Query 034462
Match_columns 94
No_of_seqs 100 out of 112
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 04:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034462.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034462hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ixva_ d.211.1.1 (A:) 26S pro 6.8 73 0.0053 18.9 0.9 10 61-70 2-11 (229)
2 d1b12a_ b.87.1.2 (A:) Type 1 s 6.3 39 0.0028 21.9 -0.7 13 77-89 202-214 (247)
3 d1n11a_ d.211.1.1 (A:) Ankyrin 6.1 78 0.0057 20.4 0.8 10 60-69 1-10 (408)
4 d1k1aa_ d.211.1.1 (A:) bcl-3 { 3.7 1.6E+02 0.012 16.2 0.9 11 60-70 4-14 (228)
5 d2pf5a1 d.169.1.4 (A:1-95) TSG 3.2 1.5E+02 0.011 17.5 0.5 15 76-90 42-56 (95)
6 d1myoa_ d.211.1.1 (A:) Myotrop 2.4 2.3E+02 0.016 15.5 0.6 13 58-70 67-79 (118)
7 d1iknd_ d.211.1.1 (D:) I-kappa 2.3 2.6E+02 0.019 16.4 0.8 9 61-69 4-12 (221)
8 d2j9ga2 c.30.1.1 (A:1-114) Bio 2.3 5E+02 0.037 15.5 2.3 34 56-90 56-89 (114)
9 d2fo1e1 d.211.1.1 (E:1021-1297 2.2 3.1E+02 0.023 16.1 1.0 7 62-68 3-9 (277)
10 d2gycn1 b.34.5.6 (N:1-114) Rib 2.1 1.5E+02 0.011 18.5 -0.6 12 55-66 67-78 (114)
No 1
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.82 E-value=73 Score=18.87 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=6.9
Q ss_pred cchhHHHHHH
Q 034462 61 MPLHSAIASA 70 (94)
Q Consensus 61 lPLHSAvAsA 70 (94)
.|||.|+...
T Consensus 2 ~pLh~A~~~g 11 (229)
T d1ixva_ 2 YPLHQACMEN 11 (229)
T ss_dssp CHHHHHHHHT
T ss_pred HhHHHHHHcC
Confidence 4777777764
No 2
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=6.35 E-value=39 Score=21.89 Aligned_cols=13 Identities=31% Similarity=0.961 Sum_probs=8.8
Q ss_pred cccCccceecccc
Q 034462 77 AVDSTYWSWLSQD 89 (94)
Q Consensus 77 sv~s~s~~~Lsqg 89 (94)
|.|||.||-+|+.
T Consensus 202 S~DSR~wG~Vp~~ 214 (247)
T d1b12a_ 202 SADSRYWGFVPEA 214 (247)
T ss_dssp CCCHHHHCCEEGG
T ss_pred CccccccCcCCHH
Confidence 5677777776665
No 3
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.13 E-value=78 Score=20.36 Aligned_cols=10 Identities=50% Similarity=0.564 Sum_probs=6.3
Q ss_pred ccchhHHHHH
Q 034462 60 LMPLHSAIAS 69 (94)
Q Consensus 60 llPLHSAvAs 69 (94)
|.|||.|+..
T Consensus 1 ~TpL~~Aa~~ 10 (408)
T d1n11a_ 1 LTPLHVASFM 10 (408)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHC
Confidence 4577777653
No 4
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.75 E-value=1.6e+02 Score=16.23 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=7.4
Q ss_pred ccchhHHHHHH
Q 034462 60 LMPLHSAIASA 70 (94)
Q Consensus 60 llPLHSAvAsA 70 (94)
..|||.|+...
T Consensus 4 ~TpLh~A~~~g 14 (228)
T d1k1aa_ 4 DTPLHIAVVQG 14 (228)
T ss_dssp CCHHHHHHHTT
T ss_pred ccHHHHHHHcC
Confidence 46888887654
No 5
>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=1.5e+02 Score=17.48 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=10.9
Q ss_pred ccccCccceeccccc
Q 034462 76 IAVDSTYWSWLSQDF 90 (94)
Q Consensus 76 Lsv~s~s~~~Lsqg~ 90 (94)
...|-=++|||.+|.
T Consensus 42 ~G~~~C~~GWl~d~~ 56 (95)
T d2pf5a1 42 IGFHVCAAGWMAKGR 56 (95)
T ss_dssp TTCCCCSCEECGGGE
T ss_pred cCcccccccccCCCe
Confidence 356667788998875
No 6
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.40 E-value=2.3e+02 Score=15.51 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=9.3
Q ss_pred hhccchhHHHHHH
Q 034462 58 ESLMPLHSAIASA 70 (94)
Q Consensus 58 eSllPLHSAvAsA 70 (94)
+..-|||.|+...
T Consensus 67 ~g~tpLh~A~~~~ 79 (118)
T d1myoa_ 67 HHITPLLSAVYEG 79 (118)
T ss_dssp SCSCHHHHHHTTT
T ss_pred ccccchhhhhhcC
Confidence 3578999987643
No 7
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.34 E-value=2.6e+02 Score=16.39 Aligned_cols=9 Identities=44% Similarity=0.301 Sum_probs=4.7
Q ss_pred cchhHHHHH
Q 034462 61 MPLHSAIAS 69 (94)
Q Consensus 61 lPLHSAvAs 69 (94)
-|||-|+..
T Consensus 4 t~Lh~A~~~ 12 (221)
T d1iknd_ 4 SFLHLAIIH 12 (221)
T ss_dssp CTTHHHHHT
T ss_pred hHHHHHHHc
Confidence 356655543
No 8
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.31 E-value=5e+02 Score=15.46 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=28.8
Q ss_pred hhhhccchhHHHHHHHhhhhccccCccceeccccc
Q 034462 56 SVESLMPLHSAIASARLKSSIAVDSTYWSWLSQDF 90 (94)
Q Consensus 56 cveSllPLHSAvAsArLtS~Lsv~s~s~~~Lsqg~ 90 (94)
..++.|-...-+..|+-+-+-+|.. .||-|||.-
T Consensus 56 ~~~sYl~~~~Ii~~A~~~~~dAiHP-GyGFLSEn~ 89 (114)
T d2j9ga2 56 SVKSYLNIPAIISAAEITGAVAIHP-GYGFLSENA 89 (114)
T ss_dssp GGGTTTCHHHHHHHHHHHTCSEEEC-CSSTTTTCH
T ss_pred hhhhhcCHHHHHHHHHHhCCceeec-chhhhhhhH
Confidence 3567888888899999999999999 899999853
No 9
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.16 E-value=3.1e+02 Score=16.13 Aligned_cols=7 Identities=14% Similarity=0.358 Sum_probs=2.6
Q ss_pred chhHHHH
Q 034462 62 PLHSAIA 68 (94)
Q Consensus 62 PLHSAvA 68 (94)
|||-+++
T Consensus 3 p~~~~~~ 9 (277)
T d2fo1e1 3 PIKLHTE 9 (277)
T ss_dssp CCHHHHH
T ss_pred hHHHHHH
Confidence 3343333
No 10
>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}
Probab=2.14 E-value=1.5e+02 Score=18.46 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=10.0
Q ss_pred hhhhhccchhHH
Q 034462 55 GSVESLMPLHSA 66 (94)
Q Consensus 55 ~cveSllPLHSA 66 (94)
..||-..||||-
T Consensus 67 vGVEr~fpl~SP 78 (114)
T d2gycn1 67 EGVERVFQTHSP 78 (114)
T ss_dssp SSSCCCCCCCSS
T ss_pred ccEEEEEEeCCC
Confidence 469999999984
Done!