Query 034461
Match_columns 94
No_of_seqs 101 out of 672
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 04:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034461.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034461hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qf8a_ g.41.4.1 (A:) Casein k 17.0 5.7 0.00041 26.9 -2.0 43 44-86 72-116 (173)
2 d1dfup_ b.53.1.1 (P:) Ribosoma 13.5 9.6 0.0007 22.8 -1.4 9 43-51 24-32 (94)
3 d2qam41 g.42.1.1 (4:1-38) Ribo 11.7 20 0.0015 18.9 -0.2 16 52-67 23-38 (38)
4 d1rfya_ a.2.13.1 (A:) Transcri 9.0 50 0.0037 20.1 0.9 13 34-46 76-88 (89)
5 d1lnsa1 a.40.2.1 (A:1-145) X-P 7.2 72 0.0052 20.6 1.1 21 29-49 69-89 (145)
6 d2w6ka1 c.151.1.1 (A:1-139) Co 6.4 1.1E+02 0.0077 19.1 1.6 59 20-79 11-73 (139)
7 d1dp3a_ a.55.1.2 (A:) DNA-bind 5.9 83 0.006 17.5 0.8 14 61-74 20-33 (55)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 5.1 2.2E+02 0.016 13.8 2.2 21 32-52 6-26 (32)
9 d1oedc_ f.36.1.1 (C:) Acetylch 4.9 3E+02 0.022 17.0 3.3 8 12-19 20-27 (260)
10 d1v54g_ f.23.2.1 (G:) Mitochon 4.9 87 0.0063 18.5 0.4 25 30-56 12-36 (84)
No 1
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.02 E-value=5.7 Score=26.92 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=32.8
Q ss_pred hhhhhhhhheeEEeeCcchhhhhcCcccccc--ccccceeeccCC
Q 034461 44 YVPGIIYALYAIVFVDRDEYFDEYRRPLKVP--YTFTFSAFCLPS 86 (94)
Q Consensus 44 ~iPGiIhA~yvi~~~~~~~~~~~g~rp~~~~--~~f~~~~~~~~~ 86 (94)
-+=|+|||=|++..+.=++..+...+..++. -.+-+...++|-
T Consensus 72 ~LYGLIHaRyI~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPi 116 (173)
T d1qf8a_ 72 MLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPI 116 (173)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEE
T ss_pred HHHHHhhhheeecHhHHHHHHHHHhCCCCCCCCCcccCCCccccc
Confidence 3568899999998777777777777777775 677777777773
No 2
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=13.49 E-value=9.6 Score=22.76 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=7.1
Q ss_pred Hhhhhhhhh
Q 034461 43 GYVPGIIYA 51 (94)
Q Consensus 43 g~iPGiIhA 51 (94)
|++||++|.
T Consensus 24 G~vPaViYG 32 (94)
T d1dfup_ 24 NKFPAIIYG 32 (94)
T ss_dssp TEEEEEEEC
T ss_pred CCccEEEEC
Confidence 688998873
No 3
>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}
Probab=11.70 E-value=20 Score=18.87 Aligned_cols=16 Identities=6% Similarity=-0.043 Sum_probs=10.8
Q ss_pred heeEEeeCcchhhhhc
Q 034461 52 LYAIVFVDRDEYFDEY 67 (94)
Q Consensus 52 ~yvi~~~~~~~~~~~g 67 (94)
+|+|++.+|...+++|
T Consensus 23 v~ViCk~nPrHKQRQG 38 (38)
T d2qam41 23 IRVICSAEPKHKQRQG 38 (38)
T ss_dssp CCCCBSSCGGGCCCCC
T ss_pred EEEEeCCCCcccccCC
Confidence 5777777777665554
No 4
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.96 E-value=50 Score=20.08 Aligned_cols=13 Identities=38% Similarity=0.996 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhh
Q 034461 34 CICLLLTILGYVP 46 (94)
Q Consensus 34 ~InllLtllg~iP 46 (94)
-+|-++.++|++|
T Consensus 76 Av~tLi~iLG~iP 88 (89)
T d1rfya_ 76 ALNTLISILGFIP 88 (89)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHhccCC
Confidence 4688888999988
No 5
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=7.23 E-value=72 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHHhhhhhh
Q 034461 29 CTVEFCICLLLTILGYVPGII 49 (94)
Q Consensus 29 ~~~~~~InllLtllg~iPGiI 49 (94)
.+.+.+-|+.|=++||.|++=
T Consensus 69 lt~~vFY~VALQLLgF~~~~D 89 (145)
T d1lnsa1 69 LDWEIFWNIALQLLDFVPNFD 89 (145)
T ss_dssp CCHHHHHHHHHHHTTCCBTTT
T ss_pred CCHHHHHHHHHHHcCCccccc
Confidence 788999999999999988753
No 6
>d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.41 E-value=1.1e+02 Score=19.10 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=40.2
Q ss_pred heeehhhcCCChhHHHHHHHHHHH---hhhhhhhhheeEEeeCcchhhhhcCcccccc-ccccc
Q 034461 20 LGVCLKHGCCTVEFCICLLLTILG---YVPGIIYALYAIVFVDRDEYFDEYRRPLKVP-YTFTF 79 (94)
Q Consensus 20 laV~l~~G~~~~~~~InllLtllg---~iPGiIhA~yvi~~~~~~~~~~~g~rp~~~~-~~f~~ 79 (94)
+++..++| ++.+-+.+.+...+. .-|.-|.++--+-.+..+.-..+..+....| .+|+-
T Consensus 11 vGiGcrrg-~~~e~i~~ai~~al~~~~l~~~~i~~iASid~K~dE~gl~e~a~~l~~pl~~~~~ 73 (139)
T d2w6ka1 11 AGIGCRRG-CSAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVHFLAP 73 (139)
T ss_dssp EEEEECTT-CCHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSSCCHHHHHHHHHHTSCEEEECH
T ss_pred EeeccCCC-CCHHHHHHHHHHHHHHcCCCHHHhhheecccccCCCHHHHHHHHHhCCCeEEECH
Confidence 56677888 899999999987775 4466666666665555555556666666666 55543
No 7
>d1dp3a_ a.55.1.2 (A:) DNA-binding domain (fragment?) of the TraM protein {Escherichia coli [TaxId: 562]}
Probab=5.95 E-value=83 Score=17.51 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=11.5
Q ss_pred chhhhhcCcccccc
Q 034461 61 DEYFDEYRRPLKVP 74 (94)
Q Consensus 61 ~~~~~~g~rp~~~~ 74 (94)
++|..+|.|+.|++
T Consensus 20 e~rr~eGa~~~dvS 33 (55)
T d1dp3a_ 20 ERRRAEGAKSTDVS 33 (55)
T ss_dssp HHHHHHTCCSTTCC
T ss_pred HHHHHcCCCCcCcc
Confidence 46778999999986
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.14 E-value=2.2e+02 Score=13.83 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhh
Q 034461 32 EFCICLLLTILGYVPGIIYAL 52 (94)
Q Consensus 32 ~~~InllLtllg~iPGiIhA~ 52 (94)
-+.|-++-.++|.--|+|+|+
T Consensus 6 vfyivfialffgiavgiifai 26 (32)
T d2e74e1 6 VFYIVFIALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHhhheeeE
Confidence 455556666777778888875
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.95 E-value=3e+02 Score=17.05 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=4.0
Q ss_pred HHHhccch
Q 034461 12 LIAILLPP 19 (94)
Q Consensus 12 ILai~lPP 19 (94)
++++.+||
T Consensus 20 ~~~f~lp~ 27 (260)
T d1oedc_ 20 SLAFYLPA 27 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHeeeCC
Confidence 44455555
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.88 E-value=87 Score=18.55 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhheeEE
Q 034461 30 TVEFCICLLLTILGYVPGIIYALYAIV 56 (94)
Q Consensus 30 ~~~~~InllLtllg~iPGiIhA~yvi~ 56 (94)
+.++|-+ +|+++-+|+++-+.+-.+
T Consensus 12 ~~~lWkk--is~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 12 GARTWRF--LTFGLALPSVALCTLNSW 36 (84)
T ss_dssp CHHHHHH--HHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4677774 567777888887655443
Done!