BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034465
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L6H|A Chain A, Solution Structure Of Plant Nsltp2 Purified From Rice
          (Oryza Sativa)
          Length = 69

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 27 VTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVAST 86
            C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+
Sbjct: 1  AGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSS 60

Query: 87 CGTPFPKC 94
          CG   P C
Sbjct: 61 CGIALPTC 68


>pdb|1N89|A Chain A, Solution Structure Of A Liganded Type 2 Wheat
          Non-Specific Lipid Transfer Protein
 pdb|1TUK|A Chain A, Crystal Stucture Of Liganted Type 2 Non Specific Lipid
          Transfer Protein From Wheat
          Length = 67

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%)

Query: 29 CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCG 88
          C  +QL+ C SAI S   PS  CC  ++ Q+ C CQY ++P+  ++I +P+AR   ++CG
Sbjct: 2  CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCG 61

Query: 89 TPFPKC 94
             P C
Sbjct: 62 LAVPHC 67


>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
           Deaminase, Mutant R115e
          Length = 193

 Score = 31.2 bits (69), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 12  LVVLLLAAETQVSVAVTCSPTQLS---SCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRN 68
           L  +L AAE   S+        LS    C  AI  S     + C    + KP     LRN
Sbjct: 107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRN 166

Query: 69  PSLRKF------INTPNARRVASTCG 88
             +  F      +N  N   +   CG
Sbjct: 167 AGIEVFNVPKKNLNKLNWENINEFCG 192


>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling
          Protein Dir1 From Arabidopsis Taliana
          Length = 77

 Score = 29.6 bits (65), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 30 SPTQLSSCVSAITSSTP--PSRLCCSKIKEQK-PCLCQYLRNPSLRKFINTPN-ARRVAS 85
          S  +L+ C  A++   P  PS+ CC+ ++     CLC Y  +P L  F   P  A  +  
Sbjct: 8  SQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPK 67

Query: 86 TCG 88
           CG
Sbjct: 68 QCG 70


>pdb|2D68|A Chain A, Structure Of The N-Terminal Domain Of Fop (Fgfr1op)
          Protein
 pdb|2D68|B Chain B, Structure Of The N-Terminal Domain Of Fop (Fgfr1op)
          Protein
          Length = 82

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 66 LRNPSLRKFINTPNARRVAS 85
          L N SL+KF+NT + R VAS
Sbjct: 4  LVNESLKKFLNTKDGRLVAS 23


>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
          Length = 93

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 26 AVTCSP--TQLSSCVSAITSSTPPSRLCCSKIKE-----------QKPCLCQYLRNPSLR 72
          A++C    + LS C++ +T    PS  CC  +K+           Q  C C      S+ 
Sbjct: 1  AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60

Query: 73 KFINTPNARRVASTCGTPFP 92
          K +NT NA  +   CG   P
Sbjct: 61 K-LNTNNAAALPGKCGVNIP 79


>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
 pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
 pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
          Length = 670

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 43  SSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPK 93
           SS+PP  L         PCLC Y   P     + + N + V     TP PK
Sbjct: 596 SSSPPKTL---------PCLCMYAMTPERVHRLRSNNVKEVTVCSSTPLPK 637


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.128    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,284,837
Number of Sequences: 62578
Number of extensions: 60354
Number of successful extensions: 116
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 11
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)