Query 034465
Match_columns 94
No_of_seqs 101 out of 958
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n89_A Lipid transfer protein; 99.8 9.9E-22 3.4E-26 115.4 1.5 67 28-94 1-67 (67)
2 1l6h_A LTP2, non-specific lipi 99.8 1.1E-21 3.8E-26 115.7 -1.8 67 28-94 2-68 (69)
3 2rkn_A DIR1 protein, AT5G48485 99.7 5.3E-19 1.8E-23 106.0 1.6 69 26-94 2-77 (77)
4 2alg_A Non-specific lipid tran 99.6 1E-16 3.4E-21 99.0 -0.9 65 27-92 2-79 (92)
5 2ljo_A Non-specific lipid-tran 99.6 3.2E-16 1.1E-20 97.1 0.1 67 26-92 1-79 (93)
6 1bwo_A NS-LTP1, nonspecific li 99.5 1.3E-15 4.6E-20 93.6 -0.2 64 28-92 2-78 (90)
7 1siy_A LTP 1, NS-LTP1, nonspec 99.5 3.3E-15 1.1E-19 92.0 1.3 64 28-92 2-78 (91)
8 1afh_A Maize nonspecific lipid 99.5 1.9E-15 6.7E-20 93.4 0.2 65 27-92 2-80 (93)
9 1t12_A LTP 1, nonspecific lipi 99.4 1E-14 3.5E-19 89.9 -1.0 64 27-92 2-78 (91)
10 1hyp_A Hydrophobic protein fro 93.2 0.036 1.2E-06 32.9 1.6 62 27-93 6-73 (80)
11 3ob4_A Conglutin, maltose ABC 90.3 0.014 4.7E-07 43.9 -3.3 46 49-94 429-488 (500)
12 1s6d_A Albumin 8; all helix, f 89.2 0.28 9.4E-06 30.1 2.7 61 34-94 21-101 (103)
13 2ds2_B Sweet protein mabinlin- 87.0 0.081 2.8E-06 30.6 -0.7 46 49-94 8-67 (72)
14 1w2q_A Conglutin, ARA H 6; all 81.0 0.52 1.8E-05 30.0 1.1 64 27-90 14-112 (127)
15 1pnb_B Napin BNIB; napin IA an 78.3 0.094 3.2E-06 30.4 -2.9 48 47-94 10-70 (75)
16 1psy_A 2S albumin, RICC3; albu 77.8 0.31 1.1E-05 30.9 -0.8 63 27-89 16-116 (125)
17 1sm7_A Recombinant IB pronapin 74.0 0.39 1.3E-05 29.5 -1.1 60 33-92 14-101 (109)
18 1hss_A 0.19 alpha-amylase inhi 59.5 0.63 2.2E-05 29.6 -2.3 60 33-92 16-104 (124)
19 1bea_A Bifunctional amylase/se 57.7 2.2 7.5E-05 27.1 0.0 60 33-92 16-109 (127)
20 1b1u_A Protein (alpha-amylase/ 55.8 1.1 3.8E-05 28.3 -1.6 61 33-93 16-109 (122)
21 2lvf_A 2S albumin; allergen, c 47.9 9.7 0.00033 23.4 1.9 62 33-94 17-105 (114)
No 1
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=99.82 E-value=9.9e-22 Score=115.36 Aligned_cols=67 Identities=39% Similarity=0.968 Sum_probs=61.6
Q ss_pred CCCccccccchhhhcCCCCCChhHHHhccccCCeecccccCccccCCCCHHHHHHHhcccCCCCCCC
Q 034465 28 TCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 94 (94)
Q Consensus 28 ~C~~~~l~pC~~~~~~~~~Ps~~CC~~vk~~~~ClC~~~~~~~~~~~i~~~~a~~lp~~Cgv~~p~C 94 (94)
+|+..+|.||++|++++.+||.+||++||++..|+|+|++++.+..+||.++|++||++||+++|+|
T Consensus 1 ~C~~~~L~pC~~~v~~~~~Ps~~CC~~lk~~~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P~C 67 (67)
T 1n89_A 1 ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67 (67)
T ss_dssp CCCSSTTHHHHHHHTTCCCCCHHHHHHHHHHSSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCSCC
T ss_pred CCChhhcccCHHHHcCCCCCCHHHHHhhCCCCCCCCccccCcccccccCHHHHHHHHHHcCCCCCCC
Confidence 4776789999999998888999999999998899999999988765799999999999999999988
No 2
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=99.80 E-value=1.1e-21 Score=115.75 Aligned_cols=67 Identities=37% Similarity=0.999 Sum_probs=62.0
Q ss_pred CCCccccccchhhhcCCCCCChhHHHhccccCCeecccccCccccCCCCHHHHHHHhcccCCCCCCC
Q 034465 28 TCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 94 (94)
Q Consensus 28 ~C~~~~l~pC~~~~~~~~~Ps~~CC~~vk~~~~ClC~~~~~~~~~~~i~~~~a~~lp~~Cgv~~p~C 94 (94)
+|+..+|.||++|++++.+||.+||++||++..|+|+|++++.+..+||.++|++||++||+++|+|
T Consensus 2 ~C~~~~L~pC~~~v~~~~~Ps~~CC~~lk~~~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P~C 68 (69)
T 1l6h_A 2 GCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 68 (69)
T ss_dssp CSTTTTHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSCCC
T ss_pred CCChhhcccCHHHHcCCCCCCHHHHHhhCCCCCCCCccccCcccccccCHHHHHHHHHHcCCCCCCC
Confidence 5877889999999998888999999999998899999999888766799999999999999999998
No 3
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=99.73 E-value=5.3e-19 Score=105.98 Aligned_cols=69 Identities=29% Similarity=0.720 Sum_probs=58.9
Q ss_pred ccCCCc--cccccchhhhcCC--CCCChhHHHhccccC-CeecccccCccccCC-CCHHHHHHHhcccCCCCC-CC
Q 034465 26 AVTCSP--TQLSSCVSAITSS--TPPSRLCCSKIKEQK-PCLCQYLRNPSLRKF-INTPNARRVASTCGTPFP-KC 94 (94)
Q Consensus 26 ~~~C~~--~~l~pC~~~~~~~--~~Ps~~CC~~vk~~~-~ClC~~~~~~~~~~~-i~~~~a~~lp~~Cgv~~p-~C 94 (94)
..+|++ .+|.||++|++++ .+||.+||+++|+.| .|+|.+++++.+..+ ||.++|++||++||+++| +|
T Consensus 2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~~~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv~~p~~C 77 (77)
T 2rkn_A 2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 77 (77)
T ss_dssp CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTCCHHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTCSCCCCC
T ss_pred cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhcCcCCcCcccCCcchhhcCcCHHHHHHHHHHcCCCCCCCC
Confidence 467887 3689999999974 579999999999877 999999976555543 999999999999999988 77
No 4
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=99.57 E-value=1e-16 Score=99.03 Aligned_cols=65 Identities=25% Similarity=0.627 Sum_probs=55.3
Q ss_pred cCCCc--cccccchhhhcCCCCCChhHHHhccc---------c-C-CeecccccCccccCCCCHHHHHHHhcccCCCCC
Q 034465 27 VTCSP--TQLSSCVSAITSSTPPSRLCCSKIKE---------Q-K-PCLCQYLRNPSLRKFINTPNARRVASTCGTPFP 92 (94)
Q Consensus 27 ~~C~~--~~l~pC~~~~~~~~~Ps~~CC~~vk~---------~-~-~ClC~~~~~~~~~~~i~~~~a~~lp~~Cgv~~p 92 (94)
.+|++ .+|.||++|++++.+|+++||+++|+ + + .|+|.+...+.++ +||.++|++||++||+++|
T Consensus 2 ~~C~~v~~~L~pCl~y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A~~LP~~Cgv~~p 79 (92)
T 2alg_A 2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNAAALPGKCGVSIP 79 (92)
T ss_dssp CCHHHHHHHHGGGHHHHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHHHHHHHHTTCCCS
T ss_pred CChHHHHHhccCcHHHHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHHHHHHHHcCCCCC
Confidence 56877 36999999999877888999999998 2 2 7999877556665 7999999999999999976
No 5
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=99.55 E-value=3.2e-16 Score=97.08 Aligned_cols=67 Identities=30% Similarity=0.661 Sum_probs=55.0
Q ss_pred ccCCCc--cccccchhhhcCCCCCChhHHHhcccc--------C-CeecccccCccc-cCCCCHHHHHHHhcccCCCCC
Q 034465 26 AVTCSP--TQLSSCVSAITSSTPPSRLCCSKIKEQ--------K-PCLCQYLRNPSL-RKFINTPNARRVASTCGTPFP 92 (94)
Q Consensus 26 ~~~C~~--~~l~pC~~~~~~~~~Ps~~CC~~vk~~--------~-~ClC~~~~~~~~-~~~i~~~~a~~lp~~Cgv~~p 92 (94)
+++|++ ..|.||++|++++..|++.||+++|+. | +|+|+.+|+..- ...||.++|..||++||+++|
T Consensus 1 AisC~~v~~~L~pCl~Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p 79 (93)
T 2ljo_A 1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP 79 (93)
T ss_dssp CCSSHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHhHHHHHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence 367887 369999999998878999999999982 3 688888976322 125999999999999999987
No 6
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=99.50 E-value=1.3e-15 Score=93.62 Aligned_cols=64 Identities=27% Similarity=0.634 Sum_probs=50.9
Q ss_pred CCCc--cccccchhhhcCCCCCChhHHHhcccc----------C-CeecccccCccccCCCCHHHHHHHhcccCCCCC
Q 034465 28 TCSP--TQLSSCVSAITSSTPPSRLCCSKIKEQ----------K-PCLCQYLRNPSLRKFINTPNARRVASTCGTPFP 92 (94)
Q Consensus 28 ~C~~--~~l~pC~~~~~~~~~Ps~~CC~~vk~~----------~-~ClC~~~~~~~~~~~i~~~~a~~lp~~Cgv~~p 92 (94)
+|++ .+|.||++|++++.+|+.+||+++|+. + .|+|.+.....++ +||.++|++||++||+++|
T Consensus 2 ~C~~v~~~L~pCl~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~~LP~~C~v~~p 78 (90)
T 1bwo_A 2 DCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNARSIPPKCGVNLP 78 (90)
T ss_dssp CHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHHHTHHHHHTCCCS
T ss_pred CHHHHHHhhcccHHHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHHHHHHHHcCCCCC
Confidence 5666 368999999998767999999999982 2 7999433223343 6999999999999999976
No 7
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=99.50 E-value=3.3e-15 Score=91.98 Aligned_cols=64 Identities=27% Similarity=0.586 Sum_probs=50.9
Q ss_pred CCCc--cccccchhhhcCCCCCChhHHHhcccc--------C---CeecccccCccccCCCCHHHHHHHhcccCCCCC
Q 034465 28 TCSP--TQLSSCVSAITSSTPPSRLCCSKIKEQ--------K---PCLCQYLRNPSLRKFINTPNARRVASTCGTPFP 92 (94)
Q Consensus 28 ~C~~--~~l~pC~~~~~~~~~Ps~~CC~~vk~~--------~---~ClC~~~~~~~~~~~i~~~~a~~lp~~Cgv~~p 92 (94)
+|++ .+|.||++|++++.+|+.+||+++|+. | .|+|.......++ +||.++|++||++||+++|
T Consensus 2 ~C~~v~~~L~pCl~yv~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~-~in~~~A~~LP~~Cgv~~p 78 (91)
T 1siy_A 2 TCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP 78 (91)
T ss_dssp CTTTTHHHHHHHHHHHTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS-SCCHHHHHHHHHHHTCCCS
T ss_pred CHHHHHHhccCcHHHHhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC-CcCHHHHHHHHHHcCCCCC
Confidence 5877 368999999998767999999999983 2 6999632113332 5999999999999999976
No 8
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=99.50 E-value=1.9e-15 Score=93.36 Aligned_cols=65 Identities=26% Similarity=0.620 Sum_probs=53.0
Q ss_pred cCCCc--cccccchhhhcCCC-CCChhHHHhcccc--------C---CeecccccCccccCCCCHHHHHHHhcccCCCCC
Q 034465 27 VTCSP--TQLSSCVSAITSST-PPSRLCCSKIKEQ--------K---PCLCQYLRNPSLRKFINTPNARRVASTCGTPFP 92 (94)
Q Consensus 27 ~~C~~--~~l~pC~~~~~~~~-~Ps~~CC~~vk~~--------~---~ClC~~~~~~~~~~~i~~~~a~~lp~~Cgv~~p 92 (94)
.+|++ ..|.||++|++++. +|+.+||+++|+. | .|+|.+...+.++ +||.++|+.||++||+++|
T Consensus 2 ~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A~~LP~~C~v~~p 80 (93)
T 1afh_A 2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNAASIPSKCGVSIP 80 (93)
T ss_dssp CSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHCCCS
T ss_pred CChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHHHHHHHHcCCCCC
Confidence 56887 36999999999865 6888999999984 2 6999655445554 6999999999999999976
No 9
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=99.41 E-value=1e-14 Score=89.87 Aligned_cols=64 Identities=28% Similarity=0.648 Sum_probs=50.5
Q ss_pred cCCCc--cccccchhhhcCCCCCChhHHHhcccc----------C-CeecccccCccccCCCCHHHHHHHhcccCCCCC
Q 034465 27 VTCSP--TQLSSCVSAITSSTPPSRLCCSKIKEQ----------K-PCLCQYLRNPSLRKFINTPNARRVASTCGTPFP 92 (94)
Q Consensus 27 ~~C~~--~~l~pC~~~~~~~~~Ps~~CC~~vk~~----------~-~ClC~~~~~~~~~~~i~~~~a~~lp~~Cgv~~p 92 (94)
.+|++ ..|.||++|++++.+|+ +||+++|+. + .|+|.....+.++ .||.++|+.||++||+++|
T Consensus 2 ~~C~~v~~~L~pCl~y~~~~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~~LP~~C~v~~p 78 (91)
T 1t12_A 2 ITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS-GINLGKAAGLPSTCGVNIP 78 (91)
T ss_dssp CCHHHHHHHTHHHHHHHTTSSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHTTCCCS
T ss_pred CChHHHHHhccCcHHHHcCCCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC-CcChhHHHHHHHHcCCCCC
Confidence 56777 36999999999865577 999999982 3 7999532114444 6999999999999999976
No 10
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=93.21 E-value=0.036 Score=32.86 Aligned_cols=62 Identities=29% Similarity=0.647 Sum_probs=43.3
Q ss_pred cCCCccccccchhhhcCCCCCChhHHHhcccc---C--CeecccccCccccCCCCHHHHHH-HhcccCCCCCC
Q 034465 27 VTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQ---K--PCLCQYLRNPSLRKFINTPNARR-VASTCGTPFPK 93 (94)
Q Consensus 27 ~~C~~~~l~pC~~~~~~~~~Ps~~CC~~vk~~---~--~ClC~~~~~~~~~~~i~~~~a~~-lp~~Cgv~~p~ 93 (94)
.+|. ++..|..-+.+...|..+||.-++.- | .|+|..+|- +.. +|.+-..+ +...||..+|+
T Consensus 6 ~~CP--kLgvCanvL~g~~~~~~~CC~Ll~GL~dleAAvCLCtaik~--Lgi-lnlpv~L~llln~Cgk~~P~ 73 (80)
T 1hyp_A 6 PSCP--DLSICLNILGGSLGTVDDCCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYPS 73 (80)
T ss_dssp CCSC--CCGGGGGGGGTCCTTHHHHHHHHHTSCHHHHHHHHHHHHHH--HTC-SCHHHHHHHHHHHTTCSSCC
T ss_pred CCCC--chhHHHHHhCcCCCCCCccchhhhCcchhhhhhhhhhhccc--cce-eecChhHHHHHHHhCCcCcC
Confidence 3565 78889887754334667899999882 3 799988862 332 56665555 56789999874
No 11
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=90.26 E-value=0.014 Score=43.93 Aligned_cols=46 Identities=24% Similarity=0.658 Sum_probs=31.6
Q ss_pred hhHHHhccccC---CeecccccC---cccc------CC-CCHHHHHHHhcccCCCCC-CC
Q 034465 49 RLCCSKIKEQK---PCLCQYLRN---PSLR------KF-INTPNARRVASTCGTPFP-KC 94 (94)
Q Consensus 49 ~~CC~~vk~~~---~ClC~~~~~---~~~~------~~-i~~~~a~~lp~~Cgv~~p-~C 94 (94)
.+||+.++..+ .|.|.-++. .... +. .=..+|..||..||+..| .|
T Consensus 429 ~~cc~~l~~~~~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c 488 (500)
T 3ob4_A 429 ERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRC 488 (500)
T ss_dssp HHHHHHHGGGTTCHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCC
T ss_pred HHHHHHHHhCCcccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccC
Confidence 68999999974 899988854 1000 00 112349999999999966 46
No 12
>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3
Probab=89.19 E-value=0.28 Score=30.11 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=42.6
Q ss_pred cccchhhhcCC---C----------CCChhHHHhccccC-CeecccccCcc---ccC---CCCHHHHHHHhcccCCCCCC
Q 034465 34 LSSCVSAITSS---T----------PPSRLCCSKIKEQK-PCLCQYLRNPS---LRK---FINTPNARRVASTCGTPFPK 93 (94)
Q Consensus 34 l~pC~~~~~~~---~----------~Ps~~CC~~vk~~~-~ClC~~~~~~~---~~~---~i~~~~a~~lp~~Cgv~~p~ 93 (94)
|.+|..|+... . .....||+.++..+ .|.|..++... +.. .-...+|..||..||++...
T Consensus 21 L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~~~~CrC~al~~~~Q~q~~g~q~~~~~q~A~~LP~~C~i~p~~ 100 (103)
T 1s6d_A 21 LNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQP 100 (103)
T ss_dssp TTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHSCGGGSSHHHHHHTTSTTCSSTHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhcCcccCcHHHHHHHHHHhcchhHHHHHHHHHhcHHhcCCCccc
Confidence 89999999742 1 12468999999988 99999885421 110 01244588999999997544
Q ss_pred C
Q 034465 94 C 94 (94)
Q Consensus 94 C 94 (94)
|
T Consensus 101 C 101 (103)
T 1s6d_A 101 C 101 (103)
T ss_dssp S
T ss_pred C
Confidence 4
No 13
>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai}
Probab=87.03 E-value=0.081 Score=30.58 Aligned_cols=46 Identities=28% Similarity=0.701 Sum_probs=32.6
Q ss_pred hhHHHhccccC-CeecccccCcc---------ccC---CCCHHHHHHHhcccCCCC-CCC
Q 034465 49 RLCCSKIKEQK-PCLCQYLRNPS---------LRK---FINTPNARRVASTCGTPF-PKC 94 (94)
Q Consensus 49 ~~CC~~vk~~~-~ClC~~~~~~~---------~~~---~i~~~~a~~lp~~Cgv~~-p~C 94 (94)
..||+.++..+ .|.|..++... +.. .=...+|..||..||+.. ..|
T Consensus 8 qqCC~eL~~~~~~CrC~aL~~~~~~~~qqgq~~~~qq~~~~~q~a~~LP~~C~l~~~~~C 67 (72)
T 2ds2_B 8 RQCCNQLRQVDRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPNIGAC 67 (72)
T ss_dssp HHHHHHHTTSCGGGHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCTTCCCC
T ss_pred HHHHHHHHhcCccccCHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhHHhcCCCCCCcC
Confidence 57999999988 99999885421 100 013556899999999984 434
No 14
>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea}
Probab=80.96 E-value=0.52 Score=29.97 Aligned_cols=64 Identities=19% Similarity=0.489 Sum_probs=43.3
Q ss_pred cCCCc----cccccchhhhcCCC------C-C-----------ChhHHHhcccc--C-CeecccccCcc------ccC-C
Q 034465 27 VTCSP----TQLSSCVSAITSST------P-P-----------SRLCCSKIKEQ--K-PCLCQYLRNPS------LRK-F 74 (94)
Q Consensus 27 ~~C~~----~~l~pC~~~~~~~~------~-P-----------s~~CC~~vk~~--~-~ClC~~~~~~~------~~~-~ 74 (94)
..|-. .+|.+|..|+.... + + -..||+.++.. + .|.|..++... +.. .
T Consensus 14 qqC~qq~q~~qL~~Cq~yl~q~~~~~~~~~~~~~~~~~~~e~~lqqCC~qL~q~~~~~qCrCeaL~q~~Q~qq~q~~gqq 93 (127)
T 1w2q_A 14 SSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQ 93 (127)
T ss_dssp CCHHHHHTTCCCHHHHHHHHTGGGSSSSSCSCCCTTSCCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHSCTTTTTST
T ss_pred cccHHHHHHhhHHHHHHHHHHHHhhccCCccchhhcccccHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhhhhhHH
Confidence 45654 25899999997421 0 1 25799999998 7 99999885422 111 1
Q ss_pred CC---HHHHHHHhcccCCC
Q 034465 75 IN---TPNARRVASTCGTP 90 (94)
Q Consensus 75 i~---~~~a~~lp~~Cgv~ 90 (94)
.. ..+|..||..||++
T Consensus 94 ~~~~~~q~A~~LP~~C~i~ 112 (127)
T 1w2q_A 94 MVQQFKRELMSLPQQCNFR 112 (127)
T ss_dssp THHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhHHhcCCC
Confidence 22 35589999999994
No 15
>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3
Probab=78.28 E-value=0.094 Score=30.43 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=32.9
Q ss_pred CChhHHHhccccC-CeecccccCcc--------ccCC---CCHHHHHHHhcccCCCC-CCC
Q 034465 47 PSRLCCSKIKEQK-PCLCQYLRNPS--------LRKF---INTPNARRVASTCGTPF-PKC 94 (94)
Q Consensus 47 Ps~~CC~~vk~~~-~ClC~~~~~~~--------~~~~---i~~~~a~~lp~~Cgv~~-p~C 94 (94)
.-..||+.++..+ .|.|..+.... +... -....|..||..||+.. ..|
T Consensus 10 ~~qqCC~qL~~~~~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~~~~C 70 (75)
T 1pnb_B 10 LREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC 70 (75)
T ss_dssp CTHHHHHHHHTSCGGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTTTCCC
T ss_pred HHHHHHHHHHhCCcccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCCCCCC
Confidence 4568999999988 99998885421 1111 12445778999999984 444
No 16
>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3
Probab=77.75 E-value=0.31 Score=30.90 Aligned_cols=63 Identities=27% Similarity=0.619 Sum_probs=42.4
Q ss_pred cCCCc----cccccchhhhcCC---C--------CC-----------ChhHHHhccccC-CeecccccCcc--------c
Q 034465 27 VTCSP----TQLSSCVSAITSS---T--------PP-----------SRLCCSKIKEQK-PCLCQYLRNPS--------L 71 (94)
Q Consensus 27 ~~C~~----~~l~pC~~~~~~~---~--------~P-----------s~~CC~~vk~~~-~ClC~~~~~~~--------~ 71 (94)
..|.. ..|.+|..|+... . .| -..||+.++..+ .|.|..++... +
T Consensus 16 q~C~~e~qq~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~e~~~qe~~~~qqCC~qL~~~~~~C~C~aL~~~v~~~~qQgq~ 95 (125)
T 1psy_A 16 QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQL 95 (125)
T ss_dssp SSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHhhHHHHHHHHHHHHhcccCcchhhhcchhhcccccHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhh
Confidence 35655 2589999999742 0 12 247999999988 99999884311 1
Q ss_pred c-CCC--CHHHHHHHhcccCC
Q 034465 72 R-KFI--NTPNARRVASTCGT 89 (94)
Q Consensus 72 ~-~~i--~~~~a~~lp~~Cgv 89 (94)
. ..+ -...|..||..||+
T Consensus 96 ~gqq~~~~~q~A~~LP~~C~i 116 (125)
T 1psy_A 96 HGEESERVAQRAGEIVSSCGV 116 (125)
T ss_dssp CTTCSHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhhHHHcCC
Confidence 1 011 24458899999998
No 17
>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}
Probab=74.03 E-value=0.39 Score=29.53 Aligned_cols=60 Identities=18% Similarity=0.453 Sum_probs=39.7
Q ss_pred ccccchhhhcC---C-C---CC---------ChhHHHhccccC-CeecccccCcc--------ccCC---CCHHHHHHHh
Q 034465 33 QLSSCVSAITS---S-T---PP---------SRLCCSKIKEQK-PCLCQYLRNPS--------LRKF---INTPNARRVA 84 (94)
Q Consensus 33 ~l~pC~~~~~~---~-~---~P---------s~~CC~~vk~~~-~ClC~~~~~~~--------~~~~---i~~~~a~~lp 84 (94)
.|.+|..|+.. + . .| ...||+.++..+ .|.|..+.... +... -....|..||
T Consensus 14 ~L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v~~qCrC~al~~~v~~~~~qgq~~~~~~~~~~~~a~~LP 93 (109)
T 1sm7_A 14 HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLP 93 (109)
T ss_dssp CCSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTTCHHHHTTTTHHHHHTSSCSSCCCTTHHHHHHHTTSSHH
T ss_pred cHHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhcCccCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhCH
Confidence 38899999973 1 1 11 247999999998 99998885411 1000 0223367799
Q ss_pred cccCCCCC
Q 034465 85 STCGTPFP 92 (94)
Q Consensus 85 ~~Cgv~~p 92 (94)
..||+..+
T Consensus 94 ~~Cnl~~~ 101 (109)
T 1sm7_A 94 NVCNMKQI 101 (109)
T ss_dssp HHSCCCSS
T ss_pred HhcCCCCC
Confidence 99999854
No 18
>1hss_A 0.19 alpha-amylase inhibitor; cereal inhibitor, animal amylase; 2.06A {Triticum aestivum} SCOP: a.52.1.2
Probab=59.51 E-value=0.63 Score=29.57 Aligned_cols=60 Identities=22% Similarity=0.487 Sum_probs=39.4
Q ss_pred ccccchhhhcCC----CCC---ChhHHHhccccC-CeecccccCc---ccc------------CC------CCHHHHHHH
Q 034465 33 QLSSCVSAITSS----TPP---SRLCCSKIKEQK-PCLCQYLRNP---SLR------------KF------INTPNARRV 83 (94)
Q Consensus 33 ~l~pC~~~~~~~----~~P---s~~CC~~vk~~~-~ClC~~~~~~---~~~------------~~------i~~~~a~~l 83 (94)
.|..|..|+... ..| ..+||+.+++.+ .|.|..+..- .+. .+ +-.+.|..|
T Consensus 16 pL~~Cr~Yv~~~C~g~~~p~~~~~~CC~QL~~i~~~CRC~ALr~m~~~~~~~~g~~~g~~~~e~~pgCrre~~~~~A~~L 95 (124)
T 1hss_A 16 ALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAQEGQAGTGAFPRCRREVVKLTAASI 95 (124)
T ss_dssp CCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHC---------CCSTTCCHHHHHHHHTTH
T ss_pred cchHHHHHHHHHccCCCCcHHHHHHHHHHHHhcCcccchHHHHHHHHhhhhhhhhhccccchhhccCCcHHHHHHHHHhc
Confidence 478899999632 123 346999999988 9999877320 000 00 111247789
Q ss_pred hcccCCCCC
Q 034465 84 ASTCGTPFP 92 (94)
Q Consensus 84 p~~Cgv~~p 92 (94)
|..||++.+
T Consensus 96 P~~Cnl~~~ 104 (124)
T 1hss_A 96 TAVCRLPIV 104 (124)
T ss_dssp HHHTTCCEE
T ss_pred hhhcCCCCC
Confidence 999999865
No 19
>1bea_A Bifunctional amylase/serine protease inhibitor; amylase/protease bifunctional inhibitor; 1.95A {Zea mays} SCOP: a.52.1.2 PDB: 1bfa_A
Probab=57.72 E-value=2.2 Score=27.12 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=39.8
Q ss_pred ccccchhhhcCC-----C-CC----ChhHHHhccccC-CeecccccC---cccc-------CC----C-------CHHHH
Q 034465 33 QLSSCVSAITSS-----T-PP----SRLCCSKIKEQK-PCLCQYLRN---PSLR-------KF----I-------NTPNA 80 (94)
Q Consensus 33 ~l~pC~~~~~~~-----~-~P----s~~CC~~vk~~~-~ClC~~~~~---~~~~-------~~----i-------~~~~a 80 (94)
.|..|..|+... . .| ...||+.+.+.+ .|.|..+.. ..+. .+ . -...|
T Consensus 16 pL~~CR~Yv~~q~C~~g~~~p~e~~~~~CC~QL~~i~~~CRC~ALr~m~~~~~~~~~~~~~~G~~~~~pgC~re~~~~~A 95 (127)
T 1bea_A 16 PLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADIPAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGFA 95 (127)
T ss_dssp CCHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHTSCGGGHHHHHHHHHHCBCCCSSSCCCBCCCCCBTTBCHHHHHHHH
T ss_pred cchHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhcCcccchHHHHHHHHhhhcccccccccccccccCCCcHHHHHHHH
Confidence 477899999632 1 23 235999999988 999987732 1110 00 1 12347
Q ss_pred HHH--hcccCCCCC
Q 034465 81 RRV--ASTCGTPFP 92 (94)
Q Consensus 81 ~~l--p~~Cgv~~p 92 (94)
..| |..||++.+
T Consensus 96 ~~Lv~P~~Cnl~~~ 109 (127)
T 1bea_A 96 ATLVTEAECNLATI 109 (127)
T ss_dssp TTTTSTTTTCCCCT
T ss_pred HhcCCcccCCCCCC
Confidence 889 999999877
No 20
>1b1u_A Protein (alpha-amylase/trypsin inhibitor RATI); bifunctional, hydrolase inhibitor; 2.20A {Eleusine coracana} SCOP: a.52.1.2 PDB: 1bip_A 1tmq_B
Probab=55.78 E-value=1.1 Score=28.32 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=40.2
Q ss_pred ccccchhhhcCC-----C-CC----ChhHHHhccccC-CeecccccC---cccc----------CCC-------CHHHHH
Q 034465 33 QLSSCVSAITSS-----T-PP----SRLCCSKIKEQK-PCLCQYLRN---PSLR----------KFI-------NTPNAR 81 (94)
Q Consensus 33 ~l~pC~~~~~~~-----~-~P----s~~CC~~vk~~~-~ClC~~~~~---~~~~----------~~i-------~~~~a~ 81 (94)
.|..|..|+... . .| ..+||+.+++.+ .|.|..+.. ..+. ... -...|.
T Consensus 16 ~L~~Cr~Yv~~q~C~~g~~~p~~~~~~~CC~QL~~i~~~CRC~ALr~m~~~~~~~~g~~~g~~~~~~pgC~re~~~~~A~ 95 (122)
T 1b1u_A 16 PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAP 95 (122)
T ss_dssp TTTHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCEECTTSCEECCCCCCCTTCCHHHHHHHGG
T ss_pred cchHHHHHHHHhcccCCCCCchHHHHHHHHHHHHhCCccccHHHHHHHHHhhhhhhcccccccchhccCCcHHHHHHHHH
Confidence 478899999632 1 23 246999999998 999987732 1110 001 113477
Q ss_pred HH--hcccCCCCCC
Q 034465 82 RV--ASTCGTPFPK 93 (94)
Q Consensus 82 ~l--p~~Cgv~~p~ 93 (94)
.| |..||++.++
T Consensus 96 ~Lv~P~~Cnl~~~~ 109 (122)
T 1b1u_A 96 KLVTEVECNLATIH 109 (122)
T ss_dssp GTTSTTTTCCCCTT
T ss_pred hcCCcccCCCCCCC
Confidence 79 9999998764
No 21
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}
Probab=47.89 E-value=9.7 Score=23.43 Aligned_cols=62 Identities=27% Similarity=0.495 Sum_probs=40.6
Q ss_pred ccccchhhhcC----CC---CCC-------hhHHHhccccC-CeecccccC---ccccC-C-C-------CHHHHHHHhc
Q 034465 33 QLSSCVSAITS----ST---PPS-------RLCCSKIKEQK-PCLCQYLRN---PSLRK-F-I-------NTPNARRVAS 85 (94)
Q Consensus 33 ~l~pC~~~~~~----~~---~Ps-------~~CC~~vk~~~-~ClC~~~~~---~~~~~-~-i-------~~~~a~~lp~ 85 (94)
+|..|..|+.. +. .+. .+||+.++..+ .|.|.-++. ..... + + -...|..||.
T Consensus 17 ~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv~~~CrC~aL~~~v~~~~qq~~~~~~~~~~~~~q~A~~LP~ 96 (114)
T 2lvf_A 17 MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPS 96 (114)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHCCcCccCHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhChH
Confidence 48889999962 11 111 35999999998 999987743 10000 0 0 1346999999
Q ss_pred ccCCCCCCC
Q 034465 86 TCGTPFPKC 94 (94)
Q Consensus 86 ~Cgv~~p~C 94 (94)
.||+..-.|
T Consensus 97 ~C~i~p~~C 105 (114)
T 2lvf_A 97 RCNLSPMRC 105 (114)
T ss_dssp HHCCCCSCC
T ss_pred hcCCCcccC
Confidence 999985445
Done!