Query 034460
Match_columns 94
No_of_seqs 109 out of 327
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ga3_A Interferon-induced heli 59.1 7.3 0.00025 27.1 2.9 55 9-67 43-99 (133)
2 3eqt_A ATP-dependent RNA helic 54.0 4.4 0.00015 28.6 1.1 41 27-69 62-104 (145)
3 3fac_A Putative uncharacterize 37.5 12 0.0004 24.1 1.1 18 31-48 64-81 (118)
4 1twf_J DNA-directed RNA polyme 35.1 4.7 0.00016 25.5 -1.1 20 33-52 3-22 (70)
5 3mao_A Methionine-R-sulfoxide 33.1 14 0.00048 24.8 1.0 17 32-48 59-75 (105)
6 1ef4_A Subunit N, DNA-directed 27.9 5.5 0.00019 24.1 -1.6 18 34-51 3-20 (55)
7 3hcg_A Peptide methionine sulf 27.7 19 0.00067 25.4 1.0 19 33-51 91-109 (146)
8 3e0o_A Peptide methionine sulf 27.4 20 0.00068 25.3 1.0 24 28-52 85-108 (144)
9 4ayb_N DNA-directed RNA polyme 26.1 7.1 0.00024 24.4 -1.4 18 33-50 3-20 (66)
10 2l1u_A MSRB2, methionine-R-sul 25.6 25 0.00085 24.8 1.2 18 33-50 92-109 (143)
11 3hcj_A MSRB, peptide methionin 24.8 24 0.00081 25.2 1.0 19 33-51 98-116 (154)
12 1x6m_A GFA, glutathione-depend 22.1 42 0.0014 23.6 1.8 19 31-49 95-113 (196)
13 1loi_A Cyclic 3',5'-AMP specif 21.9 7.8 0.00027 20.1 -1.5 14 33-46 4-19 (26)
14 2kv1_A Methionine-R-sulfoxide 21.9 27 0.00093 24.1 0.8 17 32-48 66-82 (124)
15 3cxk_A Methionine-R-sulfoxide 21.9 29 0.001 25.0 1.0 19 32-50 120-138 (164)
16 2kao_A Methionine-R-sulfoxide 21.8 25 0.00087 24.2 0.6 17 32-48 66-82 (124)
17 3lrr_A Probable ATP-dependent 21.4 50 0.0017 22.4 2.0 38 28-67 53-94 (121)
No 1
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=59.14 E-value=7.3 Score=27.15 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=33.4
Q ss_pred cccccccCcCCccceEeeeeceEEeeeeeeecCCceeeeeeeeccccc--CcccceEEEEe
Q 034460 9 LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQ--KYKEGKSVLER 67 (94)
Q Consensus 9 f~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~sQ--KYKEGKfILE~ 67 (94)
|...+.+...+...+. ..+-.+-..|+|. |++.+|-.. .|..-+ -.|.-.|+||-
T Consensus 43 F~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m--~yk~~~LP~LkIksFVve~ 99 (133)
T 3ga3_A 43 FKELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMM--VHKGLDLPCLKIRNFVVVF 99 (133)
T ss_dssp GGGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEE--EETTEEEEEECGGGEEEEE
T ss_pred heeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhE--EeccccCceEEEEEEEEEc
Confidence 3445555544434344 3556778889999 999987644 333222 45667788764
No 2
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=54.02 E-value=4.4 Score=28.65 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=27.4
Q ss_pred eeceEEeeeeeeecCCceeeeeeeeccccc--CcccceEEEEecc
Q 034460 27 TGMHTVADIFCVGCGSIVGWKYETAHEKSQ--KYKEGKSVLERFK 69 (94)
Q Consensus 27 TG~H~V~DI~C~~C~~~lGWkY~~A~e~sQ--KYKEGKfILE~~~ 69 (94)
.+-..-..|+|..|++.+|-.. .|..-+ -.|.-.|++|-..
T Consensus 62 ~d~~~~g~I~C~~Cgq~WG~~m--~yk~~~LP~LkIksFVve~~~ 104 (145)
T 3eqt_A 62 KDWKPGGVISCRNCGEVWGLQM--IYKSVKLPVLKVRSMLLETPQ 104 (145)
T ss_dssp SSEEEEEEEEETTTCCEEEEEE--EETTEEEEEECGGGEEEEETT
T ss_pred ccccCCcEEEchhhChhhHhhE--EeccccCceEeEEEEEEEcCC
Confidence 3345667799999999987644 333222 4577788887643
No 3
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=37.53 E-value=12 Score=24.07 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=14.4
Q ss_pred EEeeeeeeecCCceeeee
Q 034460 31 TVADIFCVGCGSIVGWKY 48 (94)
Q Consensus 31 ~V~DI~C~~C~~~lGWkY 48 (94)
.+.--||..|++.|-|..
T Consensus 64 ~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 64 TAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp CSEEEEETTTCCEEEEEC
T ss_pred CEeeEECCCCCccccCcc
Confidence 456679999999998764
No 4
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=35.06 E-value=4.7 Score=25.52 Aligned_cols=20 Identities=35% Similarity=0.762 Sum_probs=16.2
Q ss_pred eeeeeeecCCceeeeeeeec
Q 034460 33 ADIFCVGCGSIVGWKYETAH 52 (94)
Q Consensus 33 ~DI~C~~C~~~lGWkY~~A~ 52 (94)
=+|.|-+|+..+|=+|++=-
T Consensus 3 iPVRCFTCGkvi~~~we~y~ 22 (70)
T 1twf_J 3 VPVRCFSCGKVVGDKWESYL 22 (70)
T ss_dssp CCSBCTTTCCBCTTCHHHHH
T ss_pred CCeecCCCCCChHHHHHHHH
Confidence 36889999999998886543
No 5
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=33.12 E-value=14 Score=24.79 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=14.9
Q ss_pred EeeeeeeecCCceeeee
Q 034460 32 VADIFCVGCGSIVGWKY 48 (94)
Q Consensus 32 V~DI~C~~C~~~lGWkY 48 (94)
-..|.|..|+..||--+
T Consensus 59 RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 59 ALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCCCccCccc
Confidence 36899999999999866
No 6
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=27.90 E-value=5.5 Score=24.14 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=15.2
Q ss_pred eeeeeecCCceeeeeeee
Q 034460 34 DIFCVGCGSIVGWKYETA 51 (94)
Q Consensus 34 DI~C~~C~~~lGWkY~~A 51 (94)
+|.|-+|+.++|=+|++=
T Consensus 3 PVRCFTCGkvi~~~we~y 20 (55)
T 1ef4_A 3 PVRCLSCGKPVSAYFNEY 20 (55)
T ss_dssp SSSCSCTTSCCHHHHHHH
T ss_pred CeecCCCCCChhHHHHHH
Confidence 578999999999888653
No 7
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=27.75 E-value=19 Score=25.40 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=15.7
Q ss_pred eeeeeeecCCceeeeeeee
Q 034460 33 ADIFCVGCGSIVGWKYETA 51 (94)
Q Consensus 33 ~DI~C~~C~~~lGWkY~~A 51 (94)
..|.|..|+.+||--+...
T Consensus 91 tEV~C~~Cg~HLGHVF~DG 109 (146)
T 3hcg_A 91 TEVRSHAADSHLGHVFPDG 109 (146)
T ss_dssp EEEEETTTCCEEEEEESCS
T ss_pred EEEEeCCCCCccCceeCCC
Confidence 4689999999999877544
No 8
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=27.40 E-value=20 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=17.7
Q ss_pred eceEEeeeeeeecCCceeeeeeeec
Q 034460 28 GMHTVADIFCVGCGSIVGWKYETAH 52 (94)
Q Consensus 28 G~H~V~DI~C~~C~~~lGWkY~~A~ 52 (94)
|+.. ..|.|..|+.+||--+....
T Consensus 85 gm~R-tEV~C~~Cg~HLGHVF~DGP 108 (144)
T 3e0o_A 85 GMIR-TEVRSRTADSHLGHVFNDGP 108 (144)
T ss_dssp TSCE-EEEEETTTCCEEEEEESCCS
T ss_pred CceE-EEEEcCCCCCccCCccCCCC
Confidence 5443 36999999999998775443
No 9
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=26.08 E-value=7.1 Score=24.41 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=15.4
Q ss_pred eeeeeeecCCceeeeeee
Q 034460 33 ADIFCVGCGSIVGWKYET 50 (94)
Q Consensus 33 ~DI~C~~C~~~lGWkY~~ 50 (94)
=+|.|-+|+..+|=||+.
T Consensus 3 IPVRCFTCGkvi~~k~~~ 20 (66)
T 4ayb_N 3 IPIRCFTCGSLIADKWQP 20 (66)
T ss_dssp CCSBCTTTCCBCHHHHHH
T ss_pred CCcccCCCcHhHHHHHHH
Confidence 368899999999998864
No 10
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=25.59 E-value=25 Score=24.78 Aligned_cols=18 Identities=17% Similarity=0.632 Sum_probs=15.2
Q ss_pred eeeeeeecCCceeeeeee
Q 034460 33 ADIFCVGCGSIVGWKYET 50 (94)
Q Consensus 33 ~DI~C~~C~~~lGWkY~~ 50 (94)
..|.|..|+..||=-+..
T Consensus 92 tEV~C~~Cg~HLGHVF~D 109 (143)
T 2l1u_A 92 MEVVCKQCEAHLGHVFPD 109 (143)
T ss_dssp EEEEESSSCCCCEEEECC
T ss_pred EEEEECCCCCcCCcccCC
Confidence 468999999999997754
No 11
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=24.75 E-value=24 Score=25.20 Aligned_cols=19 Identities=26% Similarity=0.712 Sum_probs=15.5
Q ss_pred eeeeeeecCCceeeeeeee
Q 034460 33 ADIFCVGCGSIVGWKYETA 51 (94)
Q Consensus 33 ~DI~C~~C~~~lGWkY~~A 51 (94)
..|.|..|+.+||--+...
T Consensus 98 tEV~C~~Cg~HLGHVF~DG 116 (154)
T 3hcj_A 98 TEIVCARCDSHLGHVFPDG 116 (154)
T ss_dssp EEEEETTTCCEEEEEESCS
T ss_pred EEEEeCCCCCccCCccCCC
Confidence 4689999999999866543
No 12
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=22.08 E-value=42 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.1
Q ss_pred EEeeeeeeecCCceeeeee
Q 034460 31 TVADIFCVGCGSIVGWKYE 49 (94)
Q Consensus 31 ~V~DI~C~~C~~~lGWkY~ 49 (94)
.+.--||..|++.|-|...
T Consensus 95 ~~~r~FC~~CGs~l~~~~~ 113 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIE 113 (196)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CeeeEECCCCCCcCCcccc
Confidence 3566799999999977654
No 13
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.94 E-value=7.8 Score=20.09 Aligned_cols=14 Identities=50% Similarity=1.305 Sum_probs=10.4
Q ss_pred eeeeeeecCCc--eee
Q 034460 33 ADIFCVGCGSI--VGW 46 (94)
Q Consensus 33 ~DI~C~~C~~~--lGW 46 (94)
.|.||..|..+ +||
T Consensus 4 vdffcetcskpwlvgw 19 (26)
T 1loi_A 4 VDFFCETCSKPWLVGW 19 (26)
T ss_dssp HHHHHHTSSCTTGGGG
T ss_pred HHHHHHhcCCchhhhh
Confidence 36789999875 577
No 14
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=21.92 E-value=27 Score=24.07 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=14.6
Q ss_pred EeeeeeeecCCceeeee
Q 034460 32 VADIFCVGCGSIVGWKY 48 (94)
Q Consensus 32 V~DI~C~~C~~~lGWkY 48 (94)
...|.|+.|+..||=-.
T Consensus 66 r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 66 ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CEEEECTTTTCCCEEEC
T ss_pred EEEEEEecCCCccCCcc
Confidence 35799999999999865
No 15
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=21.86 E-value=29 Score=24.97 Aligned_cols=19 Identities=26% Similarity=0.712 Sum_probs=15.4
Q ss_pred EeeeeeeecCCceeeeeee
Q 034460 32 VADIFCVGCGSIVGWKYET 50 (94)
Q Consensus 32 V~DI~C~~C~~~lGWkY~~ 50 (94)
-..|.|..|+..||=-+..
T Consensus 120 RtEV~C~~Cg~HLGHVF~D 138 (164)
T 3cxk_A 120 RVEVRCNQCGAHLGHVFED 138 (164)
T ss_dssp EEEEEETTTCCEEEEEESC
T ss_pred EEEEEeCCCCCccCcccCC
Confidence 3468999999999986643
No 16
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=21.77 E-value=25 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=14.9
Q ss_pred EeeeeeeecCCceeeee
Q 034460 32 VADIFCVGCGSIVGWKY 48 (94)
Q Consensus 32 V~DI~C~~C~~~lGWkY 48 (94)
-..|.|..|+..||=-+
T Consensus 66 RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 66 ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CEEEECTTTTCCCEEEC
T ss_pred EEEEEeCCCCCcCCccC
Confidence 36899999999999866
No 17
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=21.41 E-value=50 Score=22.36 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=26.1
Q ss_pred eceEEeeeeee--ecCCceeeeeeeeccccc--CcccceEEEEe
Q 034460 28 GMHTVADIFCV--GCGSIVGWKYETAHEKSQ--KYKEGKSVLER 67 (94)
Q Consensus 28 G~H~V~DI~C~--~C~~~lGWkY~~A~e~sQ--KYKEGKfILE~ 67 (94)
+-++-..|+|. .|++.+|-.. -|..-+ -.|.-.|+||-
T Consensus 53 d~~~~g~I~C~~~~Cg~~WG~~m--~yk~~~LP~LkI~sfvve~ 94 (121)
T 3lrr_A 53 SFEKRAKIFCARQNCSHDWGIHV--KYKTFEIPVIKIESFVVED 94 (121)
T ss_dssp TEEEEEEEEECSTTTCCEEEEEE--EETTEEEEEECGGGEEEEE
T ss_pred cccCCcEEEeCccccChhhhheE--EeccccCceEEEEEEEEEe
Confidence 45677889999 9999988644 332222 45667788775
Done!