BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034467
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 15 TLAALVSKRSRF--QDELRNIENQVYE------LETSYL---QD----IGQFG--NAFKG 57
TL L ++RF QD ++ IE Y+ ++ S L +D I FG N FKG
Sbjct: 130 TLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKG 189
Query: 58 FEGFLSSGKNTSNFKRPRKLQPEDRIFS 85
+ LS+ T F P L +IFS
Sbjct: 190 SDALLSNTVGTPAFMAPESLSETRKIFS 217
>pdb|2AII|X Chain X, Wild-Type Formylglycine Generating Enzyme Reacted With
Iodoacetamide
Length = 286
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTS 69
E+ N E + + T YL + +FG++F FEG LS T+
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLSEQVKTN 84
>pdb|2AFT|X Chain X, Formylglycine Generating Enzyme C336s Mutant
pdb|2AIJ|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Ctpsr
pdb|2AIK|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Lctpsra
pdb|2HI8|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Bromide Co- Crystallization
pdb|2HIB|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Iodide Co- Crystallization
Length = 286
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTS 69
E+ N E + + T YL + +FG++F FEG LS T+
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLSEQVKTN 84
>pdb|2AFY|X Chain X, Formylglycine Generating Enzyme C341s Mutant
Length = 286
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTS 69
E+ N E + + T YL + +FG++F FEG LS T+
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLSEQVKTN 84
>pdb|1Y1E|X Chain X, Human Formylglycine Generating Enzyme
pdb|1Y1H|X Chain X, Human Formylglycine Generating Enzyme, Oxidised Cys
Refined As Hydroperoxide
pdb|1Y1I|X Chain X, Hyuman Formylglycine Generating Enzyme, Reduced Form
Length = 311
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTS 69
E+ N E + + T YL + +FG++F FEG LS T+
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLSEQVKTN 97
>pdb|1Y1F|X Chain X, Human Formylglycine Generating Enzyme With Cysteine
Sulfenic Acid
pdb|1Y1J|X Chain X, Human Formylglycine Generating Enzyme, Sulfonic
AcidDESULFURATED FORM
Length = 311
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTS 69
E+ N E + + T YL + +FG++F FEG LS T+
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLSEQVKTN 97
>pdb|1Y1G|X Chain X, Human Formylglycine Generating Enzyme, Double Sulfonic
Acid Form
pdb|1Z70|X Chain X, 1.15a Resolution Structure Of The Formylglycine
Generating Enzyme Fge
Length = 311
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTS 69
E+ N E + + T YL + +FG++F FEG LS T+
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLSEQVKTN 97
>pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook
pdb|1L8D|B Chain B, Rad50 Coiled-Coil Zn Hook
Length = 112
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 10 SNPAATLAALVSKRSRFQDELRNIENQVYEL 40
+N TLA L+ ++S + ELR I+ ++ L
Sbjct: 74 NNSKNTLAKLIDRKSELERELRRIDMEIKRL 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,630,389
Number of Sequences: 62578
Number of extensions: 94549
Number of successful extensions: 177
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 13
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)