Query 034458
Match_columns 94
No_of_seqs 19 out of 21
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 04:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034458.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034458hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 41.6 12 0.00089 23.8 3.4 28 27-56 220-250 (260)
2 d1oedb_ f.36.1.1 (B:) Acetylch 30.9 26 0.0019 22.2 3.7 32 27-58 210-242 (250)
3 d2cu2a2 c.68.1.20 (A:1-268) Pu 25.5 9.5 0.00069 25.4 0.7 16 19-34 249-264 (268)
4 d1v7mv_ a.26.1.2 (V:) Thrombop 23.5 15 0.0011 24.8 1.5 28 67-94 109-136 (145)
5 d1ppjd2 f.23.11.1 (D:196-241) 21.3 63 0.0046 17.5 3.8 23 33-55 4-26 (46)
6 d1oede_ f.36.1.1 (E:) Acetylch 17.1 90 0.0066 19.6 4.3 27 27-55 220-249 (260)
7 d3cx5d2 f.23.11.1 (D:261-307) 16.7 86 0.0063 17.2 4.0 22 34-55 5-26 (47)
8 d2ev0a2 a.76.1.1 (A:63-136) Ma 16.6 29 0.0021 19.7 1.5 37 30-85 9-45 (74)
9 d2isya2 a.76.1.1 (A:65-140) Ir 15.6 54 0.004 18.5 2.6 37 30-84 9-45 (76)
10 d1f5ta2 a.76.1.1 (A:1065-1121) 12.3 82 0.006 16.7 2.6 37 31-85 10-46 (57)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=41.61 E-value=12 Score=23.80 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=14.5
Q ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTL---AERHRFLLTALVLLGLLCTIYLYF 56 (94)
Q Consensus 27 gSWstL---~~RHrFLLt~L~lL~~LCTiYLYF 56 (94)
+.|.-+ +.| +.+.+.++..+++||++|+
T Consensus 220 ~EWk~vA~ViDR--lfl~lF~i~~vi~ti~ifl 250 (260)
T d1oedc_ 220 GNWNLVGQTIDR--LSMFIITPVMVLGTIFIFV 250 (260)
T ss_dssp ------CCSHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 568777 554 6666666666777887754
No 2
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=30.91 E-value=26 Score=22.25 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=18.4
Q ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTLAER-HRFLLTALVLLGLLCTIYLYFAV 58 (94)
Q Consensus 27 gSWstL~~R-HrFLLt~L~lL~~LCTiYLYFAV 58 (94)
..|..++.. =|+++....++.+++|+++.+.+
T Consensus 210 ~EW~~vA~VlDRlfl~lF~l~~vi~t~~i~l~a 242 (250)
T d1oedb_ 210 KDWQYVAMVADRLFLYVFFVICSIGTFSIFLDA 242 (250)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 458766433 25777777778888899888765
No 3
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}
Probab=25.50 E-value=9.5 Score=25.39 Aligned_cols=16 Identities=31% Similarity=0.794 Sum_probs=12.8
Q ss_pred ccccccccCCHHHHHH
Q 034458 19 RQFTKDEFGSWSTLAE 34 (94)
Q Consensus 19 rqf~~delgSWstL~~ 34 (94)
-.+.|.|.|||.+|.+
T Consensus 249 ~d~~W~DvGtw~s~~~ 264 (268)
T d2cu2a2 249 GRFPWDDVGNWRALER 264 (268)
T ss_dssp ECSCEECCCSTTHHHH
T ss_pred cCCCcCCCcCHHHHHH
Confidence 3457899999999864
No 4
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.49 E-value=15 Score=24.83 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=25.7
Q ss_pred cCCcccchhhhhhHHHHhhhhccccccC
Q 034458 67 SGLIGTEKALCHLEQAKASVAKGKLKFL 94 (94)
Q Consensus 67 sGLtG~~k~~C~me~~k~s~~~gKLKf~ 94 (94)
++-|.+++..|.+-.+-..+=.||+|||
T Consensus 109 ~~~t~~~~~~~~Lf~v~~nfLRGKvrll 136 (145)
T d1v7mv_ 109 QGRTTAHKDPNAIFLSFQHLLRGKVRFL 136 (145)
T ss_dssp CSCEEEESCGGGHHHHHHHHHHTTTGGG
T ss_pred CCCchhhccHHHHHHHHHHHHhhhHhhh
Confidence 6788899999999999999999999986
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.27 E-value=63 Score=17.51 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034458 33 AERHRFLLTALVLLGLLCTIYLY 55 (94)
Q Consensus 33 ~~RHrFLLt~L~lL~~LCTiYLY 55 (94)
=+|.+.-+.+++.|.++..+-.|
T Consensus 4 d~RK~mG~Kv~~~l~~l~~l~yy 26 (46)
T d1ppjd2 4 DHRKRMGLKMLLMMGLLLPLVYA 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888887665444
No 6
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=17.08 E-value=90 Score=19.62 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=9.8
Q ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 034458 27 GSWSTL---AERHRFLLTALVLLGLLCTIYLY 55 (94)
Q Consensus 27 gSWstL---~~RHrFLLt~L~lL~~LCTiYLY 55 (94)
..|..+ +.|--|.+..++ .++.|+.+|
T Consensus 220 ~eW~~vA~viDR~~l~vF~~~--~~i~t~~i~ 249 (260)
T d1oede_ 220 ENWVLIGKVIDKACFWIALLL--FSIGTLAIF 249 (260)
T ss_dssp ------CCHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 458776 556555444443 334444443
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.67 E-value=86 Score=17.20 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034458 34 ERHRFLLTALVLLGLLCTIYLY 55 (94)
Q Consensus 34 ~RHrFLLt~L~lL~~LCTiYLY 55 (94)
+|-+.-+.+++++.+|..+-.|
T Consensus 5 eRK~mg~K~~~i~s~l~~~~~y 26 (47)
T d3cx5d2 5 ERKRLGLKTVIILSSLYLLSIW 26 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888898888887766555
No 8
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=16.58 E-value=29 Score=19.67 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcccchhhhhhHHHHhh
Q 034458 30 STLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKAS 85 (94)
Q Consensus 30 stL~~RHrFLLt~L~lL~~LCTiYLYFAVTLGa~~sCsGLtG~~k~~C~me~~k~s 85 (94)
..+++|||.+=..| ..||-+. .-++...|.|||+-+.
T Consensus 9 ~~i~rrHrlle~fL--------------~~lg~~~-----~~a~~~A~~iEH~is~ 45 (74)
T d2ev0a2 9 KRLVYRHELLEQFL--------------RIIGVDE-----EKIYNDVEGIEHHLSW 45 (74)
T ss_dssp HHHHHHHHHHHHHH--------------HHTTCCH-----HHHHHHHHHHGGGCCH
T ss_pred HHHHHHHHHHHHHH--------------HHcCCCh-----hHHHHHHHHHHhcCCH
Confidence 35789999765432 2344432 1246788999987543
No 9
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.64 E-value=54 Score=18.54 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcccchhhhhhHHHHh
Q 034458 30 STLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKA 84 (94)
Q Consensus 30 stL~~RHrFLLt~L~lL~~LCTiYLYFAVTLGa~~sCsGLtG~~k~~C~me~~k~ 84 (94)
..+++|||.|-..|+ =.||-+. .-+...-|+|||+-+
T Consensus 9 ~~i~rrHrlle~fL~-------------~~lgv~~-----~~a~~~A~~iEH~is 45 (76)
T d2isya2 9 IAVMRKHRLAERLLV-------------DVIGLPW-----EEVHAEACRWEHVMS 45 (76)
T ss_dssp HHHHHHHHHHHHHHH-------------HTTCCCH-----HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHH-------------HHcCCCH-----HHHHHHHHHHhccCC
Confidence 468899997654332 1233221 134678899998754
No 10
>d1f5ta2 a.76.1.1 (A:1065-1121) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=12.28 E-value=82 Score=16.71 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcccchhhhhhHHHHhh
Q 034458 31 TLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKAS 85 (94)
Q Consensus 31 tL~~RHrFLLt~L~lL~~LCTiYLYFAVTLGa~~sCsGLtG~~k~~C~me~~k~s 85 (94)
.+++|||.+-..|+ =-||-+ ..-++..-|.|||+-+.
T Consensus 10 ~i~rrHrlle~fL~-------------~~lgv~-----~~~a~~~A~~iEH~ls~ 46 (57)
T d1f5ta2 10 AVMRKHRLAERLLT-------------DIIGLD-----INKVHDEADRWEHVMSD 46 (57)
T ss_dssp HHHHHHHHHHHHHH-------------TTSCCC-----GGGHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHH-------------HhhCCC-----HHHHHHHHHHHHccCCH
Confidence 57899997654332 122322 12345788999987543
Done!