AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>034462
MASFCRSAIAAGSRSLAARSKTTSQSTLTAKSIFSSFSSSAGPLPRASRVLSALGSVESL
MPLHSAIASARLKSSIAVDSTYWSWLSQDFAVPR

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT4G39300 AT4G39300 AT4G39300	protein from Arabidopsis thaliana	4.8e-23
BLAST match view associations BLAST with NOXY2 NOXY2 NOXY2 AT5G11630	protein from Arabidopsis thaliana	2.1e-06
BLAST match view associations BLAST with AT5G47455 AT5G47455 AT5G47455	protein from Arabidopsis thaliana	3.4e-06
BLAST match view associations BLAST with AT4G17310 AT4G17310 AT4G17310	protein from Arabidopsis thaliana	7.0e-06
BLAST match view associations BLAST with AT3G13674 AT3G13674 AT3G13674	protein from Arabidopsis thaliana	3.0e-05
BLAST match view associations BLAST with AT1G55205 AT1G55205 AT1G55205	protein from Arabidopsis thaliana	3.9e-05
BLAST match view associations BLAST with NFD6 NFD6 NFD6 AT2G20585	protein from Arabidopsis thaliana	5.0e-05
BLAST match view associations BLAST with AT2G15000 AT2G15000 AT2G15000	protein from Arabidopsis thaliana	0.00021
BLAST match view associations BLAST with AT1G70350 AT1G70350 AT1G70350	protein from Arabidopsis thaliana	0.00057

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034462
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2136363 - symbol:AT4G39300 "AT4G39300" species...   266  4.8e-23   1
TAIR|locus:2181925 - symbol:NOXY2 "AT5G11630" species:370...   109  2.1e-06   1
TAIR|locus:505006678 - symbol:AT5G47455 "AT5G47455" speci...   107  3.4e-06   1
TAIR|locus:2130819 - symbol:AT4G17310 species:3702 "Arabi...   104  7.0e-06   1
TAIR|locus:2091596 - symbol:AT3G13674 "AT3G13674" species...    98  3.0e-05   1
TAIR|locus:4010713552 - symbol:AT1G55205 "AT1G55205" spec...    97  3.9e-05   1
TAIR|locus:505006258 - symbol:NFD6 "AT2G20585" species:37...    96  5.0e-05   1
TAIR|locus:2055787 - symbol:AT2G15000 "AT2G15000" species...    90  0.00021   1
TAIR|locus:2016184 - symbol:AT1G70350 "AT1G70350" species...    86  0.00057   1


>TAIR|locus:2136363 [details] [associations]
            symbol:AT4G39300 "AT4G39300" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002687 EMBL:AL161595
            EMBL:AL050351 HOGENOM:HOG000237694 EMBL:AY088247 EMBL:BT004680
            EMBL:AK117138 EMBL:AK176792 EMBL:AK176869 EMBL:AK176902
            IPI:IPI00528987 PIR:T08578 RefSeq:NP_568056.1 UniGene:At.31102
            STRING:Q9T036 EnsemblPlants:AT4G39300.1 GeneID:830086
            KEGG:ath:AT4G39300 TAIR:At4g39300 eggNOG:NOG241281
            InParanoid:Q9T036 OMA:FCRSALM PhylomeDB:Q9T036
            ProtClustDB:CLSN2689835 Genevestigator:Q9T036 Uniprot:Q9T036
        Length = 96

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 56/95 (58%), Positives = 70/95 (73%)

Query:     1 MASFCRSAIAAGSRSLAARSKTTSQSTLTAKXXXXXX--XXXAGPLPRASRVLSALGSVE 58
             MASFCRSA+ AGSR+L +RS+T +Q +L  K           +  +PRASRVLSALGSVE
Sbjct:     1 MASFCRSALMAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSVE 60

Query:    59 SLMPLHSAIASARLKSSIAVDSTYWSWLSQDFAVP 93
             +++PLHSA+ASARL+SSIA DS+ WS LSQ  A P
Sbjct:    61 TMIPLHSAVASARLRSSIAADSSCWSLLSQGLATP 95


>TAIR|locus:2181925 [details] [associations]
            symbol:NOXY2 "AT5G11630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0042742
            "defense response to bacterium" evidence=IMP] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0048364 "root development"
            evidence=IMP] [GO:0050832 "defense response to fungus"
            evidence=IMP] [GO:0071433 "cell wall repair" evidence=IMP]
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0042742 EMBL:AL163814
            HOGENOM:HOG000237694 IPI:IPI00543806 PIR:T48522 RefSeq:NP_196724.3
            UniGene:At.32230 UniGene:At.49008 STRING:Q9LYG7
            EnsemblPlants:AT5G11630.1 GeneID:831035 KEGG:ath:AT5G11630
            TAIR:At5g11630 InParanoid:Q9LYG7 OMA:LCSANPG PhylomeDB:Q9LYG7
            ProtClustDB:CLSN2699113 Genevestigator:Q9LYG7 Uniprot:Q9LYG7
        Length = 93

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 29/80 (36%), Positives = 43/80 (53%)

Query:     1 MASFCRSAIAAGSRSLAARSKTTSQSTLTAKXXXXXXXXXAGPLPRASRVLSALGSVESL 60
             MAS CRS       + +A     ++ ++  K           P P  SR +  LGS++SL
Sbjct:     1 MASRCRSL---SKPAFSAFRSAMNKPSIRPKSASSFIG--VPPSPGFSRPIGQLGSLQSL 55

Query:    61 MPLHSAIASARLKSSIAVDS 80
             +PL+SA+ASARL S + +DS
Sbjct:    56 LPLYSAVASARLTSCLGIDS 75


>TAIR|locus:505006678 [details] [associations]
            symbol:AT5G47455 "AT5G47455" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            GO:GO:0005739 EMBL:CP002688 UniGene:At.66689 IPI:IPI00533845
            RefSeq:NP_568683.2 EnsemblPlants:AT5G47455.4 GeneID:834795
            KEGG:ath:AT5G47455 OMA:RNSPIGT Uniprot:F4JX57
        Length = 116

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 33/91 (36%), Positives = 50/91 (54%)

Query:     1 MASFCRSAIAAGSRSLAARSKTTSQSTLTAKXXXXXXXXXAGPLPRAS--RVLSALGSVE 58
             ++SF +SAI +  R+ +     +S +  ++          A PLPR S  R  S LG V+
Sbjct:    11 VSSF-KSAIRSSFRN-SPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSELGCVQ 68

Query:    59 SLMPLHSAIASARLKSSIAVDSTYWSWLSQD 89
             SL+PLHS +A+ARL S ++  S     L+QD
Sbjct:    69 SLLPLHSTVAAARLTSCLSTTSRSSRALTQD 99


>TAIR|locus:2130819 [details] [associations]
            symbol:AT4G17310 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] EMBL:CP002687
            UniGene:At.26556 EMBL:AY050862 EMBL:BT010622 EMBL:AK175517
            IPI:IPI00546833 RefSeq:NP_193463.1 EnsemblPlants:AT4G17310.1
            GeneID:827444 KEGG:ath:AT4G17310 TAIR:At4g17310 InParanoid:Q949V8
            OMA:CRRFISK PhylomeDB:Q949V8 ProtClustDB:CLSN2680468
            Genevestigator:Q949V8 Uniprot:Q949V8
        Length = 99

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 33/89 (37%), Positives = 43/89 (48%)

Query:     1 MASFCRSAIAAGS-RSLAARSKTTSQSTLTAKXXXXXXXXXAGPLPRASRVLSALGSVES 59
             MAS CR      S  SL +  ++T+ ST  A                 SR  S LG V+S
Sbjct:     1 MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPTRHFSFSRCPSELGCVQS 60

Query:    60 LMPLHSAIASARLKSSIAVDSTYWSWLSQ 88
             L+PLHS +A+ARL S ++  S     LSQ
Sbjct:    61 LLPLHSTVAAARLTSCLSTTSRSSRALSQ 89


>TAIR|locus:2091596 [details] [associations]
            symbol:AT3G13674 "AT3G13674" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009664 "plant-type cell wall
            organization" evidence=RCA] [GO:0042545 "cell wall modification"
            evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP001307
            HOGENOM:HOG000237694 ProtClustDB:CLSN2699057 IPI:IPI00540592
            RefSeq:NP_187979.2 UniGene:At.39372 EnsemblPlants:AT3G13674.1
            GeneID:820574 KEGG:ath:AT3G13674 TAIR:At3g13674 eggNOG:NOG311709
            OMA:SMIPLHS PhylomeDB:Q3EB68 Genevestigator:Q3EB68 Uniprot:Q3EB68
        Length = 95

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query:    44 LPRASRVLSALGSVESLMPLHSAIASARLKSSIAVDSTYWSWLSQDFAVP 93
             L R+SR+   L S   ++PLHSAIAS+RL SS++V+S  W  + Q  ++P
Sbjct:    48 LNRSSRLPVELSS---MIPLHSAIASSRLVSSLSVESKIWGLVPQGLSLP 94


>TAIR|locus:4010713552 [details] [associations]
            symbol:AT1G55205 "AT1G55205" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684 EMBL:AC027034
            HOGENOM:HOG000237694 IPI:IPI00891930 RefSeq:NP_001117497.1
            UniGene:At.49462 UniGene:At.69368 EnsemblPlants:AT1G55205.2
            GeneID:5007805 KEGG:ath:AT1G55205 TAIR:At1g55205 OMA:SVESKSW
            PhylomeDB:B3H4H0 ProtClustDB:CLSN2699057 Genevestigator:B3H4H0
            Uniprot:B3H4H0
        Length = 103

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 29/89 (32%), Positives = 46/89 (51%)

Query:     2 ASFCRSAIAAGSRSLAAR-SKTTSQ-STLTAKXXXXXXXXXAGPLPRASRVLSALGSVES 59
             +  CR  +++   SL  + SKT    S+L +             + ++ R+   L    S
Sbjct:     5 SKICR--LSSKIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVELSCCLS 62

Query:    60 LMPLHSAIASARLKSSIAVDSTYWSWLSQ 88
             ++PLHSAIASARL SS++V+S  W  + Q
Sbjct:    63 MLPLHSAIASARLISSLSVESKSWGLVPQ 91


>TAIR|locus:505006258 [details] [associations]
            symbol:NFD6 "AT2G20585" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC007048 HOGENOM:HOG000237694
            EMBL:AY057495 EMBL:AY085547 EMBL:AY103298 RefSeq:NP_565478.1
            UniGene:At.26972 IntAct:Q93ZJ3 STRING:Q93ZJ3
            EnsemblPlants:AT2G20585.1 GeneID:816581 KEGG:ath:AT2G20585
            TAIR:At2g20585 InParanoid:Q93ZJ3 OMA:SPVEMSS
            ProtClustDB:CLSN2688278 Genevestigator:Q93ZJ3 Uniprot:Q93ZJ3
        Length = 100

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 31/92 (33%), Positives = 47/92 (51%)

Query:     7 SAIAAGSRSLAARSKTTSQSTLTAKXXXXXXXXXAGPLPRA----SRVLSALGS------ 56
             SA+ +G+RS+   + + S +  T +         A PL RA    S +LS L +      
Sbjct:     4 SAVLSGARSMLRAASSRSAAASTGRFASQAKS--APPLFRATARRSPLLSPLRNPVELSF 61

Query:    57 -VESLMPLHSAIASARLKSSIAVDSTYWSWLS 87
              VESL+P HSA ASA + S +++    + WLS
Sbjct:    62 CVESLLPYHSATASALMTSKLSISGQTYGWLS 93


>TAIR|locus:2055787 [details] [associations]
            symbol:AT2G15000 "AT2G15000" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
            process" evidence=RCA] EMBL:CP002685 EMBL:AC005957 IPI:IPI00846837
            RefSeq:NP_001077892.1 RefSeq:NP_001077893.1 UniGene:At.40475
            STRING:A8MR87 EnsemblPlants:AT2G15000.4 EnsemblPlants:AT2G15000.5
            GeneID:815989 KEGG:ath:AT2G15000 TAIR:At2g15000 eggNOG:NOG243935
            HOGENOM:HOG000237694 OMA:MAWRNAG PhylomeDB:A8MR87
            ProtClustDB:CLSN2688123 Genevestigator:A8MR87 Uniprot:A8MR87
        Length = 101

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query:     3 SFCRSAIAAGSRSLAARSKTTSQSTLTAKXXXXXXXXXAGPLPRASRVLSALGSVESLMP 62
             S  RS ++A +RS + RS TT+   L                P  SR L ALG  +S +P
Sbjct:     8 SAARSFVSATARSPSLRSPTTALPRLRPPQSSLPSRRFTFSSP--SRNLGALGCTQSFLP 65

Query:    63 LHSAIASARLKSSIAVD 79
             L+S +A+++L S + V+
Sbjct:    66 LYSVVATSQLTSHLNVN 82


>TAIR|locus:2016184 [details] [associations]
            symbol:AT1G70350 "AT1G70350" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 EMBL:BT010485 EMBL:AK175590
            EMBL:AK176706 IPI:IPI00526159 RefSeq:NP_177192.2 UniGene:At.10654
            IntAct:Q6NQH1 EnsemblPlants:AT1G70350.1 GeneID:843371
            KEGG:ath:AT1G70350 TAIR:At1g70350 InParanoid:Q6NQH1 OMA:SCLSEGF
            ProtClustDB:CLSN2918452 Genevestigator:Q6NQH1 Uniprot:Q6NQH1
        Length = 105

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query:    48 SRVLSALGSVESLMPLHSAIASARLKSSIAVDSTYWSWLSQDFA 91
             SRV   L +  SL+PLHS  ASA L S +++ +  WS LS+ FA
Sbjct:    59 SRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEGFA 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.119   0.334    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        85   0.00091  102 3  10 23  0.41    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.98u 0.20s 11.18t   Elapsed:  00:00:00
  Total cpu time:  10.98u 0.20s 11.18t   Elapsed:  00:00:00
  Start:  Thu May  9 16:09:49 2013   End:  Thu May  9 16:09:49 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data