BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034460
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BQ4|A Chain A, Crystal Structure Of Type I Cytochrome C3 From
Desulfovibrio Africanus
pdb|2BQ4|B Chain B, Crystal Structure Of Type I Cytochrome C3 From
Desulfovibrio Africanus
Length = 116
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 11 DSVNVSVGEKEERLMMTGMHTVADIFCVGC 40
D+ + EK+ + +MT H+ + + C GC
Sbjct: 64 DTTSFKATEKDPKFLMTAFHSKSPMSCQGC 93
>pdb|1DF8|A Chain A, S45a Mutant Of Streptavidin In Complex With Biotin
pdb|1DF8|B Chain B, S45a Mutant Of Streptavidin In Complex With Biotin
pdb|1LUQ|A Chain A, Full Matrix Error Analysis Of Streptavidin
pdb|1LUQ|B Chain B, Full Matrix Error Analysis Of Streptavidin
Length = 127
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYEAAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|3T6F|A Chain A, Biotin Complex Of Y54f Core Streptavidin
pdb|3T6F|B Chain B, Biotin Complex Of Y54f Core Streptavidin
pdb|3T6L|A Chain A, Y54f Mutant Of Core Streptavidin
Length = 127
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRFVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1MEP|A Chain A, Crystal Structure Of Streptavidin Double Mutant S45aD128A
With Biotin: Cooperative Hydrogen-Bond Interactions In
The Streptavidin-Biotin System.
pdb|1MEP|B Chain B, Crystal Structure Of Streptavidin Double Mutant S45aD128A
With Biotin: Cooperative Hydrogen-Bond Interactions In
The Streptavidin-Biotin System.
pdb|1MEP|C Chain C, Crystal Structure Of Streptavidin Double Mutant S45aD128A
With Biotin: Cooperative Hydrogen-Bond Interactions In
The Streptavidin-Biotin System.
pdb|1MEP|D Chain D, Crystal Structure Of Streptavidin Double Mutant S45aD128A
With Biotin: Cooperative Hydrogen-Bond Interactions In
The Streptavidin-Biotin System
Length = 127
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYEAAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1MOY|A Chain A, Streptavidin Mutant With Osteopontin Hexapeptide
Insertion Including Rgd
Length = 130
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIF--CVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A VG G+ +GW Y AH +
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPGRGDSVGSGTALGWTVAWKNNYRNAHSAT 81
>pdb|1NBX|A Chain A, Streptavidin Mutant Y43a At 1.70a Resolution
pdb|1NBX|B Chain B, Streptavidin Mutant Y43a At 1.70a Resolution
pdb|1NBX|C Chain C, Streptavidin Mutant Y43a At 1.70a Resolution
pdb|1NBX|D Chain D, Streptavidin Mutant Y43a At 1.70a Resolution
pdb|1NC9|A Chain A, Streptavidin Mutant Y43a With Iminobiotin At 1.8a
Resolution
pdb|1NC9|B Chain B, Streptavidin Mutant Y43a With Iminobiotin At 1.8a
Resolution
pdb|1NC9|C Chain C, Streptavidin Mutant Y43a With Iminobiotin At 1.8a
Resolution
pdb|1NC9|D Chain D, Streptavidin Mutant Y43a With Iminobiotin At 1.8a
Resolution
Length = 127
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTAESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1SWU|A Chain A, Streptavidin Mutant Y43f
pdb|1SWU|B Chain B, Streptavidin Mutant Y43f
pdb|1SWU|C Chain C, Streptavidin Mutant Y43f
pdb|1SWU|D Chain D, Streptavidin Mutant Y43f
pdb|1NDJ|A Chain A, Streptavidin Mutant Y43f With Biotin At 1.81a Resolution
pdb|1NDJ|B Chain B, Streptavidin Mutant Y43f With Biotin At 1.81a Resolution
pdb|1NDJ|C Chain C, Streptavidin Mutant Y43f With Biotin At 1.81a Resolution
pdb|1NDJ|D Chain D, Streptavidin Mutant Y43f With Biotin At 1.81a Resolution
Length = 127
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTFESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1STP|A Chain A, Structural Origins Of High-Affinity Biotin Binding To
Streptavidin
Length = 159
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 90
>pdb|4EKV|A Chain A, Streptavidin 8-Aa-Loop H127c Mutein With Reversible
Biotin Binding
Length = 159
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 90
>pdb|1SWH|A Chain A, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWH|B Chain B, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWH|C Chain C, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWH|D Chain D, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWJ|A Chain A, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWJ|B Chain B, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWJ|C Chain C, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWJ|D Chain D, Core-Streptavidin Mutant W79f At Ph 4.5
pdb|1SWK|A Chain A, Core-streptavidin Mutant W79f In Complex With Biotin At Ph
4.5
pdb|1SWK|B Chain B, Core-streptavidin Mutant W79f In Complex With Biotin At Ph
4.5
pdb|1SWK|C Chain C, Core-streptavidin Mutant W79f In Complex With Biotin At Ph
4.5
pdb|1SWK|D Chain D, Core-streptavidin Mutant W79f In Complex With Biotin At Ph
4.5
Length = 127
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAFKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1NQM|A Chain A, Structure Of Savm-W120k, Streptavidin Mutant
pdb|1NQM|B Chain B, Structure Of Savm-W120k, Streptavidin Mutant
pdb|1NQM|C Chain C, Structure Of Savm-W120k, Streptavidin Mutant
pdb|1NQM|D Chain D, Structure Of Savm-W120k, Streptavidin Mutant
Length = 136
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 39 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 91
>pdb|1SLD|B Chain B, Streptavidin, Ph 7.5, Bound To Cyclic Disulfide-Bonded
Peptide Ligand Ac-Chpqfc-Nh2
pdb|1SLE|B Chain B, Streptavidin, Ph 5.0, Bound To Cyclic Peptide
Ac-Chpqgppc- Nh2
pdb|1SLE|D Chain D, Streptavidin, Ph 5.0, Bound To Cyclic Peptide
Ac-Chpqgppc- Nh2
pdb|1SLF|B Chain B, Apostreptavidin, Ph 5.6, Two Molecules Of (So4)2 Bound
At The Biotin Binding Site
pdb|1SLF|D Chain D, Apostreptavidin, Ph 5.6, Two Molecules Of (So4)2 Bound
At The Biotin Binding Site
pdb|1SLG|B Chain B, Streptavidin, Ph 5.6, Bound To Peptide Fchpqnt
pdb|1SLG|D Chain D, Streptavidin, Ph 5.6, Bound To Peptide Fchpqnt
pdb|2RTN|B Chain B, Streptavidin-2-Iminobiotin Complex, Ph 2.0, Space Group
I222
pdb|2RTN|D Chain D, Streptavidin-2-Iminobiotin Complex, Ph 2.0, Space Group
I222
pdb|2RTO|D Chain D, Streptavidin-2-Iminobiotin Complex, Ph 2.6, Space Group
I222
pdb|2RTP|D Chain D, Streptavidin-2-Iminobiotin Complex, Ph 3.25, Space Group
I222
pdb|2RTQ|D Chain D, Streptavidin-2-Iminobiotin Complex, Ph 3.25, Space Group
I222, Crystallized From 4.3 M Ammonium Sulfate
pdb|2RTR|B Chain B, Streptavidin-2-Iminobiotin Complex, Ph 4.0, Space Group
I222
pdb|2RTR|D Chain D, Streptavidin-2-Iminobiotin Complex, Ph 4.0, Space Group
I222
pdb|2RTG|D Chain D, Streptavidin-Biotin Complex, Ph 2.40, Space Group I222
pdb|2RTH|D Chain D, Streptavidin-Glycoluril Complex, Ph 2.50, Space Group
I222
pdb|2RTI|D Chain D, Streptavidin-Glycoluril Complex, Ph 2.50, Space Group
I222
pdb|2RTB|D Chain D, Apostreptavidin, Ph 3.32, Space Group I222
pdb|2RTC|D Chain D, Apostreptavidin, Ph 3.60, Space Group I222
pdb|2RTD|D Chain D, Streptavidin-Biotin Complex, Ph 1.39, Space Group I222
pdb|2RTE|D Chain D, Streptavidin-Biotin Complex, Ph 1.90, Space Group I222
pdb|2RTF|D Chain D, Streptavidin-Biotin Complex, Ph 2.00, Space Group I222
pdb|1LCZ|A Chain A, Streptavidin-Bcap Complex
pdb|1LCZ|B Chain B, Streptavidin-Bcap Complex
pdb|2RTA|A Chain A, Apostreptavidin, Ph 2.97, Space Group I4122
pdb|2RTB|B Chain B, Apostreptavidin, Ph 3.32, Space Group I222
pdb|2RTC|B Chain B, Apostreptavidin, Ph 3.60, Space Group I222
pdb|2RTD|B Chain B, Streptavidin-Biotin Complex, Ph 1.39, Space Group I222
pdb|2RTE|B Chain B, Streptavidin-Biotin Complex, Ph 1.90, Space Group I222
pdb|2RTF|B Chain B, Streptavidin-Biotin Complex, Ph 2.00, Space Group I222
pdb|2RTG|B Chain B, Streptavidin-Biotin Complex, Ph 2.40, Space Group I222
pdb|2RTH|B Chain B, Streptavidin-Glycoluril Complex, Ph 2.50, Space Group
I222
pdb|2RTI|B Chain B, Streptavidin-Glycoluril Complex, Ph 2.50, Space Group
I222
pdb|2RTJ|A Chain A, Streptavidin-Glycoluril Complex, Ph 2.50, Space Group
I4122
pdb|2RTK|A Chain A, Streptavidin-Glycoluril Complex, Ph 2.58, Space Group
I4122 Prepared From An Apostreptavidin Crystal
pdb|2RTL|A Chain A, Streptavidin-2-Iminobiotin-Sulfate Complex, Ph 2.50,
Space Group I4122
pdb|2RTM|A Chain A, Streptavidin-2-Iminobiotin-Sulfate Complex, Ph 3.50,
Space Group I4122
pdb|2RTO|B Chain B, Streptavidin-2-Iminobiotin Complex, Ph 2.6, Space Group
I222
pdb|2RTP|B Chain B, Streptavidin-2-Iminobiotin Complex, Ph 3.25, Space Group
I222
pdb|2RTQ|B Chain B, Streptavidin-2-Iminobiotin Complex, Ph 3.25, Space Group
I222, Crystallized From 4.3 M Ammonium Sulfate
Length = 135
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 90
>pdb|1I9H|A Chain A, Core Streptavidin-Bna Complex
pdb|1I9H|B Chain B, Core Streptavidin-Bna Complex
Length = 139
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 90
>pdb|2BC3|A Chain A, T7-Tagged Full-Length Streptavidin
pdb|2BC3|B Chain B, T7-Tagged Full-Length Streptavidin
pdb|2WPU|A Chain A, Chaperoned Ruthenium Metallodrugs That Recognize Telomeric
Dna
Length = 159
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 96
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 97 VGGAEARINTQWLLTSGTTEANAWKS 122
>pdb|1SWL|A Chain A, Core-Streptavidin Mutant W108f At Ph 7.0
pdb|1SWL|B Chain B, Core-Streptavidin Mutant W108f At Ph 7.0
pdb|1SWL|C Chain C, Core-Streptavidin Mutant W108f At Ph 7.0
pdb|1SWL|D Chain D, Core-Streptavidin Mutant W108f At Ph 7.0
pdb|1SWN|A Chain A, Core-streptavidin Mutant W108f In Complex With Biotin At
Ph 7.0
pdb|1SWN|B Chain B, Core-streptavidin Mutant W108f In Complex With Biotin At
Ph 7.0
pdb|1SWN|C Chain C, Core-streptavidin Mutant W108f In Complex With Biotin At
Ph 7.0
pdb|1SWN|D Chain D, Core-streptavidin Mutant W108f In Complex With Biotin At
Ph 7.0
Length = 127
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQFLLTSGTTEANAWKS 110
>pdb|4GJS|A Chain A, Streptavidin-k121h
pdb|4GJS|B Chain B, Streptavidin-k121h
Length = 159
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 96
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVSHEAHVG 87
E + + SG +N W H VG
Sbjct: 97 VGGAEARINTQWLLTSGTTEANAW--HSTLVG 126
>pdb|2QCB|A Chain A, T7-Tagged Full-Length Streptavidin Complexed With
Ruthenium Ligand
Length = 159
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 90
>pdb|1N9M|A Chain A, Streptavidin Mutant S27a With Biotin At 1.6a Resolution
pdb|1N9M|B Chain B, Streptavidin Mutant S27a With Biotin At 1.6a Resolution
pdb|1N9M|C Chain C, Streptavidin Mutant S27a With Biotin At 1.6a Resolution
pdb|1N9M|D Chain D, Streptavidin Mutant S27a With Biotin At 1.6a Resolution
pdb|1N9Y|A Chain A, Streptavidin Mutant S27a At 1.5a Resolution
pdb|1N9Y|B Chain B, Streptavidin Mutant S27a At 1.5a Resolution
pdb|1N9Y|C Chain C, Streptavidin Mutant S27a At 1.5a Resolution
pdb|1N9Y|D Chain D, Streptavidin Mutant S27a At 1.5a Resolution
Length = 127
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1SWO|A Chain A, Core-Streptavidin Mutant W120f At Ph 7.5
pdb|1SWO|B Chain B, Core-Streptavidin Mutant W120f At Ph 7.5
pdb|1SWO|C Chain C, Core-Streptavidin Mutant W120f At Ph 7.5
pdb|1SWO|D Chain D, Core-Streptavidin Mutant W120f At Ph 7.5
pdb|1SWP|A Chain A, Core-Streptavidin Mutant W120f In Complex With Biotin At
Ph 7.5
pdb|1SWP|B Chain B, Core-Streptavidin Mutant W120f In Complex With Biotin At
Ph 7.5
pdb|1SWP|C Chain C, Core-Streptavidin Mutant W120f In Complex With Biotin At
Ph 7.5
pdb|1SWP|D Chain D, Core-Streptavidin Mutant W120f In Complex With Biotin At
Ph 7.5
Length = 127
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 78
>pdb|3PK2|A Chain A, Artificial Transfer Hydrogenases For The
Enantioselective Reduction Of Cyclic Imines
Length = 159
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 90
>pdb|1SWS|A Chain A, Core-Streptavidin Mutant D128a At Ph 4.5
pdb|1SWS|B Chain B, Core-Streptavidin Mutant D128a At Ph 4.5
pdb|1SWS|C Chain C, Core-Streptavidin Mutant D128a At Ph 4.5
pdb|1SWS|D Chain D, Core-Streptavidin Mutant D128a At Ph 4.5
pdb|1SWT|A Chain A, Core-Streptavidin Mutant D128a In Complex With Biotin At
Ph 4.5
pdb|1SWT|B Chain B, Core-Streptavidin Mutant D128a In Complex With Biotin At
Ph 4.5
Length = 127
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|4GJV|A Chain A, Streptavidin-s112h
Length = 159
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 38 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 90
>pdb|1N43|A Chain A, Streptavidin Mutant N23a With Biotin At 1.89a
pdb|1N43|B Chain B, Streptavidin Mutant N23a With Biotin At 1.89a
pdb|1N43|C Chain C, Streptavidin Mutant N23a With Biotin At 1.89a
pdb|1N43|D Chain D, Streptavidin Mutant N23a With Biotin At 1.89a
pdb|1N4J|A Chain A, Streptavidin Mutant N23a At 2.18a
Length = 127
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1HXL|A Chain A, Miniprotein Mp-2 (V10a) Complex With Streptavidin
pdb|1HXL|B Chain B, Miniprotein Mp-2 (V10a) Complex With Streptavidin
pdb|1HXZ|A Chain A, Miniprotein Mp-2 Complex With Streptavidin
pdb|1HXZ|B Chain B, Miniprotein Mp-2 Complex With Streptavidin
pdb|1HY2|A Chain A, Miniprotein Mp-1 Complex With Streptavidin
pdb|1HY2|B Chain B, Miniprotein Mp-1 Complex With Streptavidin
pdb|1HY2|C Chain C, Miniprotein Mp-1 Complex With Streptavidin
pdb|1HY2|D Chain D, Miniprotein Mp-1 Complex With Streptavidin
pdb|1HQQ|A Chain A, Miniprotein Mp-2 (M9a) Complex With Streptavidin
pdb|1HQQ|B Chain B, Miniprotein Mp-2 (M9a) Complex With Streptavidin
pdb|1HQQ|C Chain C, Miniprotein Mp-2 (M9a) Complex With Streptavidin
pdb|1HQQ|D Chain D, Miniprotein Mp-2 (M9a) Complex With Streptavidin
Length = 129
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 28 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 86
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 87 VGGAEARINTQWLLTSGTTEANAWKS 112
>pdb|1SWQ|A Chain A, Core-Streptavidin Mutant W120a At Ph 7.5
pdb|1SWQ|B Chain B, Core-Streptavidin Mutant W120a At Ph 7.5
pdb|1SWQ|C Chain C, Core-Streptavidin Mutant W120a At Ph 7.5
pdb|1SWQ|D Chain D, Core-Streptavidin Mutant W120a At Ph 7.5
pdb|1SWR|A Chain A, Core-Streptavidin Mutant W120a In Complex With Biotin At
Ph 7.5
pdb|1SWR|B Chain B, Core-Streptavidin Mutant W120a In Complex With Biotin At
Ph 7.5
pdb|1SWR|C Chain C, Core-Streptavidin Mutant W120a In Complex With Biotin At
Ph 7.5
pdb|1SWR|D Chain D, Core-Streptavidin Mutant W120a In Complex With Biotin At
Ph 7.5
Length = 127
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 78
>pdb|1RXH|A Chain A, Crystal Structure Of Streptavidin Mutant L124r (M1)
Complexed With Biotinyl P-Nitroanilide (Bni)
pdb|1RXH|B Chain B, Crystal Structure Of Streptavidin Mutant L124r (M1)
Complexed With Biotinyl P-Nitroanilide (Bni)
Length = 127
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEKS 55
+LT + +VG E R ++TG + A G G+ +GW Y AH +
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSAT 78
>pdb|1SWA|A Chain A, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWA|B Chain B, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWA|C Chain C, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWA|D Chain D, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWB|A Chain A, Apo-Core-Streptavidin At Ph 7.5
pdb|1SWB|B Chain B, Apo-Core-Streptavidin At Ph 7.5
pdb|1SWB|C Chain C, Apo-Core-Streptavidin At Ph 7.5
pdb|1SWB|D Chain D, Apo-Core-Streptavidin At Ph 7.5
pdb|1SWC|A Chain A, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWC|B Chain B, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWC|C Chain C, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWC|D Chain D, Apo-Core-Streptavidin At Ph 4.5
pdb|1SWD|A Chain A, Apo-core-streptavidin In Complex With Biotin (two
Unoccupied Binding Sites) At Ph 4.5
pdb|1SWD|B Chain B, Apo-core-streptavidin In Complex With Biotin (two
Unoccupied Binding Sites) At Ph 4.5
pdb|1SWD|C Chain C, Apo-core-streptavidin In Complex With Biotin (two
Unoccupied Binding Sites) At Ph 4.5
pdb|1SWD|D Chain D, Apo-core-streptavidin In Complex With Biotin (two
Unoccupied Binding Sites) At Ph 4.5
pdb|1SWE|A Chain A, Apo-Core-Streptavidin In Complex With Biotin At Ph 4.5
pdb|1SWE|B Chain B, Apo-Core-Streptavidin In Complex With Biotin At Ph 4.5
pdb|1SWE|C Chain C, Apo-Core-Streptavidin In Complex With Biotin At Ph 4.5
pdb|1SWE|D Chain D, Apo-Core-Streptavidin In Complex With Biotin At Ph 4.5
pdb|1MK5|A Chain A, Wildtype Core-streptavidin With Biotin At 1.4a.
pdb|1MK5|B Chain B, Wildtype Core-streptavidin With Biotin At 1.4a.
pdb|2F01|A Chain A, Epi-Biotin Complex With Core Streptavidin
pdb|2F01|B Chain B, Epi-Biotin Complex With Core Streptavidin
pdb|2GH7|A Chain A, Epi-Biotin Complex With Core Streptavidin
pdb|2GH7|B Chain B, Epi-Biotin Complex With Core Streptavidin
pdb|2G5L|A Chain A, Streptavidin In Complex With Nanotag
pdb|2G5L|B Chain B, Streptavidin In Complex With Nanotag
pdb|3RY1|A Chain A, Wild-Type Core Streptavidin At Atomic Resolution
pdb|3RY1|B Chain B, Wild-Type Core Streptavidin At Atomic Resolution
pdb|3RY1|C Chain C, Wild-Type Core Streptavidin At Atomic Resolution
pdb|3RY1|D Chain D, Wild-Type Core Streptavidin At Atomic Resolution
pdb|3RY2|A Chain A, Wild-Type Core Streptavidin-Biotin Complex At Atomic
Resolution
pdb|3RY2|B Chain B, Wild-Type Core Streptavidin-Biotin Complex At Atomic
Resolution
Length = 127
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1PTS|A Chain A, Crystal Structure And Ligand Binding Studies Of A Screened
Peptide Complexed With Streptavidin
pdb|1PTS|B Chain B, Crystal Structure And Ligand Binding Studies Of A Screened
Peptide Complexed With Streptavidin
pdb|1SRE|A Chain A, Crystallographic And Thermodynamic Comparison Of Natural
And Synthetic Ligands Bound To Streptavidin
pdb|1SRE|B Chain B, Crystallographic And Thermodynamic Comparison Of Natural
And Synthetic Ligands Bound To Streptavidin
pdb|1SRF|A Chain A, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRF|B Chain B, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRG|A Chain A, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRG|B Chain B, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRH|A Chain A, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRH|B Chain B, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRI|A Chain A, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRI|B Chain B, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRJ|A Chain A, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|1SRJ|B Chain B, Structure-Based Design Of Synthetic Azobenzene Ligands For
Streptavidin
pdb|2IZA|A Chain A, Apostreptavidin Ph 2.00 I4122 Structure
Length = 121
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1N7Y|A Chain A, Streptavidin Mutant N23e At 1.96a
pdb|1N7Y|B Chain B, Streptavidin Mutant N23e At 1.96a
pdb|1N7Y|C Chain C, Streptavidin Mutant N23e At 1.96a
pdb|1N7Y|D Chain D, Streptavidin Mutant N23e At 1.96a
Length = 127
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1RSU|B Chain B, Complex Between Streptavidin And The Strep-Tag Ii Peptide
pdb|1RST|B Chain B, Complex Between Streptavidin And The Strep-Tag Peptide
Length = 127
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1STR|B Chain B, Streptavidin Dimerized By Disulfide-Bonded Peptide Ac-
Chpqnt-Nh2 Dimer
pdb|1STR|D Chain D, Streptavidin Dimerized By Disulfide-Bonded Peptide Ac-
Chpqnt-Nh2 Dimer
pdb|1STS|B Chain B, Streptavidin Dimerized By Disulfide-Bonded Peptide
Fchpqnt- Nh2 Dimer
pdb|1STS|D Chain D, Streptavidin Dimerized By Disulfide-Bonded Peptide
Fchpqnt- Nh2 Dimer
pdb|1VWA|B Chain B, Streptavidin-Fshpqnt
pdb|1VWA|D Chain D, Streptavidin-Fshpqnt
pdb|1VWB|B Chain B, Streptavidin-Cyclo-Ac-[chpqfc]-Nh2, Ph 11.8
pdb|1VWC|B Chain B, Streptavidin-Cyclo-Ac-[chpqfc]-Nh2, Ph 2.0
pdb|1VWD|B Chain B, Streptavidin-Cyclo-Ac-[chpqfc]-Nh2, Ph 3.0
pdb|1VWE|B Chain B, Streptavidin-Cyclo-Ac-[chpqfc]-Nh2, Ph 3.6
pdb|1VWF|B Chain B, Streptavidin Complexed With Cyclo-Ac-[chpqgppc]-Nh2
Monomer, Ph 3.67
pdb|1VWG|B Chain B, Streptavidin Complexed With The Head-To-Tail
Disulfide-Bonded Peptide Dimer Of
Cyclo-Ac-[chpqgppc]-Nh2, Ph 2.5
pdb|1VWH|B Chain B, Streptavidin Complexed With The Head-To-Tail Disulfide-
Bonded Peptide Dimer Of Cyclo-Ac-[chpqgppc]-Nh2, Ph 3.5
pdb|1VWI|D Chain D, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 1.5,
I222 Complex
pdb|1VWJ|D Chain D, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 2.5,
I222 Complex
pdb|1VWK|D Chain D, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2
pdb|1VWL|D Chain D, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 3.5,
I222 Complex
pdb|1VWM|B Chain B, Streptavidin-Cyclo-Ac-[chpqfc]-Nh2, Ph 4.2
pdb|1VWN|B Chain B, Streptavidin-Cyclo-Ac-[chpqfc]-Nh2, Ph 4.8
pdb|1VWO|B Chain B, Streptavidin Complexed With Cyclo-Ac-[chpqgppc]-Nh2
Monomer, Ph 2.85
pdb|1VWP|B Chain B, Streptavidin Complexed With Cyclo-Ac-[chpqgppc]-Nh2
Monomer, Ph 2.5
pdb|1VWQ|B Chain B, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 2.5,
I4122 Complex
pdb|1VWR|B Chain B, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 3.5,
I4122 Complex
pdb|2IZD|D Chain D, Apostreptavidin Ph 3.0 I222 Complex
pdb|2IZE|B Chain B, Apostreptavidin Ph 3.08 I222 Complex
pdb|2IZE|D Chain D, Apostreptavidin Ph 3.08 I222 Complex
pdb|2IZF|B Chain B, Streptavidin-Biotin Ph 4.0 I222 Complex
pdb|2IZF|D Chain D, Streptavidin-Biotin Ph 4.0 I222 Complex
pdb|2IZG|D Chain D, Streptavidin-Biotin Ph 2.0 I222 Complex
pdb|2IZH|B Chain B, Streptavidin-Biotin Ph 10.44 I222 Complex
pdb|2IZH|D Chain D, Streptavidin-Biotin Ph 10.44 I222 Complex
pdb|2IZL|B Chain B, Streptavidin-2-Iminobiotin Ph 7.3 I222 Complex
pdb|2IZL|D Chain D, Streptavidin-2-Iminobiotin Ph 7.3 I222 Complex
pdb|2IZI|A Chain A, Streptavidin-Biotin Ph 2.53 I4122 Structure
pdb|2IZJ|A Chain A, Streptavidin-biotin Ph 3.50 I4122 Structure
pdb|2IZK|A Chain A, Streptavidin-Glycoluril Ph 2.58 I4122 Complex
pdb|2IZC|D Chain D, Apostreptavidin Ph 2.0 I222 Complex
pdb|1VWI|B Chain B, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 1.5,
I222 Complex
pdb|2IZD|B Chain B, Apostreptavidin Ph 3.0 I222 Complex
pdb|1VWK|B Chain B, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2
pdb|1VWL|B Chain B, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 3.5,
I222 Complex
pdb|1VWJ|B Chain B, Streptavidin-Cyclo-[5-S-Valeramide-Hpqgppc]k-Nh2, Ph 2.5,
I222 Complex
pdb|2IZG|B Chain B, Streptavidin-Biotin Ph 2.0 I222 Complex
pdb|2IZC|B Chain B, Apostreptavidin Ph 2.0 I222 Complex
Length = 123
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|3MG5|A Chain A, Core-Streptavidin Mutant F130l In Complex With Biotin
pdb|3MG5|B Chain B, Core-Streptavidin Mutant F130l In Complex With Biotin
pdb|3MG5|C Chain C, Core-Streptavidin Mutant F130l In Complex With Biotin
pdb|3MG5|D Chain D, Core-Streptavidin Mutant F130l In Complex With Biotin
Length = 127
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
>pdb|1LCV|A Chain A, Streptavidin-Norbiotin Complex
pdb|1LCV|B Chain B, Streptavidin-Norbiotin Complex
pdb|1LCW|A Chain A, Streptavidin-homobiotin Complex
pdb|1LCW|B Chain B, Streptavidin-homobiotin Complex
Length = 121
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 24 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 82
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 83 VGGAEARINTQWLLTSGTTEANAWKS 108
>pdb|2IZB|A Chain A, Apostreptavidin Ph 3.12 I4122 Structure
Length = 122
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 8 SLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGW------KYETAHEK---SQKY 58
+LT + +VG E R ++TG + A G G+ +GW Y AH S +Y
Sbjct: 26 ALTGTYESAVGNAESRYVLTGRYDSAPA-TDGSGTALGWTVAWKNNYRNAHSATTWSGQY 84
Query: 59 ---KEGKSVLERFKVSGPDGSNYWVS 81
E + + SG +N W S
Sbjct: 85 VGGAEARINTQWLLTSGTTEANAWKS 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,028,919
Number of Sequences: 62578
Number of extensions: 107652
Number of successful extensions: 239
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 35
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)