BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034463
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 61/63 (96%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+LLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL
Sbjct: 42 KLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVL 101
Query: 91 RNP 93
+NP
Sbjct: 102 KNP 104
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/63 (88%), Positives = 61/63 (96%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 50 KLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVL 109
Query: 91 RNP 93
RNP
Sbjct: 110 RNP 112
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 62/63 (98%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VL
Sbjct: 51 KLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVL 110
Query: 91 RNP 93
RNP
Sbjct: 111 RNP 113
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 62/63 (98%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VL
Sbjct: 51 KLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVL 110
Query: 91 RNP 93
RNP
Sbjct: 111 RNP 113
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3
SV=1
Length = 118
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 62/63 (98%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VL
Sbjct: 51 KLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVL 110
Query: 91 RNP 93
RNP
Sbjct: 111 RNP 113
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 60/63 (95%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V+
Sbjct: 51 KLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVV 110
Query: 91 RNP 93
+NP
Sbjct: 111 KNP 113
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+LL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+
Sbjct: 52 KLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVV 110
Query: 91 RNP 93
R P
Sbjct: 111 RIP 113
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%), Gaps = 7/63 (11%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
+++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+FLRGDSVI+VL
Sbjct: 53 KIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKLFLRGDSVIVVL 105
Query: 91 RNP 93
+ P
Sbjct: 106 KTP 108
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 89
+L GR+ A+D H NMVL + E+ T K KAL + + +F+RGDSVI++
Sbjct: 31 ELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLFVRGDSVILI 88
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 89
+L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V++V
Sbjct: 38 ELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 89
+L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V++V
Sbjct: 38 ELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 89
+L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V++V
Sbjct: 38 ELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 31 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 89
+L G++ A+D+H NM+L +V E + K + ++ + N R I +F+RGD VI++
Sbjct: 33 ELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIR-NIKRNIKMLFVRGDGVILI 90
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 34 GRVRAFDRHCNMVLENVREMWT---ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 90
G + AFD+H N++L +V E + LP T + P K R+ ++F++GD+V+ V+
Sbjct: 196 GYIIAFDKHMNIILRDVEEEYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 32 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 89
L+G ++AFD HCN+VL + E +L + + R +F+RGD+V ++
Sbjct: 26 LVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVFIRGDTVTLI 76
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 8 FSFRNSQTTLMLFCFWALEFIVLQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 67
F+F QT + + W E I +++ G++ FD N+V++ E+ + GK+
Sbjct: 18 FNFLQQQTPVTI---WLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPV---NSADGKED- 70
Query: 68 LPVNKDRFISKMFLRGDSVIIV 89
V K + K+ L+GD++ ++
Sbjct: 71 --VEKGTPLGKILLKGDNITLI 90
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 23 WALEFIVLQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 82
W E I L++ G + FD + N+VL++ E++ + + R + ++ L+
Sbjct: 33 WLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVK-------------TRQRRNLGRIMLK 79
Query: 83 GDSVIIV 89
GD++ ++
Sbjct: 80 GDNITLI 86
>sp|P39869|NIA_LOTJA Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1
Length = 900
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 20 FCFWALEFIVLQLLGR----VRAFDRHCNMVLENV 50
+CFW+LE VL LLG VRA+D N EN+
Sbjct: 412 WCFWSLEVEVLDLLGTKEIAVRAWDEALNTQPENL 446
>sp|P39866|NIA2_PHAVU Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1
Length = 890
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 20 FCFWALEFIVLQLLGR----VRAFDRHCNMVLENV 50
+CFW+LE VL LLG VRA+D N EN+
Sbjct: 405 WCFWSLEVEVLDLLGTKEIAVRAWDEGLNTQPENL 439
>sp|A6U971|LEXA_SINMW LexA repressor OS=Sinorhizobium medicae (strain WSM419) GN=lexA
PE=3 SV=1
Length = 238
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 28 IVLQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 87
+V+ ++GR+ A + + N+ ++ + G G+ AL + D I L GD+VI
Sbjct: 113 VVVPVMGRI-AAGVPISAIQNNMHDISVPIEMIGSGEHYALEIKGDSMIEAGILDGDTVI 171
Query: 88 I 88
I
Sbjct: 172 I 172
>sp|P23312|NIA_SPIOL Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=2 SV=1
Length = 926
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 20 FCFWALEFIVLQLLGR----VRAFDRHCN 44
+CFW+LE VL LLG VRA+D N
Sbjct: 444 WCFWSLEVEVLDLLGAKEIGVRAWDESLN 472
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 21 CFWALEFIVLQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 80
W E ++L G++R FD N+VL++ ++ + N R + ++
Sbjct: 27 SIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAK--------------NNKRELGRIL 72
Query: 81 LRGDSVIIV 89
L+GD++ ++
Sbjct: 73 LKGDNITLI 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.143 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,415,059
Number of Sequences: 539616
Number of extensions: 1024116
Number of successful extensions: 2683
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2663
Number of HSP's gapped (non-prelim): 39
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)