Score=30.24 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.2
Q ss_pred cccccccccCCHHHHHH
Q 034458 18 KRQFTKDEFGSWSTLAE 34 (94)
Q Consensus 18 krqf~~delgSWstL~~ 34 (94)
.-.|.|+|+|||.+|.+
T Consensus 272 p~~f~WsDvGsW~sl~~ 288 (478)
T PRK15460 272 PMDAGWSDVGSWSSLWE 288 (478)
T ss_pred ecCCCccccCCHHHHHH
Confidence 44678999999999876
No 20
>PRK11519 tyrosine kinase; Provisional
Probab=37.58 E-value=56 Score=28.25 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 28 SWSTLAERHRFLLTALVLLGLLCTIYLYFA 57 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~~LCTiYLYFA 57 (94)
-|..+.+|-++.+...++...+..+|++++
T Consensus 23 l~~~l~r~~~~i~~~~~~~~~~a~~y~~~~ 52 (719)
T PRK11519 23 LVGTVIEARWWVIGITAVFALCAVVYTFFA 52 (719)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 466655555555555555555777787765
No 21
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=37.47 E-value=85 Score=20.83 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 034458 34 ERHRFLLTALVLLGLLCTIYLYFAVTLGAATS 65 (94)
Q Consensus 34 ~RHrFLLt~L~lL~~LCTiYLYFAVTLGa~~s 65 (94)
|-||=-+.++++..+-...+.+||..+|+.+.
T Consensus 2 qa~rEA~~tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 2 QANREARWTLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 56777788888888888889999999987764
No 22
>PHA02819 hypothetical protein; Provisional
Probab=36.74 E-value=45 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFLLTALVLLGLLCTIYL 54 (94)
Q Consensus 27 gSWstL~~RHrFLLt~L~lL~~LCTiYL 54 (94)
-+|..++ +++.+.++++++|..||
T Consensus 44 ~~~~~~i----i~l~~~~~~~~~~flYL 67 (71)
T PHA02819 44 FLRYYLI----IGLVTIVFVIIFIIFYL 67 (71)
T ss_pred hhHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4566665 55777778888887776
No 23
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=35.82 E-value=6.3 Score=32.20 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=11.1
Q ss_pred HHHHHHhCCCCcccC
Q 034458 54 LYFAVTLGAATSCSG 68 (94)
Q Consensus 54 LYFAVTLGa~~sCsG 68 (94)
+|+|++.|.+|-|.-
T Consensus 235 ~~la~aV~~SDFC~~ 249 (406)
T PF04906_consen 235 LELAAAVGLSDFCVD 249 (406)
T ss_pred HHHHhccchhhhccC
Confidence 577777888887764
No 24
>PHA03054 IMV membrane protein; Provisional
Probab=35.59 E-value=48 Score=22.60 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFLLTALVLLGLLCTIYL 54 (94)
Q Consensus 27 gSWstL~~RHrFLLt~L~lL~~LCTiYL 54 (94)
-+|..++ +++.+.++++++|..||
T Consensus 46 ~~~~~~i----i~l~~v~~~~l~~flYL 69 (72)
T PHA03054 46 WGWYWLI----IIFFIVLILLLLIYLYL 69 (72)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4566665 55677777888887776
No 25
>PHA02650 hypothetical protein; Provisional
Probab=35.45 E-value=47 Score=23.06 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFLLTALVLLGLLCTIYL 54 (94)
Q Consensus 27 gSWstL~~RHrFLLt~L~lL~~LCTiYL 54 (94)
-+|..++ +++.+.++++++|..||
T Consensus 47 ~~~~~~i----i~i~~v~i~~l~~flYL 70 (81)
T PHA02650 47 FNGQNFI----FLIFSLIIVALFSFFVF 70 (81)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4566654 55667777778877666
No 26
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=35.10 E-value=13 Score=24.05 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH
Q 034458 32 LAERHRFLLTALVLLGLLCT-IYLYF 56 (94)
Q Consensus 32 L~~RHrFLLt~L~lL~~LCT-iYLYF 56 (94)
.+.||+++..+.++++++.+ +|.|+
T Consensus 11 ~l~r~~~~i~~~~~l~~~~a~~~~~~ 36 (152)
T PF02706_consen 11 ILWRRKWLIIIVTLLFAILAFIYAFF 36 (152)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777666666655444 44444
No 27
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.97 E-value=30 Score=23.63 Aligned_cols=16 Identities=19% Similarity=0.658 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 034458 38 FLLTALVLLGLLCTIY 53 (94)
Q Consensus 38 FLLt~L~lL~~LCTiY 53 (94)
|+|.++++++|+-.|.
T Consensus 2 W~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLF 17 (130)
T ss_pred eeeHHHHHHHHHHHHH
Confidence 4444444444433333
No 28
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=34.50 E-value=69 Score=19.58 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccC
Q 034458 40 LTALVLLGLLCTIYLYFAVTLGAATSCSG 68 (94)
Q Consensus 40 Lt~L~lL~~LCTiYLYFAVTLGa~~sCsG 68 (94)
+..+++++++.++| .++-..+++|.=
T Consensus 4 l~~i~~l~~~~~l~---~l~~~~~~~C~I 29 (59)
T PF02495_consen 4 LLLIGLLAFLLTLY---LLQSPSSPSCVI 29 (59)
T ss_pred HHHHHHHHHHHHHH---HHccCCCCCcEE
Confidence 34444455554444 444777888864
No 29
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=34.01 E-value=53 Score=21.78 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 034458 45 LLGLLCTIYLYFAVTL 60 (94)
Q Consensus 45 lL~~LCTiYLYFAVTL 60 (94)
+|-..||+-.|+|+.+
T Consensus 11 ~LF~~~T~lfYy~~~w 26 (71)
T PF14004_consen 11 LLFTGCTLLFYYAILW 26 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566899999999865
No 30
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=33.18 E-value=78 Score=25.42 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRF-LLTALVLLGLLCTIYLYFA 57 (94)
Q Consensus 27 gSWstL~~RHrF-LLt~L~lL~~LCTiYLYFA 57 (94)
+-|..| .||++ .+...++.+++..+|.|++
T Consensus 22 ~l~~~L-~r~k~~Ii~~~~~~~~lg~~Ya~~a 52 (325)
T PRK15471 22 DLLVQL-WRGKMTIIISVIVAIALAVGYLAVA 52 (325)
T ss_pred HHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 345554 45555 4555556677888999886
No 31
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=33.18 E-value=82 Score=20.12 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034458 39 LLTALVLLGLLCTIYLYFAV 58 (94)
Q Consensus 39 LLt~L~lL~~LCTiYLYFAV 58 (94)
+|.+++++..+++||.++..
T Consensus 18 ~l~~~v~~~a~~~v~~~~~~ 37 (97)
T PF04999_consen 18 LLVIVVLISALGVVYSRHQS 37 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555556677777653
No 32
>PHA02692 hypothetical protein; Provisional
Probab=33.07 E-value=82 Score=21.30 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFL-LTALVLLGLLCTIYL 54 (94)
Q Consensus 27 gSWstL~~RHrFL-Lt~L~lL~~LCTiYL 54 (94)
-+|.+++ ++ +.+.++++++|..||
T Consensus 43 ~~~~~~i----i~~~~~~~~~vll~flYL 67 (70)
T PHA02692 43 VPWTTVF----LIGLIAAAIGVLLCFHYL 67 (70)
T ss_pred cchHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4677664 23 445566777777665
No 33
>PHA02818 hypothetical protein; Provisional
Probab=32.85 E-value=82 Score=22.38 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 034458 32 LAERHRFLLTALVLLGLLCTIYLYFAVTLG 61 (94)
Q Consensus 32 L~~RHrFLLt~L~lL~~LCTiYLYFAVTLG 61 (94)
++.|.-++|. ..+-.+++||++|..
T Consensus 62 l~kRNy~~L~-----~~~l~~~~y~~~~~~ 86 (92)
T PHA02818 62 LLKRNYKILF-----SILLLSILYDAFTHS 86 (92)
T ss_pred HHHHhHHHHH-----HHHHHHHHHHHHHHH
Confidence 4555555533 222228889999874
No 34
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=31.27 E-value=30 Score=28.42 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.9
Q ss_pred ccccccccccCCHHHHHH
Q 034458 17 FKRQFTKDEFGSWSTLAE 34 (94)
Q Consensus 17 fkrqf~~delgSWstL~~ 34 (94)
.+-.|.|+|+|||.+|.+
T Consensus 262 v~~~~~W~DvGsw~~l~~ 279 (468)
T TIGR01479 262 VPMDAGWSDVGSWSALWE 279 (468)
T ss_pred EeCCCCccccCCHHHHHH
Confidence 355678999999999876
No 35
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=30.22 E-value=68 Score=27.04 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCcccCC
Q 034458 33 AERHRFLLTALVLLGLLCTI------YLYFAVTLGAATSCSGL 69 (94)
Q Consensus 33 ~~RHrFLLt~L~lL~~LCTi------YLYFAVTLGa~~sCsGL 69 (94)
.++.|.++..+.++++++-+ =+|+|+..|.+|-|.-.
T Consensus 231 ~r~Sr~~li~~s~~g~l~l~~~W~~~~~~l~~~v~~sDfC~~p 273 (418)
T cd07912 231 ARHSRCLLIVFSVCGLFALIISWLSLGLYLASAVALSDFCVDP 273 (418)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCH
Confidence 34445444444333333322 35788888899999753
No 36
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=1.4e+02 Score=19.24 Aligned_cols=26 Identities=15% Similarity=0.131 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 28 SWSTLAERHRFLLTALVLLGLLCTIY 53 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~~LCTiY 53 (94)
+|.++..==++..++...+.|+|.||
T Consensus 2 ~~e~~~~~a~a~~t~~~~l~fiavi~ 27 (60)
T COG4736 2 TYEMMRGFADAWGTIAFTLFFIAVIY 27 (60)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666544
No 37
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=28.67 E-value=1.4e+02 Score=22.86 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 28 SWSTLAERHRFLLTALVLLGLLCTIYLYFAV 58 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~~LCTiYLYFAV 58 (94)
-|+.|.+.-++.+.+|++++|+-.|-+|.++
T Consensus 14 ~~~~~~k~~~~~l~~lll~g~~~G~~~~~~~ 44 (200)
T PRK10617 14 LWKWWRTPSRLALGTLLLIGFVGGIIFWGGF 44 (200)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777766666655566666666666666544
No 38
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.31 E-value=1.2e+02 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 034458 32 LAERHRFLLTALVLLGLLCTIYLYFAVTLGAAT 64 (94)
Q Consensus 32 L~~RHrFLLt~L~lL~~LCTiYLYFAVTLGa~~ 64 (94)
+.+|--| |..|++|+|+-.|||---..-|+.|
T Consensus 249 ~~~ra~f-li~lgvLafi~~i~lM~rlGr~g~d 280 (299)
T KOG3970|consen 249 AKKRALF-LIFLGVLAFITIIMLMKRLGRSGED 280 (299)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhcccccc
Confidence 4555544 5568999999998886544444443
No 39
>PHA02975 hypothetical protein; Provisional
Probab=27.24 E-value=82 Score=21.30 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFLLTALVLLGLLCTIYL 54 (94)
Q Consensus 27 gSWstL~~RHrFLLt~L~lL~~LCTiYL 54 (94)
.+|..++ +++.+.++++++|..||
T Consensus 42 ~~~~~~i----i~i~~v~~~~~~~flYL 65 (69)
T PHA02975 42 SLSIILI----IFIIFITCIAVFTFLYL 65 (69)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4566664 45667777788887776
No 40
>COG3771 Predicted membrane protein [Function unknown]
Probab=27.20 E-value=75 Score=22.76 Aligned_cols=9 Identities=67% Similarity=0.837 Sum_probs=8.0
Q ss_pred HHHHhCCCC
Q 034458 56 FAVTLGAAT 64 (94)
Q Consensus 56 FAVTLGa~~ 64 (94)
.|||+||++
T Consensus 16 iavtlGa~N 24 (97)
T COG3771 16 IAVTLGAQN 24 (97)
T ss_pred HHhhccCCC
Confidence 699999987
No 41
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=26.33 E-value=1.2e+02 Score=21.77 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Q 034458 33 AERHRFLLTALVLLGLL-CTIYLYF 56 (94)
Q Consensus 33 ~~RHrFLLt~L~lL~~L-CTiYLYF 56 (94)
+.||.++....++++.+ +.+|.||
T Consensus 17 l~r~~~~ill~~ll~~~~a~~~~~~ 41 (226)
T TIGR01006 17 LWKRKLLILIVALIFLIISFIYTFF 41 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 45666665555444433 3344444
No 42
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=26.02 E-value=22 Score=24.02 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFLLTALVLLGLLCTIYLYF 56 (94)
Q Consensus 27 gSWstL~~RHrFLLt~L~lL~~LCTiYLYF 56 (94)
.-|..|=.|-|-++..++++.++..+|+..
T Consensus 6 ~~w~~ls~REr~ll~~~~~~l~~~l~~~~~ 35 (160)
T PF04612_consen 6 QWWQSLSPRERRLLLVLGVVLLLALLYLLL 35 (160)
T ss_dssp ------------------------------
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999998887777666665543
No 43
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=25.82 E-value=1.3e+02 Score=24.48 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 034458 28 SWSTLAERHRFLL-TALVLLGLLCTIYLYFA 57 (94)
Q Consensus 28 SWstL~~RHrFLL-t~L~lL~~LCTiYLYFA 57 (94)
-|..| .||+++. ...++.+++..+|.|++
T Consensus 32 ll~~L-~r~k~~Il~~~~~~~~~g~~ya~~~ 61 (377)
T PRK10381 32 LISVL-WKAKKTIIAITFAFACAGLLISFIL 61 (377)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35444 5555544 44555556777888765
No 44
>PF01127 Sdh_cyt: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; InterPro: IPR000701 This entry includes the transmembrane subunit from both succinate dehydrogenase and fumarate reductase complexes. Fumarate reductase couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, in a reaction opposite to that catalysed by the related complex II of the respiratory chain (succinate dehydrogenase) []. Three protein subunits contain the fumarate reductase complex. Subunit A contains the site of fumarate reduction and a covalently bound flavin adenine dinucleotide prosthetic group. Subunit B contains three iron-sulphur centres. The menaquinol-oxidizing subunit C consists of five membrane-spanning, primarily helical segments and binds two haem b molecules []. Succinate dehydrogenase (SDH) is a membrane-bound complex of two main components: a membrane-extrinsic component composed of an FAD-binding flavoprotein and an iron-sulphur protein, and a hydrophobic component composed of a cytochrome b and a membrane anchor protein. The cytochrome b component is a mono-haem transmembrane protein [, , ] belonging to a family that includes: Cytochrome b-556 from bacterial SDH (gene sdhC). Cytochrome b560 from the mammalian mitochondrial SDH complex, which is encoded in the mitochondrial genome of some algae and in the plant Marchantia polymorpha. Cytochrome b from yeast mitochondrial SDH complex (gene SDH3 or CYB3). Protein cyt-1 from Caenorhabditis elegans. These cytochromes are proteins of about 130 residues that comprise three transmembrane regions. There are two conserved histidines which may be involved in binding the haem group.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors; PDB: 2WDQ_H 1NEN_D 2WP9_L 2WDV_H 2ACZ_D 2WS3_L 2WU2_H 2WDR_D 2WU5_H 1NEK_D ....
Probab=25.69 E-value=1.4e+02 Score=19.02 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=18.8
Q ss_pred CCCCcccccccccccCCHHHHHHHHHHHHHHHHHHH
Q 034458 12 RRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLG 47 (94)
Q Consensus 12 rrs~sfkrqf~~delgSWstL~~RHrFLLt~L~lL~ 47 (94)
+|+-+++++.-+...|+|..+.|| .|+++++.
T Consensus 4 ~r~~~p~~~~~~~~~~~~~~~~qR----iTgi~L~~ 35 (121)
T PF01127_consen 4 NRPRSPHRGIYRFHSGTWAWILQR----ITGIILLL 35 (121)
T ss_dssp T--BHHCTTTST--HHHHHHHHHH----HHHHHHHH
T ss_pred CCCCCcccceecCCcchHHHHHHH----HHHHHHHH
Confidence 455556666655557899999988 35555554
No 45
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=25.25 E-value=76 Score=17.57 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034458 29 WSTLAERHRFLLTALVLLGLL 49 (94)
Q Consensus 29 WstL~~RHrFLLt~L~lL~~L 49 (94)
|..|=+.||-.+.+++.+.++
T Consensus 3 ~~~LP~~Hr~~l~~l~~v~l~ 23 (30)
T PF08525_consen 3 FNPLPKLHRRALIALSAVVLV 23 (30)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 556667899999988888776
No 46
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=25.07 E-value=39 Score=27.48 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=23.1
Q ss_pred hCCCCcccCCcccchhhhhhHHHHhhhh
Q 034458 60 LGAATSCSGLIGTEKALCHLEQAKASVA 87 (94)
Q Consensus 60 LGa~~sCsGLtG~~k~~C~me~~k~s~~ 87 (94)
+|+||+|.-=++..+..|-++.-++-++
T Consensus 76 fGaNDs~l~~~~~~~~hvPl~Ey~dNlr 103 (245)
T KOG3035|consen 76 FGANDSCLPEPSSLGQHVPLEEYKDNLR 103 (245)
T ss_pred ecCccccCCCCCCCCCccCHHHHHHHHH
Confidence 7999999999988888998886665543
No 47
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=24.89 E-value=24 Score=25.73 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 034458 36 HRFLLTALVLLGLLCTIYLYFAVTL 60 (94)
Q Consensus 36 HrFLLt~L~lL~~LCTiYLYFAVTL 60 (94)
-+++++||+|+.++. +||-+..+-
T Consensus 2 ~~~li~~L~l~ivla-~ylny~~~~ 25 (196)
T PF12685_consen 2 TQWLITMLVLMIVLA-GYLNYQFNP 25 (196)
T ss_dssp -------------------------
T ss_pred ceehHHHHHHHHHHH-hhhhhhcCc
Confidence 367888888776654 554444443
No 48
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=24.38 E-value=1.2e+02 Score=20.96 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 034458 40 LTALVLLGLLCTIYLYFAVTLG 61 (94)
Q Consensus 40 Lt~L~lL~~LCTiYLYFAVTLG 61 (94)
|-..++|++|+.+|.+|-..|-
T Consensus 53 l~l~ail~lL~a~Ya~fyl~ls 74 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNLS 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3356778888899988876553
No 49
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=23.88 E-value=1.4e+02 Score=21.46 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 29 WSTLAERHRFLLTALVLLGLLCTIYLY 55 (94)
Q Consensus 29 WstL~~RHrFLLt~L~lL~~LCTiYLY 55 (94)
......|+.-++..++|++.|-.||.+
T Consensus 67 ~~~~~~r~~~~~pl~aLv~gL~~i~~~ 93 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVAGLAGINYW 93 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888888876
No 50
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=23.87 E-value=1.6e+02 Score=18.69 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 28 SWSTLAERHRFLLTALVLLGLLCTIYLYF 56 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~~LCTiYLYF 56 (94)
.|++.+.+.-+-+...+++.++-+|++.|
T Consensus 63 ~~~~~~~~~~~~~ll~~~ll~l~~iil~f 91 (92)
T PF13038_consen 63 KEKYRVSRWTYPLLLIGLLLILLSIILSF 91 (92)
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666555443333333444444454443
No 51
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=23.45 E-value=1.1e+02 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034458 35 RHRFLLTALVLLGLLCTIYLYFA 57 (94)
Q Consensus 35 RHrFLLt~L~lL~~LCTiYLYFA 57 (94)
||.+++.+++++.++..+|++|+
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~ 40 (421)
T TIGR03794 18 RSWLALAALGVIVVAALAWGIFG 40 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666655555556666654
No 52
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=23.40 E-value=1e+02 Score=21.32 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034458 37 RFLLTALVLLGLLCTIYLYFAV 58 (94)
Q Consensus 37 rFLLt~L~lL~~LCTiYLYFAV 58 (94)
+++=..-.++.+=|||-||+|-
T Consensus 47 tvle~va~l~~IPgtIiLY~aY 68 (78)
T PHA02702 47 TVLDFVSLLTTIPCTIILYFLC 68 (78)
T ss_pred HHHHHHHHHHHhchHHHHHHHH
Confidence 3444444556667999999985
No 53
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=23.27 E-value=1.7e+02 Score=21.86 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=29.7
Q ss_pred CcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 034458 15 SSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAAT 64 (94)
Q Consensus 15 ~sfkrqf~~delgSWstL~~RHrFLLt~L~lL~~LCTiYLYFAVTLGa~~ 64 (94)
..+.++||-||.|. ++..+..+++-.++..+|.+.+..+-.++
T Consensus 15 ~~~~~hfS~de~gi-------~~~~~~~~~~y~vl~~~~~~~~~~l~~~~ 57 (257)
T PF10192_consen 15 DFWTSHFSADEQGI-------LEIYLLFLLLYIVLSIISIYSIQSLKKRG 57 (257)
T ss_pred CccccccChhhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999764 44555566667777777777776664444
No 54
>PRK14889 VKOR family protein; Provisional
Probab=23.23 E-value=2.8e+02 Score=19.61 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCcccCCcccchhhhh
Q 034458 34 ERHRFLLTALVLLGLLCTIYLYFAV--TLGAATSCSGLIGTEKALCH 78 (94)
Q Consensus 34 ~RHrFLLt~L~lL~~LCTiYLYFAV--TLGa~~sCsGLtG~~k~~C~ 78 (94)
.+-++++..+.+++++-++|+|..- ..+.+-.|+. ....+|.
T Consensus 6 ~~~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~---~~~~~C~ 49 (143)
T PRK14889 6 NGILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTI---NSVINCS 49 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC---CCCCCHH
Confidence 3456688889999999999998755 3355568983 2234676
No 55
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=22.95 E-value=1.9e+02 Score=20.75 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAERHRFLLTALVLLGLLCTIY 53 (94)
Q Consensus 27 gSWstL~~RHrFLLt~L~lL~~LCTiY 53 (94)
+.|+.+...-++|+..++++++.+.+-
T Consensus 8 ~~~~~~~~~~~~l~~~~~~l~~~~v~l 34 (187)
T PF05309_consen 8 SRLKQLSKQNNLLLLLLLVLLIANVVL 34 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777666666666665544444
No 56
>PHA03164 hypothetical protein; Provisional
Probab=22.54 E-value=73 Score=22.45 Aligned_cols=50 Identities=32% Similarity=0.642 Sum_probs=27.7
Q ss_pred CccccccCCCCCCC-Ccc-----cccccccccCCHHHHHHHHH---HH-HHHHHHHHHHHHHHH
Q 034458 1 MVLETVLSSPHRRS-SSF-----KRQFTKDEFGSWSTLAERHR---FL-LTALVLLGLLCTIYL 54 (94)
Q Consensus 1 MVldsi~sSp~rrs-~sf-----krqf~~delgSWstL~~RHr---FL-Lt~L~lL~~LCTiYL 54 (94)
||.|.- -|||--. .|| -+|.++ .+|+-.-+|-+ || |+-|++-.+||.|+.
T Consensus 18 dvm~gq-VspH~~NdtsfveclpPpqisr---tawnlwnnrRktftFlvLtgLaIamILfiifv 77 (88)
T PHA03164 18 DVMDGQ-VSPHQENDTSFVECLPPPQISR---TAWNLWNNRRKTFTFLVLTGLAIAMILFIIFV 77 (88)
T ss_pred HHHccc-cccccccCcccceecCCcccCc---hhHHHHHhhhheeehHHHHHHHHHHHHHHHHH
Confidence 345555 4676432 333 233333 56776665544 43 666777777887764
No 57
>PRK10040 hypothetical protein; Provisional
Probab=22.26 E-value=1.2e+02 Score=19.65 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.6
Q ss_pred HhCCCCcccCCccc
Q 034458 59 TLGAATSCSGLIGT 72 (94)
Q Consensus 59 TLGa~~sCsGLtG~ 72 (94)
...++.-|||--|-
T Consensus 14 a~a~n~PCSG~KGG 27 (52)
T PRK10040 14 ADAGNKPCSGKKGG 27 (52)
T ss_pred HHhcCCCCCCCCCC
Confidence 45678899997763
No 58
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=22.10 E-value=1.3e+02 Score=20.35 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034458 37 RFLLTALVLLGLLCTIYLYFAV 58 (94)
Q Consensus 37 rFLLt~L~lL~~LCTiYLYFAV 58 (94)
+.....++++..+..+++|+.+
T Consensus 93 ~~~~~~~~~~lp~~a~~lY~~l 114 (117)
T TIGR03142 93 RLAALVVVLLLPVLALGLYLKL 114 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556667778899999853
No 59
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.07 E-value=1.5e+02 Score=25.65 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 034458 28 SWSTLAERHRFLLTALVLLG-LLCTIYLYFA 57 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~-~LCTiYLYFA 57 (94)
-|..|. ||+++..+.++++ .+..+|++++
T Consensus 23 l~~~l~-r~~~~i~~~~~~~~~~a~~y~~~~ 52 (726)
T PRK09841 23 LVGELW-DHRKFIISVTALFTLIAVAYSLLS 52 (726)
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHHHHhC
Confidence 455544 6665554444443 3445555543
No 60
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.93 E-value=1e+02 Score=23.31 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034458 36 HRFLLTALVLLGLLCTIYLYFA 57 (94)
Q Consensus 36 HrFLLt~L~lL~~LCTiYLYFA 57 (94)
.|+.+..++++.+...+++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (423)
T TIGR01843 4 ARLITWLIAGLVVIFFLWAYFA 25 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHhhe
Confidence 3566666666666667777774
No 61
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=21.67 E-value=2.5e+02 Score=18.46 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 32 LAERHRFLLTALVLLGLLCTIYLYFAVT 59 (94)
Q Consensus 32 L~~RHrFLLt~L~lL~~LCTiYLYFAVT 59 (94)
|..|=++=+..-.++.+.++...||.|+
T Consensus 13 l~~~l~~~i~~a~~ls~~~~~~~kf~v~ 40 (73)
T PF02937_consen 13 LAKRLKRHIVVAFVLSLGVAAAYKFGVA 40 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666677788888898875
No 62
>COG2148 WcaJ Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]
Probab=21.52 E-value=2.7e+02 Score=22.02 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=31.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 24 DEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVT 59 (94)
Q Consensus 24 delgSWstL~~RHrFLLt~L~lL~~LCTiYLYFAVT 59 (94)
.....|...++|=-=+..+++.|.++|-++|..|+-
T Consensus 31 ~~~~~~~~~~KR~~Di~~s~~~L~v~sP~~l~iai~ 66 (226)
T COG2148 31 QLLVKPASVLKRLFDIVLALIGLLLLSPVMLIIALA 66 (226)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999998999999999999998877654
No 63
>TIGR02970 succ_dehyd_cytB succinate dehydrogenase, cytochrome b556 subunit. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhC, the cytochrome b subunit, called b556 in bacteria and b560 in mitochondria. SdhD (see TIGR02968) is called the hydrophobic membrane anchor subunit, although both SdhC and SdhD participate in anchoring the complex. In some bacteria, this cytochrome b subunit is replaced my a member of the cytochrome b558 family (see TIGR02046).
Probab=21.16 E-value=1.9e+02 Score=19.48 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=14.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHH
Q 034458 23 KDEFGSWSTLAERHRFLLTALVLLGLL 49 (94)
Q Consensus 23 ~delgSWstL~~RHrFLLt~L~lL~~L 49 (94)
|-..++|..+.+| .|..++..++
T Consensus 13 r~~~~~~~silhR----iTGv~l~~~~ 35 (120)
T TIGR02970 13 RFPITAILSILHR----ITGVLLFFGL 35 (120)
T ss_pred cccHHHHHHHHHH----HHHHHHHHHH
Confidence 3456899999988 4555444433
No 64
>PF10968 DUF2770: Protein of unknown function (DUF2770); InterPro: IPR024494 Members in this family of proteins from Enterobacteria are annotated as YceO; however, currently no function is known.
Probab=20.18 E-value=1.6e+02 Score=17.84 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=13.3
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHH
Q 034458 35 RHRFLLTAL--VLLGLLCTIYLYF 56 (94)
Q Consensus 35 RHrFLLt~L--~lL~~LCTiYLYF 56 (94)
|+-|+|... .+|+.+=.+|++|
T Consensus 13 ReHlmlYi~Lw~lL~~~D~~y~~f 36 (36)
T PF10968_consen 13 REHLMLYICLWLLLAALDLYYLFF 36 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 555555443 4566677777775
No 65
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=20.15 E-value=1.9e+02 Score=21.11 Aligned_cols=30 Identities=40% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 034458 33 AERHRFLLTALVLLGLLCTIYLYFAVTLGA 62 (94)
Q Consensus 33 ~~RHrFLLt~L~lL~~LCTiYLYFAVTLGa 62 (94)
-+|+.+++.++..+++..+.=+||=--+|-
T Consensus 10 ~~r~~~ll~~~~~~~~~~~~al~fq~i~g~ 39 (170)
T COG1495 10 FSRLLWLLLALLGLALALLAALYFQYILGL 39 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 468888888888888888887888766553
No 66
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=20.10 E-value=1.3e+02 Score=20.37 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034458 38 FLLTALVLLGLLCTIYL 54 (94)
Q Consensus 38 FLLt~L~lL~~LCTiYL 54 (94)
+.+.+.+++.+||..||
T Consensus 53 i~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 53 ISIIFVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555556666655554
Done!