Query         034461
Match_columns 94
No_of_seqs    101 out of 672
Neff          4.1 
Searched_HMMs 46136
Date          Fri Mar 29 03:06:47 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034461hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG1773 Stress responsive prot  99.9 4.8E-27   1E-31  151.0   5.8   61    1-61      1-61  (63)
  2 COG0401 Uncharacterized homolo  99.9   5E-25 1.1E-29  138.8   5.0   55    4-58      2-56  (56)
  3 PF01679 Pmp3:  Proteolipid mem  99.9 8.7E-23 1.9E-27  126.0   3.6   50    7-57      2-51  (51)
  4 PF14373 Imm_superinfect:  Supe  86.5    0.71 1.5E-05   27.6   2.3   23   30-52     18-42  (43)
  5 PLN00082 photosystem II reacti  65.7     3.5 7.5E-05   27.0   1.1   27   36-62     32-58  (67)
  6 PF07123 PsbW:  Photosystem II   65.3       3 6.4E-05   30.7   0.8   26   36-61    104-129 (138)
  7 PLN00092 photosystem I reactio  58.5     5.7 0.00012   29.1   1.3   26   36-61    103-128 (137)
  8 PLN00077 photosystem II reacti  58.3     5.4 0.00012   29.0   1.1   27   36-62     93-119 (128)
  9 PF11298 DUF3099:  Protein of u  56.8     6.7 0.00014   25.7   1.3   21    7-27     44-64  (73)
 10 COG4665 FcbT2 TRAP-type mannit  35.1      31 0.00068   26.4   2.1   26   31-56     89-114 (182)
 11 PRK14584 hmsS hemin storage sy  34.1      12 0.00026   27.8  -0.2   43   31-74     13-55  (153)
 12 KOG4040 NADH:ubiquinone oxidor  32.8      40 0.00087   25.8   2.4   28   33-60    127-154 (186)
 13 PF09964 DUF2198:  Uncharacteri  32.5      25 0.00055   23.4   1.1   45   10-55      2-50  (74)
 14 COG4897 CsbA Uncharacterized p  28.8      45 0.00099   22.4   1.8   46   10-56      3-52  (78)
 15 PF15018 InaF-motif:  TRP-inter  25.6      69  0.0015   18.7   2.0   27   35-61      8-35  (38)
 16 KOG4753 Predicted membrane pro  24.9      33 0.00071   24.9   0.7   29   30-58     81-109 (124)
 17 PF05478 Prominin:  Prominin;    23.2      34 0.00073   30.5   0.5   27   32-58    769-795 (806)
 18 PF03669 UPF0139:  Uncharacteri  20.5      38 0.00082   23.3   0.3   34    9-45     34-67  (103)

No 1  
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=99.94  E-value=4.8e-27  Score=150.96  Aligned_cols=61  Identities=49%  Similarity=0.921  Sum_probs=59.7

Q ss_pred             CCcchHHHHHHHHHhccchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhheeEEeeCcc
Q 034461            1 MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD   61 (94)
Q Consensus         1 M~~~~~~ill~ILai~lPPlaV~l~~G~~~~~~~InllLtllg~iPGiIhA~yvi~~~~~~   61 (94)
                      |++++++++++++|+++||+||++++|+|++|++||++||++||+||+|||+|++.+++|+
T Consensus         1 m~~~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~~r~   61 (63)
T KOG1773|consen    1 MATDCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFRGRE   61 (63)
T ss_pred             CCCcHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEecCC
Confidence            8899999999999999999999999999999999999999999999999999999999987


No 2  
>COG0401 Uncharacterized homolog of Blt101 [Function unknown]
Probab=99.91  E-value=5e-25  Score=138.76  Aligned_cols=55  Identities=49%  Similarity=0.790  Sum_probs=52.4

Q ss_pred             chHHHHHHHHHhccchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhheeEEee
Q 034461            4 CCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFV   58 (94)
Q Consensus         4 ~~~~ill~ILai~lPPlaV~l~~G~~~~~~~InllLtllg~iPGiIhA~yvi~~~   58 (94)
                      +..|++++++|+|+||+||++++|.|++|+++|++||++||+||+|||+|++.++
T Consensus         2 ~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~   56 (56)
T COG0401           2 TLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD   56 (56)
T ss_pred             cHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence            4789999999999999999999999999999999999999999999999999864


No 3  
>PF01679 Pmp3:  Proteolipid membrane potential modulator;  InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane
Probab=99.87  E-value=8.7e-23  Score=125.96  Aligned_cols=50  Identities=54%  Similarity=0.931  Sum_probs=48.1

Q ss_pred             HHHHHHHHhccchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhheeEEe
Q 034461            7 ICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVF   57 (94)
Q Consensus         7 ~ill~ILai~lPPlaV~l~~G~~~~~~~InllLtllg~iPGiIhA~yvi~~   57 (94)
                      |++++++|+++||+||++++| |++|+++|++||++||+||++||+|++++
T Consensus         2 ~~~~~ilai~lPPlaV~~~~g-~~~~~~inl~Ltl~g~iPg~ihA~y~i~~   51 (51)
T PF01679_consen    2 DILLIILAIFLPPLAVFLKKG-CSKDFWINLLLTLLGWIPGVIHALYVIYK   51 (51)
T ss_pred             cHHHHHHHHHcccHHHHHHcC-CchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence            689999999999999999999 99999999999999999999999999864


No 4  
>PF14373 Imm_superinfect:  Superinfection immunity protein
Probab=86.47  E-value=0.71  Score=27.63  Aligned_cols=23  Identities=43%  Similarity=0.658  Sum_probs=19.7

Q ss_pred             ChhHHHHHHH--HHHHhhhhhhhhh
Q 034461           30 TVEFCICLLL--TILGYVPGIIYAL   52 (94)
Q Consensus        30 ~~~~~InllL--tllg~iPGiIhA~   52 (94)
                      ..=+++|++|  |++||+-+.++|+
T Consensus        18 ~~I~~~Nl~lGWT~iGWv~aLiwA~   42 (43)
T PF14373_consen   18 WAIFLLNLLLGWTGIGWVAALIWAL   42 (43)
T ss_pred             hhhHhHHHHHHhHHHHHHHHHHHhc
Confidence            3457889999  9999999999886


No 5  
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=65.67  E-value=3.5  Score=27.02  Aligned_cols=27  Identities=33%  Similarity=0.207  Sum_probs=20.2

Q ss_pred             HHHHHHHHhhhhhhhhheeEEeeCcch
Q 034461           36 CLLLTILGYVPGIIYALYAIVFVDRDE   62 (94)
Q Consensus        36 nllLtllg~iPGiIhA~yvi~~~~~~~   62 (94)
                      |.+-+++.-+|+.|+++|.++...-++
T Consensus        32 ~~LgwIL~gvf~liw~ly~~~~~~l~~   58 (67)
T PLN00082         32 GKLTWILVGVTALIWALYFSYSSTLPE   58 (67)
T ss_pred             chhhhHHHHHHHHHHHHHhheecccCC
Confidence            344477777899999999997665444


No 6  
>PF07123 PsbW:  Photosystem II reaction centre W protein (PsbW);  InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection [].  This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=65.28  E-value=3  Score=30.69  Aligned_cols=26  Identities=38%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             HHHHHHHHhhhhhhhhheeEEeeCcc
Q 034461           36 CLLLTILGYVPGIIYALYAIVFVDRD   61 (94)
Q Consensus        36 nllLtllg~iPGiIhA~yvi~~~~~~   61 (94)
                      |++-+++.-++|.||++|.++...=+
T Consensus       104 ~~LgwIL~gVf~lIWslY~~~~~~l~  129 (138)
T PF07123_consen  104 NLLGWILLGVFGLIWSLYFVYTSTLD  129 (138)
T ss_pred             chhHHHHHHHHHHHHHHHHhhccccC
Confidence            45557888899999999999766544


No 7  
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=58.53  E-value=5.7  Score=29.14  Aligned_cols=26  Identities=35%  Similarity=0.321  Sum_probs=20.1

Q ss_pred             HHHHHHHHhhhhhhhhheeEEeeCcc
Q 034461           36 CLLLTILGYVPGIIYALYAIVFVDRD   61 (94)
Q Consensus        36 nllLtllg~iPGiIhA~yvi~~~~~~   61 (94)
                      |.+-+++.-+++.||++|.++...-+
T Consensus       103 ~~LgwIL~gVf~lIWslYf~~~~~l~  128 (137)
T PLN00092        103 NLLGWILLGVFGLIWSLYFVYTSTLE  128 (137)
T ss_pred             cchhhHHHhHHHHHHHHHheeecccC
Confidence            34557777899999999999876444


No 8  
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=58.33  E-value=5.4  Score=29.01  Aligned_cols=27  Identities=41%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             HHHHHHHHhhhhhhhhheeEEeeCcch
Q 034461           36 CLLLTILGYVPGIIYALYAIVFVDRDE   62 (94)
Q Consensus        36 nllLtllg~iPGiIhA~yvi~~~~~~~   62 (94)
                      |++-+++.-+++.||++|.++...-++
T Consensus        93 ~~LgwIL~gVf~liw~ly~~~~~~l~~  119 (128)
T PLN00077         93 NLLGWILLGVFGLIWSLYTTYTSDLPE  119 (128)
T ss_pred             chhhHHHHhHHHHHHHHHhheecccCC
Confidence            455577778999999999998766543


No 9  
>PF11298 DUF3099:  Protein of unknown function (DUF3099);  InterPro: IPR021449  Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known. 
Probab=56.84  E-value=6.7  Score=25.70  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=16.3

Q ss_pred             HHHHHHHHhccchheeehhhc
Q 034461            7 ICCEILIAILLPPLGVCLKHG   27 (94)
Q Consensus         7 ~ill~ILai~lPPlaV~l~~G   27 (94)
                      .+..+..|+++|++||.+-.+
T Consensus        44 a~~~~~~av~LPwvAVviAN~   64 (73)
T PF11298_consen   44 AWAIIVGAVPLPWVAVVIANA   64 (73)
T ss_pred             HHHHHHHhcccchhheeeccC
Confidence            355677889999999988654


No 10 
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.13  E-value=31  Score=26.44  Aligned_cols=26  Identities=23%  Similarity=0.209  Sum_probs=23.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhheeEE
Q 034461           31 VEFCICLLLTILGYVPGIIYALYAIV   56 (94)
Q Consensus        31 ~~~~InllLtllg~iPGiIhA~yvi~   56 (94)
                      .+.|++++.|+++.+|+.+.-+|+-.
T Consensus        89 ~qa~vDllGtifFLlPfc~l~iy~~~  114 (182)
T COG4665          89 TQAWVDLLGTIFFLLPFCLLVIYLSW  114 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            57899999999999999998888754


No 11 
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=34.08  E-value=12  Score=27.76  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=26.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhheeEEeeCcchhhhhcCcccccc
Q 034461           31 VEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVP   74 (94)
Q Consensus        31 ~~~~InllLtllg~iPGiIhA~yvi~~~~~~~~~~~g~rp~~~~   74 (94)
                      ...++..+||+++|+ |.|+-+|.-.-..=+.....|.||.++.
T Consensus        13 ~p~liD~~lT~~aW~-gfi~l~~~~~~~~~~~~~~~gp~~~~~~   55 (153)
T PRK14584         13 LPRLIDIILTALAWF-GFLFLLVRGLLEMISRAPHMGPIPLRIY   55 (153)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCcccCCcchhHH
Confidence            456899999999997 5555555432222222335677776643


No 12 
>KOG4040 consensus NADH:ubiquinone oxidoreductase, NDUFB8/ASHI subunit [Energy production and conversion]
Probab=32.76  E-value=40  Score=25.83  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhheeEEeeCc
Q 034461           33 FCICLLLTILGYVPGIIYALYAIVFVDR   60 (94)
Q Consensus        33 ~~InllLtllg~iPGiIhA~yvi~~~~~   60 (94)
                      -|-.++.|++|.+|+.|.++|+.-.++.
T Consensus       127 ~w~~~~mcl~g~~~~~l~~~y~~d~~p~  154 (186)
T KOG4040|consen  127 TWNSIVMCLRGLVPMALLAWYFTDEHPR  154 (186)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            4677889999999999999999765553


No 13 
>PF09964 DUF2198:  Uncharacterized protein conserved in bacteria (DUF2198);  InterPro: IPR019242  This family of various hypothetical archaeal proteins has no known function. 
Probab=32.46  E-value=25  Score=23.35  Aligned_cols=45  Identities=24%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             HHHHHhccchheeehhhcCCChhHHHHHHHHHHH----hhhhhhhhheeE
Q 034461           10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILG----YVPGIIYALYAI   55 (94)
Q Consensus        10 l~ILai~lPPlaV~l~~G~~~~~~~InllLtllg----~iPGiIhA~yvi   55 (94)
                      .+++|.++|=+-|.+-.. .+.+-++-.+||+..    ..-|.-|.+|++
T Consensus         2 ~~~~Al~~P~lLVvlFtr-VT~n~~vg~~lt~~Li~ASvykGyt~~~~ii   50 (74)
T PF09964_consen    2 KYLLALFFPCLLVVLFTR-VTYNHYVGTILTVALIAASVYKGYTHTWWII   50 (74)
T ss_pred             HHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            468999999999988777 778888888887654    233444444443


No 14 
>COG4897 CsbA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.76  E-value=45  Score=22.36  Aligned_cols=46  Identities=26%  Similarity=0.331  Sum_probs=33.2

Q ss_pred             HHHHHhccchheeehhhcCCChhHHHHHHHHHHH----hhhhhhhhheeEE
Q 034461           10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILG----YVPGIIYALYAIV   56 (94)
Q Consensus        10 l~ILai~lPPlaV~l~~G~~~~~~~InllLtllg----~iPGiIhA~yvi~   56 (94)
                      .++.|.|+|=+-|.+-.. .+.+=++-++||...    +.-|.-|..|++.
T Consensus         3 ~~~sAlfFPc~LVvLF~r-iT~n~yVa~vLt~vLi~AS~~kgYt~~~wii~   52 (78)
T COG4897           3 QIISALFFPCLLVVLFAR-ITYNRYVALVLTVVLIAASAKKGYTSSFWIIT   52 (78)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccceeeeee
Confidence            357889999988888666 555667777776554    5667778888874


No 15 
>PF15018 InaF-motif:  TRP-interacting helix
Probab=25.62  E-value=69  Score=18.73  Aligned_cols=27  Identities=22%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             HHHHHHHHHh-hhhhhhhheeEEeeCcc
Q 034461           35 ICLLLTILGY-VPGIIYALYAIVFVDRD   61 (94)
Q Consensus        35 InllLtllg~-iPGiIhA~yvi~~~~~~   61 (94)
                      +.++.++++. ++|+.-++|++...+++
T Consensus         8 ~tV~~Yl~~VSl~Ai~LsiYY~f~W~p~   35 (38)
T PF15018_consen    8 LTVVAYLFSVSLAAIVLSIYYIFFWDPD   35 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeCCC
Confidence            3445555554 79999999999877765


No 16 
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=24.89  E-value=33  Score=24.88  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=22.1

Q ss_pred             ChhHHHHHHHHHHHhhhhhhhhheeEEee
Q 034461           30 TVEFCICLLLTILGYVPGIIYALYAIVFV   58 (94)
Q Consensus        30 ~~~~~InllLtllg~iPGiIhA~yvi~~~   58 (94)
                      +.+..+=+++-++.++||.-|-.++-+-+
T Consensus        81 ~~~gv~f~V~G~L~FiPGfYh~riayyA~  109 (124)
T KOG4753|consen   81 RSQGVFFFVLGILLFIPGFYHTRIAYYAY  109 (124)
T ss_pred             CcceEEEehhhhHhcccchheEeeEEEee
Confidence            44566677888899999999988775543


No 17 
>PF05478 Prominin:  Prominin;  InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.18  E-value=34  Score=30.52  Aligned_cols=27  Identities=26%  Similarity=0.339  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHhhhhhhhhheeEEee
Q 034461           32 EFCICLLLTILGYVPGIIYALYAIVFV   58 (94)
Q Consensus        32 ~~~InllLtllg~iPGiIhA~yvi~~~   58 (94)
                      -||..+.++.+.+||++|.|+-+...|
T Consensus       769 ~fWf~l~~c~~~liP~ii~avkL~k~y  795 (806)
T PF05478_consen  769 GFWFGLGWCTLFLIPSIIFAVKLAKYY  795 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999886433


No 18 
>PF03669 UPF0139:  Uncharacterised protein family (UPF0139);  InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=20.52  E-value=38  Score=23.28  Aligned_cols=34  Identities=9%  Similarity=0.397  Sum_probs=26.0

Q ss_pred             HHHHHHhccchheeehhhcCCChhHHHHHHHHHHHhh
Q 034461            9 CEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYV   45 (94)
Q Consensus         9 ll~ILai~lPPlaV~l~~G~~~~~~~InllLtllg~i   45 (94)
                      ..-+|+.+++=.|+++|.+.|+   |+.+++++..|.
T Consensus        34 y~~~L~~~~~m~gl~mr~K~~a---W~al~~s~~S~a   67 (103)
T PF03669_consen   34 YMSFLGMIFSMAGLMMRNKWCA---WAALFFSCQSFA   67 (103)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHH
Confidence            3457888899999999988554   888887777664


Done!