Query 034460
Match_columns 94
No_of_seqs 109 out of 327
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 04:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034460.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034460hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bi6h1 g.3.12.1 (H:8-31) Brom 43.7 1.2 8.7E-05 22.0 -1.1 17 29-45 3-19 (26)
2 d1x68a2 g.39.1.3 (A:37-70) Fou 34.2 5.9 0.00043 20.5 0.7 11 33-43 19-29 (34)
3 d1xm0a1 b.88.1.3 (A:1-143) Pep 33.5 6.6 0.00048 25.9 1.1 18 33-50 88-105 (143)
4 d1l1da_ b.88.1.3 (A:) C-termin 32.3 7.4 0.00054 25.6 1.1 19 34-52 91-109 (144)
5 d1x63a2 g.39.1.3 (A:45-76) Fou 32.0 4.9 0.00036 20.5 0.1 11 36-46 1-11 (32)
6 d1twfj_ a.4.11.1 (J:) RNA poly 29.8 3.4 0.00024 24.3 -0.9 18 33-50 3-20 (65)
7 d1ef4a_ a.4.11.1 (A:) RNA poly 29.5 2.6 0.00019 24.1 -1.4 17 34-50 3-19 (55)
8 d2jnea1 g.41.18.1 (A:1-71) Hyp 28.2 7.9 0.00058 23.1 0.6 19 34-52 2-20 (71)
9 d1e7la2 d.4.1.5 (A:1-103) Reco 23.4 3.4 0.00025 25.9 -1.8 18 27-46 50-67 (103)
10 d1x4ka1 g.39.1.3 (A:35-66) Fou 22.7 9.8 0.00071 19.5 0.3 11 37-47 2-12 (32)
11 d1wyha1 g.39.1.3 (A:35-66) Fou 21.0 8.4 0.00061 19.8 -0.2 11 37-47 2-12 (32)
12 d1x6ma_ b.88.1.4 (A:) Glutathi 20.2 20 0.0014 24.3 1.6 20 32-51 96-115 (196)
No 1
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=43.73 E-value=1.2 Score=21.98 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=13.0
Q ss_pred ceEEeeeeeeecCCcee
Q 034460 29 MHTVADIFCVGCGSIVG 45 (94)
Q Consensus 29 ~H~V~DI~C~~C~~~lG 45 (94)
.++-++-||..|+..+|
T Consensus 3 tysdcpgfcktckaefg 19 (26)
T d2bi6h1 3 TYSDCPGFCKTCKAEFG 19 (26)
T ss_dssp CCSSCCTTCSSBCCBTT
T ss_pred ccccCchHHHHHHHHhC
Confidence 34556779999998777
No 2
>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.17 E-value=5.9 Score=20.48 Aligned_cols=11 Identities=55% Similarity=1.150 Sum_probs=9.0
Q ss_pred eeeeeeecCCc
Q 034460 33 ADIFCVGCGSI 43 (94)
Q Consensus 33 ~DI~C~~C~~~ 43 (94)
.+|+|..|++-
T Consensus 19 ~~i~c~~cgsg 29 (34)
T d1x68a2 19 KEIFCQKCGSG 29 (34)
T ss_dssp TEEEETTTTCC
T ss_pred CcEEehhcCCC
Confidence 37999999973
No 3
>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}
Probab=33.54 E-value=6.6 Score=25.93 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=15.0
Q ss_pred eeeeeeecCCceeeeeee
Q 034460 33 ADIFCVGCGSIVGWKYET 50 (94)
Q Consensus 33 ~DI~C~~C~~~lGWkY~~ 50 (94)
..|.|..|+.+||--...
T Consensus 88 ~Ev~C~~Cg~HLGHVF~D 105 (143)
T d1xm0a1 88 TEVRSRTADSHLGHVFND 105 (143)
T ss_dssp CEEEESSCTTCCCEEEES
T ss_pred cceEecCCCCccCccCCC
Confidence 568999999999986653
No 4
>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}
Probab=32.34 E-value=7.4 Score=25.65 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=15.9
Q ss_pred eeeeeecCCceeeeeeeec
Q 034460 34 DIFCVGCGSIVGWKYETAH 52 (94)
Q Consensus 34 DI~C~~C~~~lGWkY~~A~ 52 (94)
.|.|..|+.+||=-.....
T Consensus 91 Ev~C~~Cg~HLGHVF~DGp 109 (144)
T d1l1da_ 91 EVRSRAADSHLGHVFPDGP 109 (144)
T ss_dssp EEEETTTCCEEEEEESCSC
T ss_pred eeEecCCCCccCcccCCCC
Confidence 6899999999999776544
No 5
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.98 E-value=4.9 Score=20.53 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.6
Q ss_pred eeeecCCceee
Q 034460 36 FCVGCGSIVGW 46 (94)
Q Consensus 36 ~C~~C~~~lGW 46 (94)
.|++|++.+|=
T Consensus 1 tcs~ckq~igs 11 (32)
T d1x63a2 1 TCSNCKQVIGT 11 (32)
T ss_dssp CCSSSCCCCTT
T ss_pred Ccchhhhhccc
Confidence 38899988873
No 6
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.84 E-value=3.4 Score=24.29 Aligned_cols=18 Identities=39% Similarity=0.922 Sum_probs=15.4
Q ss_pred eeeeeeecCCceeeeeee
Q 034460 33 ADIFCVGCGSIVGWKYET 50 (94)
Q Consensus 33 ~DI~C~~C~~~lGWkY~~ 50 (94)
=+|.|-+|+..+|=||+.
T Consensus 3 IPVRCFTCgkvi~~k~~~ 20 (65)
T d1twfj_ 3 VPVRCFSCGKVVGDKWES 20 (65)
T ss_dssp CCSBCTTTCCBCTTCHHH
T ss_pred CCcccCCCCcChHHHHHH
Confidence 368999999999988864
No 7
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.48 E-value=2.6 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=14.6
Q ss_pred eeeeeecCCceeeeeee
Q 034460 34 DIFCVGCGSIVGWKYET 50 (94)
Q Consensus 34 DI~C~~C~~~lGWkY~~ 50 (94)
+|.|-+|+.+||=||+.
T Consensus 3 PVRCFTCGkvia~k~~~ 19 (55)
T d1ef4a_ 3 PVRCLSCGKPVSAYFNE 19 (55)
T ss_dssp SSSCSCTTSCCHHHHHH
T ss_pred CcCcCCCchhHHHHHHH
Confidence 68899999999988753
No 8
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=28.23 E-value=7.9 Score=23.06 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=15.1
Q ss_pred eeeeeecCCceeeeeeeec
Q 034460 34 DIFCVGCGSIVGWKYETAH 52 (94)
Q Consensus 34 DI~C~~C~~~lGWkY~~A~ 52 (94)
++.|..|...|-|+...++
T Consensus 2 ~~~CP~C~~eL~~~~~~~~ 20 (71)
T d2jnea1 2 ELHCPQCQHVLDQDNGHAR 20 (71)
T ss_dssp CCBCSSSCSBEEEETTEEE
T ss_pred CCcCCCccCcccccCCCEe
Confidence 4789999999999875544
No 9
>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=23.36 E-value=3.4 Score=25.95 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=15.5
Q ss_pred eeceEEeeeeeeecCCceee
Q 034460 27 TGMHTVADIFCVGCGSIVGW 46 (94)
Q Consensus 27 TG~H~V~DI~C~~C~~~lGW 46 (94)
|| .||-+-|..|+..||-
T Consensus 50 TG--~VRGlLC~~CN~~lG~ 67 (103)
T d1e7la2 50 AG--KVRGLLCNLCDAAEGQ 67 (103)
T ss_dssp TT--BEEEEECHHHHHHHHH
T ss_pred CC--ceeeecchHHhHhhcc
Confidence 55 3999999999999985
No 10
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.70 E-value=9.8 Score=19.49 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=9.5
Q ss_pred eeecCCceeee
Q 034460 37 CVGCGSIVGWK 47 (94)
Q Consensus 37 C~~C~~~lGWk 47 (94)
|..|.+++|=|
T Consensus 2 C~~C~qPIGtk 12 (32)
T d1x4ka1 2 CHRCQQPIGTK 12 (32)
T ss_dssp CSSSCCCCCSS
T ss_pred cccccCccccc
Confidence 88999999965
No 11
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.03 E-value=8.4 Score=19.77 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=9.2
Q ss_pred eeecCCceeee
Q 034460 37 CVGCGSIVGWK 47 (94)
Q Consensus 37 C~~C~~~lGWk 47 (94)
|..|.+++|=|
T Consensus 2 C~~C~qPIGtk 12 (32)
T d1wyha1 2 CSGCEQPLGSR 12 (32)
T ss_dssp CTTTCCBTTTS
T ss_pred cccccCccccc
Confidence 88999999954
No 12
>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
Probab=20.21 E-value=20 Score=24.27 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.5
Q ss_pred EeeeeeeecCCceeeeeeee
Q 034460 32 VADIFCVGCGSIVGWKYETA 51 (94)
Q Consensus 32 V~DI~C~~C~~~lGWkY~~A 51 (94)
+..-||..|++.|=++++.+
T Consensus 96 i~R~FC~~CGs~lf~r~e~~ 115 (196)
T d1x6ma_ 96 IQRHRCRDCGVHMYGRIENR 115 (196)
T ss_dssp EEEEEETTTCCEEEEEECCT
T ss_pred eeeeccCCCCCcEEEeecCC
Confidence 55669999999997777543
Done!