Query 034467
Match_columns 94
No_of_seqs 100 out of 168
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09340 NuA4: Histone acetylt 100.0 1.2E-38 2.7E-43 207.9 6.2 80 13-92 1-80 (80)
2 KOG3856 Uncharacterized conser 100.0 1.2E-29 2.7E-34 178.1 3.7 86 7-94 10-95 (135)
3 KOG3856 Uncharacterized conser 89.3 0.1 2.3E-06 37.2 -0.2 66 22-91 32-107 (135)
4 PF13864 Enkurin: Calmodulin-b 85.3 1.5 3.3E-05 28.8 3.7 26 19-44 72-97 (98)
5 PF14782 BBS2_C: Ciliary BBSom 81.6 3.3 7.2E-05 34.4 5.0 35 7-41 54-88 (431)
6 KOG3564 GTPase-activating prot 77.6 9.8 0.00021 32.9 6.6 44 11-56 74-117 (604)
7 PF03285 Paralemmin: Paralemmi 72.9 4.6 9.9E-05 32.0 3.4 37 13-49 2-38 (278)
8 KOG3129 26S proteasome regulat 71.1 7.1 0.00015 30.2 3.9 31 7-37 14-44 (231)
9 PF10146 zf-C4H2: Zinc finger- 70.9 7.8 0.00017 29.6 4.2 34 11-44 36-69 (230)
10 PF09403 FadA: Adhesion protei 67.2 3.2 6.9E-05 29.2 1.2 48 11-63 56-103 (126)
11 PRK00888 ftsB cell division pr 63.0 17 0.00038 24.3 4.2 41 9-49 29-71 (105)
12 TIGR02976 phageshock_pspB phag 62.2 16 0.00035 23.5 3.7 29 7-35 35-63 (75)
13 TIGR02894 DNA_bind_RsfA transc 61.7 19 0.0004 26.6 4.4 33 12-44 109-141 (161)
14 PTZ00464 SNF-7-like protein; P 61.0 16 0.00035 27.5 4.1 35 12-46 59-93 (211)
15 PF06667 PspB: Phage shock pro 58.6 20 0.00044 23.1 3.7 32 6-37 34-65 (75)
16 TIGR03807 RR_fam_repeat putati 56.8 4.3 9.4E-05 21.6 0.3 17 41-57 8-25 (27)
17 PF11461 RILP: Rab interacting 56.1 22 0.00048 22.1 3.5 34 13-46 2-35 (60)
18 PF05384 DegS: Sensor protein 54.4 31 0.00068 25.0 4.6 32 12-43 96-127 (159)
19 PRK09458 pspB phage shock prot 54.3 26 0.00057 22.7 3.7 32 9-41 37-68 (75)
20 PTZ00446 vacuolar sorting prot 54.1 29 0.00063 25.9 4.5 32 13-44 66-97 (191)
21 PRK13182 racA polar chromosome 53.4 21 0.00045 26.2 3.5 30 18-47 119-151 (175)
22 PF02403 Seryl_tRNA_N: Seryl-t 53.0 22 0.00048 23.1 3.3 37 18-54 71-107 (108)
23 PF05814 DUF843: Baculovirus p 52.3 16 0.00035 24.2 2.6 29 5-33 48-76 (83)
24 PRK05431 seryl-tRNA synthetase 50.3 19 0.0004 29.5 3.2 31 18-48 70-100 (425)
25 PF12240 Angiomotin_C: Angiomo 50.1 18 0.00039 27.6 2.8 30 20-49 63-92 (205)
26 TIGR01834 PHA_synth_III_E poly 49.9 33 0.00071 27.7 4.4 32 11-42 286-317 (320)
27 PF04111 APG6: Autophagy prote 49.6 39 0.00085 26.7 4.8 36 12-47 62-100 (314)
28 PF04380 BMFP: Membrane fusoge 49.5 48 0.001 21.1 4.4 19 24-42 60-78 (79)
29 PF02370 M: M protein repeat; 48.9 35 0.00077 17.1 3.2 17 22-38 2-18 (21)
30 PF12761 End3: Actin cytoskele 48.6 42 0.0009 25.4 4.6 31 12-42 133-181 (195)
31 PF13600 DUF4140: N-terminal d 48.3 55 0.0012 21.0 4.6 27 13-39 69-95 (104)
32 PF04568 IATP: Mitochondrial A 47.6 54 0.0012 22.2 4.6 27 15-41 70-96 (100)
33 PF10845 DUF2576: Protein of u 47.6 28 0.0006 20.8 2.8 22 22-43 12-33 (48)
34 PF12999 PRKCSH-like: Glucosid 47.0 47 0.001 24.7 4.6 28 15-42 147-174 (176)
35 PF11855 DUF3375: Protein of u 46.7 33 0.00073 28.5 4.2 30 6-35 136-165 (478)
36 PF08826 DMPK_coil: DMPK coile 46.5 69 0.0015 19.8 4.8 28 12-39 30-57 (61)
37 PF04568 IATP: Mitochondrial A 45.5 53 0.0012 22.2 4.3 24 14-37 72-99 (100)
38 PRK13182 racA polar chromosome 45.3 63 0.0014 23.6 5.0 33 7-39 78-110 (175)
39 TIGR00414 serS seryl-tRNA synt 44.9 26 0.00056 28.7 3.2 40 16-55 71-110 (418)
40 PF03148 Tektin: Tektin family 44.2 43 0.00094 27.0 4.4 36 11-46 248-283 (384)
41 PF04977 DivIC: Septum formati 44.1 61 0.0013 19.4 4.1 38 11-48 21-60 (80)
42 PRK05771 V-type ATP synthase s 44.0 34 0.00074 29.2 3.9 30 12-41 98-127 (646)
43 cd04772 HTH_TioE_rpt1 First He 43.9 43 0.00094 21.7 3.6 24 13-36 75-98 (99)
44 cd04776 HTH_GnyR Helix-Turn-He 43.5 68 0.0015 21.5 4.7 17 19-35 85-101 (118)
45 PF07323 DUF1465: Protein of u 41.8 56 0.0012 23.8 4.2 35 6-40 101-135 (156)
46 PRK03947 prefoldin subunit alp 41.2 63 0.0014 22.0 4.3 33 12-44 4-36 (140)
47 PF14703 DUF4463: Domain of un 39.6 66 0.0014 19.7 3.9 25 14-38 6-30 (85)
48 PF01920 Prefoldin_2: Prefoldi 39.3 79 0.0017 19.9 4.3 25 18-42 66-90 (106)
49 KOG0544 FKBP-type peptidyl-pro 38.7 13 0.00028 25.7 0.5 15 50-64 52-66 (108)
50 KOG3231 Predicted assembly/vac 38.0 65 0.0014 24.4 4.1 30 11-40 19-48 (208)
51 PF09403 FadA: Adhesion protei 37.7 89 0.0019 21.9 4.6 27 16-42 95-121 (126)
52 COG1382 GimC Prefoldin, chaper 37.7 94 0.002 21.7 4.7 42 12-55 18-63 (119)
53 COG3750 Uncharacterized protei 37.5 1E+02 0.0023 20.4 4.6 28 12-39 12-39 (85)
54 PHA02107 hypothetical protein 37.5 46 0.001 25.2 3.3 26 12-37 189-214 (216)
55 PF11180 DUF2968: Protein of u 37.5 82 0.0018 23.8 4.7 32 12-43 152-183 (192)
56 PF06698 DUF1192: Protein of u 37.4 40 0.00087 20.8 2.5 18 25-42 25-42 (59)
57 PF07106 TBPIP: Tat binding pr 37.0 36 0.00079 23.9 2.6 31 4-34 106-136 (169)
58 PF14193 DUF4315: Domain of un 36.3 1.1E+02 0.0024 19.9 4.7 43 11-59 5-47 (83)
59 COG0718 Uncharacterized protei 36.0 76 0.0016 21.7 3.9 30 15-44 6-35 (105)
60 PF09932 DUF2164: Uncharacteri 35.9 78 0.0017 20.3 3.8 24 18-41 51-74 (76)
61 PF14723 SSFA2_C: Sperm-specif 35.4 92 0.002 23.4 4.6 29 12-40 143-171 (179)
62 PF13600 DUF4140: N-terminal d 35.2 93 0.002 19.9 4.2 30 10-39 73-102 (104)
63 KOG3478 Prefoldin subunit 6, K 35.1 54 0.0012 23.1 3.1 43 12-56 17-63 (120)
64 PF13747 DUF4164: Domain of un 34.4 87 0.0019 20.4 3.9 35 8-42 33-67 (89)
65 PRK14127 cell division protein 34.4 98 0.0021 21.2 4.3 31 13-43 36-66 (109)
66 PF10458 Val_tRNA-synt_C: Valy 34.2 1.1E+02 0.0024 18.5 4.5 18 24-41 7-24 (66)
67 COG3879 Uncharacterized protei 33.8 86 0.0019 24.5 4.4 31 11-41 54-84 (247)
68 TIGR00293 prefoldin, archaeal 33.7 61 0.0013 21.5 3.2 24 14-37 13-36 (126)
69 TIGR02209 ftsL_broad cell divi 33.5 1.2E+02 0.0025 18.6 4.3 30 11-40 28-57 (85)
70 PF13094 CENP-Q: CENP-Q, a CEN 33.4 76 0.0016 22.1 3.8 15 17-31 23-37 (160)
71 PF09278 MerR-DNA-bind: MerR, 32.9 81 0.0018 18.3 3.3 24 17-40 39-62 (65)
72 PF15466 DUF4635: Domain of un 32.9 49 0.0011 23.6 2.7 32 11-42 83-119 (135)
73 smart00055 FCH Fes/CIP4 homolo 32.4 60 0.0013 19.8 2.8 48 12-63 24-75 (87)
74 PF11285 DUF3086: Protein of u 32.1 76 0.0016 25.3 3.9 52 14-65 4-59 (283)
75 smart00338 BRLZ basic region l 31.9 1.1E+02 0.0025 18.1 4.2 30 12-41 31-60 (65)
76 KOG2685 Cystoskeletal protein 31.9 43 0.00093 28.2 2.6 41 6-46 69-109 (421)
77 PF09032 Siah-Interact_N: Siah 31.9 1.2E+02 0.0027 19.6 4.3 21 23-43 28-48 (79)
78 COG3937 Uncharacterized conser 31.8 77 0.0017 22.0 3.5 19 24-42 86-104 (108)
79 PRK13729 conjugal transfer pil 31.8 56 0.0012 27.9 3.3 23 21-43 97-119 (475)
80 COG2919 Septum formation initi 31.8 47 0.001 22.5 2.4 32 12-48 62-93 (117)
81 PRK14624 hypothetical protein; 31.4 1.1E+02 0.0023 21.1 4.2 32 12-43 4-35 (115)
82 PRK13694 hypothetical protein; 31.3 1.5E+02 0.0033 19.6 4.6 30 10-39 8-37 (83)
83 PF02890 DUF226: Borrelia fami 30.9 64 0.0014 23.3 3.1 28 25-55 107-134 (141)
84 PF08946 Osmo_CC: Osmosensory 30.6 66 0.0014 19.1 2.6 20 23-42 14-33 (46)
85 PF14282 FlxA: FlxA-like prote 30.5 1E+02 0.0022 20.5 3.8 26 21-46 51-76 (106)
86 COG5481 Uncharacterized conser 30.4 96 0.0021 19.6 3.4 20 18-37 42-61 (67)
87 PF10393 Matrilin_ccoil: Trime 30.1 1.2E+02 0.0027 17.8 4.5 24 14-37 23-46 (47)
88 PF05529 Bap31: B-cell recepto 30.1 1.2E+02 0.0026 21.7 4.4 31 14-44 161-191 (192)
89 PF10073 DUF2312: Uncharacteri 30.0 1.6E+02 0.0034 19.1 4.5 27 13-39 3-29 (74)
90 PF04201 TPD52: Tumour protein 29.4 74 0.0016 23.4 3.2 20 21-40 29-48 (162)
91 PF06428 Sec2p: GDP/GTP exchan 29.4 1E+02 0.0022 20.7 3.7 34 15-48 2-35 (100)
92 PRK10265 chaperone-modulator p 29.2 1.1E+02 0.0023 20.2 3.7 28 14-41 71-98 (101)
93 PF04156 IncA: IncA protein; 28.8 1E+02 0.0022 21.8 3.8 34 14-47 81-114 (191)
94 KOG2129 Uncharacterized conser 28.6 92 0.002 26.8 4.0 43 11-53 296-338 (552)
95 PF02403 Seryl_tRNA_N: Seryl-t 28.5 1.7E+02 0.0036 18.9 4.8 33 8-40 68-100 (108)
96 PF14257 DUF4349: Domain of un 28.5 78 0.0017 23.7 3.3 46 13-58 148-201 (262)
97 PF09177 Syntaxin-6_N: Syntaxi 28.4 1.2E+02 0.0026 19.5 3.8 26 18-43 36-61 (97)
98 COG4942 Membrane-bound metallo 28.3 1.2E+02 0.0025 25.6 4.5 33 13-45 51-83 (420)
99 KOG0549 FKBP-type peptidyl-pro 28.3 21 0.00045 26.9 0.2 15 50-64 120-134 (188)
100 cd08638 DNA_pol_A_theta DNA po 28.1 96 0.0021 24.9 3.9 23 17-39 7-29 (373)
101 PLN02320 seryl-tRNA synthetase 28.1 59 0.0013 27.7 2.8 31 17-47 133-163 (502)
102 PRK00395 hfq RNA-binding prote 28.0 24 0.00052 23.1 0.4 21 42-62 23-43 (79)
103 COG0749 PolA DNA polymerase I 27.9 90 0.002 27.3 3.9 45 18-62 215-261 (593)
104 PRK14625 hypothetical protein; 27.6 1.1E+02 0.0024 20.8 3.7 27 16-42 4-30 (109)
105 KOG2264 Exostosin EXT1L [Signa 27.6 92 0.002 28.0 3.9 34 12-45 91-124 (907)
106 PRK13729 conjugal transfer pil 27.5 34 0.00073 29.1 1.3 24 14-37 97-120 (475)
107 PF11690 DUF3287: Protein of u 27.5 91 0.002 21.5 3.2 21 22-42 57-79 (109)
108 TIGR02338 gimC_beta prefoldin, 27.4 1.7E+02 0.0037 19.3 4.5 25 18-42 71-95 (110)
109 PF00170 bZIP_1: bZIP transcri 27.4 1.4E+02 0.003 17.6 4.6 29 13-41 32-60 (64)
110 COG5317 Uncharacterized protei 27.1 1.2E+02 0.0025 22.5 3.9 33 7-39 114-146 (175)
111 PF04799 Fzo_mitofusin: fzo-li 26.9 73 0.0016 23.6 2.8 32 12-43 110-142 (171)
112 KOG4715 SWI/SNF-related matrix 26.8 67 0.0014 26.6 2.8 42 12-53 226-267 (410)
113 PF09969 DUF2203: Uncharacteri 26.6 1.6E+02 0.0034 20.2 4.3 19 44-62 62-81 (120)
114 TIGR02978 phageshock_pspC phag 26.5 1.8E+02 0.0038 20.1 4.6 28 10-44 80-107 (121)
115 PHA02562 46 endonuclease subun 26.4 1.1E+02 0.0025 24.9 4.1 32 10-41 216-247 (562)
116 PF07195 FliD_C: Flagellar hoo 26.3 1.5E+02 0.0032 22.0 4.5 38 10-47 189-226 (239)
117 PF11488 Lge1: Transcriptional 26.0 1.6E+02 0.0034 18.6 4.0 27 14-40 37-63 (80)
118 PRK14622 hypothetical protein; 25.9 1.2E+02 0.0027 20.3 3.6 27 16-42 3-29 (103)
119 PF10046 BLOC1_2: Biogenesis o 25.8 1.6E+02 0.0035 19.2 4.2 9 33-41 71-79 (99)
120 PF05064 Nsp1_C: Nsp1-like C-t 25.8 1.7E+02 0.0036 19.7 4.3 33 12-44 62-94 (116)
121 PRK05771 V-type ATP synthase s 25.6 1.8E+02 0.0039 24.9 5.3 33 9-41 210-242 (646)
122 PF13234 rRNA_proc-arch: rRNA- 25.5 1.6E+02 0.0034 22.1 4.5 27 13-39 241-267 (268)
123 PF12269 zf-CpG_bind_C: CpG bi 25.4 1.3E+02 0.0028 23.4 4.0 33 10-42 25-57 (236)
124 COG1842 PspA Phage shock prote 24.9 1.5E+02 0.0032 22.6 4.2 33 11-43 42-74 (225)
125 TIGR02977 phageshock_pspA phag 24.8 1.8E+02 0.0039 21.4 4.7 31 12-42 43-73 (219)
126 COG1579 Zn-ribbon protein, pos 24.6 1.4E+02 0.0029 23.2 4.0 35 11-45 107-141 (239)
127 PF06305 DUF1049: Protein of u 24.5 1.2E+02 0.0026 17.8 3.1 17 23-39 50-66 (68)
128 PF08317 Spc7: Spc7 kinetochor 24.4 93 0.002 24.4 3.2 47 13-60 229-275 (325)
129 KOG1780 Small Nuclear ribonucl 24.4 30 0.00065 22.6 0.3 12 52-63 28-39 (77)
130 cd00632 Prefoldin_beta Prefold 24.1 1.8E+02 0.0039 18.9 4.1 22 19-40 75-96 (105)
131 TIGR02231 conserved hypothetic 24.1 1.6E+02 0.0035 24.3 4.7 28 14-41 145-172 (525)
132 TIGR02889 spore_YpeB germinati 24.0 1.3E+02 0.0028 25.1 4.1 60 2-61 116-183 (435)
133 PF10805 DUF2730: Protein of u 24.0 1.8E+02 0.004 19.2 4.2 28 13-40 34-61 (106)
134 PRK14626 hypothetical protein; 24.0 1.5E+02 0.0032 20.1 3.7 28 16-43 7-34 (110)
135 PF15463 ECM11: Extracellular 23.9 2E+02 0.0043 19.9 4.5 31 13-43 86-116 (139)
136 COG3418 Flagellar biosynthesis 23.9 1.8E+02 0.0038 21.2 4.3 32 13-44 37-68 (146)
137 cd00890 Prefoldin Prefoldin is 23.6 2.1E+02 0.0047 18.5 4.5 20 21-40 94-113 (129)
138 TIGR02383 Hfq RNA chaperone Hf 23.5 31 0.00068 21.5 0.3 21 42-62 19-39 (61)
139 PF14389 Lzipper-MIP1: Leucine 23.5 2E+02 0.0042 18.6 4.1 31 10-40 50-80 (88)
140 cd00584 Prefoldin_alpha Prefol 23.4 2.3E+02 0.005 18.7 4.7 26 14-39 94-119 (129)
141 smart00502 BBC B-Box C-termina 23.3 1.8E+02 0.0038 18.3 3.9 35 11-45 4-38 (127)
142 cd01716 Hfq Hfq, an abundant, 23.2 33 0.00072 21.3 0.4 20 43-62 16-35 (61)
143 PRK11637 AmiB activator; Provi 22.7 1.7E+02 0.0038 23.5 4.5 8 12-19 45-52 (428)
144 PF14362 DUF4407: Domain of un 22.7 1.7E+02 0.0038 22.2 4.3 38 12-49 133-170 (301)
145 PRK10636 putative ABC transpor 22.7 1.5E+02 0.0033 25.3 4.4 22 24-45 566-587 (638)
146 cd05533 POLBc_delta DNA polyme 22.7 2E+02 0.0044 23.2 4.9 51 10-63 74-128 (393)
147 PF03961 DUF342: Protein of un 22.6 1.7E+02 0.0037 23.8 4.5 37 10-46 371-407 (451)
148 TIGR02231 conserved hypothetic 22.5 1.8E+02 0.0039 24.1 4.7 33 13-45 137-169 (525)
149 PF04799 Fzo_mitofusin: fzo-li 22.5 1.9E+02 0.004 21.5 4.3 33 15-47 138-170 (171)
150 PRK00153 hypothetical protein; 22.2 1.6E+02 0.0036 19.3 3.6 29 16-44 5-33 (104)
151 PF11932 DUF3450: Protein of u 22.2 2E+02 0.0043 21.5 4.5 11 53-63 109-119 (251)
152 PF05055 DUF677: Protein of un 21.9 1.9E+02 0.0042 23.3 4.6 29 12-40 293-321 (336)
153 KOG2196 Nuclear porin [Nuclear 21.9 1.8E+02 0.004 22.9 4.3 36 11-46 131-167 (254)
154 cd01109 HTH_YyaN Helix-Turn-He 21.7 2.4E+02 0.0052 18.3 4.6 26 14-39 79-104 (113)
155 TIGR03064 sortase_srtB sortase 21.6 21 0.00045 27.2 -0.9 19 74-92 206-224 (232)
156 PRK14623 hypothetical protein; 21.4 1.7E+02 0.0038 19.8 3.7 28 16-43 3-30 (106)
157 PF01517 HDV_ag: Hepatitis del 21.4 1.3E+02 0.0029 22.5 3.3 38 14-55 15-55 (194)
158 PF07334 IFP_35_N: Interferon- 21.4 1.8E+02 0.004 18.8 3.6 24 16-39 2-25 (76)
159 KOG0971 Microtubule-associated 21.2 1.7E+02 0.0036 27.7 4.4 29 12-40 408-436 (1243)
160 PRK10697 DNA-binding transcrip 21.1 2.9E+02 0.0064 19.1 4.8 29 9-44 76-104 (118)
161 PF09738 DUF2051: Double stran 21.0 2.5E+02 0.0055 22.3 5.0 35 6-40 211-245 (302)
162 PRK05892 nucleoside diphosphat 20.9 95 0.0021 22.2 2.4 19 8-26 12-30 (158)
163 cd04769 HTH_MerR2 Helix-Turn-H 20.9 2.6E+02 0.0056 18.4 5.0 26 16-41 81-106 (116)
164 PF02996 Prefoldin: Prefoldin 20.9 2.5E+02 0.0053 18.1 4.4 18 22-39 85-102 (120)
165 PF00611 FCH: Fes/CIP4, and EF 20.8 1.7E+02 0.0036 17.6 3.3 47 13-63 25-75 (91)
166 COG4942 Membrane-bound metallo 20.8 2E+02 0.0043 24.2 4.5 30 13-42 44-73 (420)
167 PRK10698 phage shock protein P 20.8 2.4E+02 0.0051 21.1 4.7 29 13-41 44-72 (222)
168 PRK05431 seryl-tRNA synthetase 20.7 2.2E+02 0.0047 23.4 4.7 29 11-39 70-98 (425)
169 PF10473 CENP-F_leu_zip: Leuci 20.6 2.3E+02 0.0049 20.2 4.3 33 11-43 70-102 (140)
170 COG1842 PspA Phage shock prote 20.6 2.3E+02 0.005 21.5 4.6 30 13-42 105-134 (225)
171 PRK14621 hypothetical protein; 20.6 1.9E+02 0.0041 19.7 3.8 27 16-42 6-32 (111)
172 cd08637 DNA_pol_A_pol_I_C Poly 20.3 1.7E+02 0.0038 23.4 4.0 24 17-40 3-26 (377)
173 PF09440 eIF3_N: eIF3 subunit 20.3 2E+02 0.0042 20.2 3.9 21 17-37 65-85 (133)
174 PF11932 DUF3450: Protein of u 20.3 2.5E+02 0.0053 21.0 4.7 16 22-37 50-65 (251)
175 PHA01750 hypothetical protein 20.2 1.7E+02 0.0037 18.9 3.2 8 31-38 59-66 (75)
176 COG5460 Uncharacterized conser 20.1 1.9E+02 0.0042 19.1 3.5 23 20-42 56-78 (82)
177 PF02388 FemAB: FemAB family; 20.0 2.4E+02 0.0051 22.8 4.8 30 12-41 254-293 (406)
No 1
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=100.00 E-value=1.2e-38 Score=207.93 Aligned_cols=80 Identities=45% Similarity=0.803 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeecCcccccCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSP 92 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIikGfd~y~k~~~~~~~~kr~~~~~d~DRiFS~SS~ts~ 92 (94)
+++|++++++|++|+++|++||+|||++||+||+++.++||||||||||+++++.+++.+|+++|+++|||||+||+|||
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k~~~~~~~~~~~~~~~~~dRiFS~SS~t~~ 80 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLKSSSGAANSRRKRGFTDDDRIFSLSSVTSP 80 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhccccccccccccCCCCccccCcccccccCC
Confidence 47899999999999999999999999999999998888999999999999998766677899999999999999999998
No 2
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.2e-29 Score=178.08 Aligned_cols=86 Identities=40% Similarity=0.629 Sum_probs=79.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeecCcccccCCCCCCCCCCCCCCCCCCccccC
Q 034467 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSL 86 (94)
Q Consensus 7 ~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIikGfd~y~k~~~~~~~~kr~~~~~d~DRiFS~ 86 (94)
+...+++++|.+||++|++|++.|+.||+|||++||+||++|..+||||+||++|+++ ++.+.+|.++|.+.||+||.
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsYle~ts~~gniirG~e~~lks--ns~n~rr~r~f~eaerlfs~ 87 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKS--NSKNDRRNRKFKEAERLFSK 87 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccc--cccchhhhccccHHHHHhhh
Confidence 4456789999999999999999999999999999999999999999999999999998 33456889999999999999
Q ss_pred CCCCCCCC
Q 034467 87 SSVTSPAI 94 (94)
Q Consensus 87 SS~ts~~~ 94 (94)
||+|||++
T Consensus 88 ss~ss~~~ 95 (135)
T KOG3856|consen 88 SSDSSFAN 95 (135)
T ss_pred cccccccc
Confidence 99999874
No 3
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.27 E-value=0.1 Score=37.20 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc----------ccccccccccceeecCcccccCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 034467 22 KRSRFQDELRNIENQVYELET----------SYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTS 91 (94)
Q Consensus 22 kr~~Le~~L~~lE~qIy~~Et----------~YL~et~~~GNIikGfd~y~k~~~~~~~~kr~~~~~d~DRiFS~SS~ts 91 (94)
.=..|++++=.+|-.-+..-. -||......|++++||+-+-+.-+.++ -..|...+|+|+++|.|+
T Consensus 32 tl~nLe~qIY~~EgsYle~ts~~gniirG~e~~lksns~n~rr~r~f~eaerlfs~ss----~ss~~~~sp~~al~s~t~ 107 (135)
T KOG3856|consen 32 TLANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKSNSKNDRRNRKFKEAERLFSKSS----DSSFANNSPAFALSSDTY 107 (135)
T ss_pred HHHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccccccchhhhccccHHHHHhhhcc----cccccccCchhcccchhH
Confidence 334789999999887554432 477765568999999998866432221 245677899999999875
No 4
>PF13864 Enkurin: Calmodulin-binding
Probab=85.25 E-value=1.5 Score=28.83 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 19 LVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
...+|..||.+|..||+.|--+|..+
T Consensus 72 ~~~rK~~lE~~L~qlE~dI~~lsr~~ 97 (98)
T PF13864_consen 72 KKRRKEELEKELKQLEKDIKKLSRPK 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46789999999999999999888654
No 5
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=81.58 E-value=3.3 Score=34.38 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 7 ~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
..+......|++|++||++|..+|..+|+++-..+
T Consensus 54 ~~~~~~~~~lreL~qkKQ~Ll~EL~nyEe~~~~~~ 88 (431)
T PF14782_consen 54 VDASDEQEALRELSQKKQNLLLELRNYEENAKREK 88 (431)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45567789999999999999999999999999766
No 6
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=77.55 E-value=9.8 Score=32.89 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceee
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFK 56 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIik 56 (94)
++++.+..+|++|++++-++..+|.||...---...+.. |||-+
T Consensus 74 ha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~--~s~~~ 117 (604)
T KOG3564|consen 74 HARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDIS--GSIQL 117 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--ccccc
Confidence 358899999999999999999999999987777766664 55543
No 7
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=72.87 E-value=4.6 Score=31.98 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~ 49 (94)
++++.+=.+|=+.||+.+..||++|-.+|+.=+.-+.
T Consensus 2 rrQ~qEDEqKtR~LEesI~RLEkEIe~LE~~es~iSt 38 (278)
T PF03285_consen 2 RRQMQEDEQKTRSLEESIHRLEKEIEALENGESQIST 38 (278)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Confidence 5677777888889999999999999999997666443
No 8
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=7.1 Score=30.25 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 7 RGNSNPAATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 7 ~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
....+...++++|+.+|++||.+|..+..-+
T Consensus 14 ~ag~~~~~~~~eLm~~K~eiE~qin~~~~vL 44 (231)
T KOG3129|consen 14 MAGANTKSELKELMDKKTEIETQINELVEVL 44 (231)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999988887543
No 9
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.88 E-value=7.8 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+..++...|+.-|....++|..|.+.|..+|..-
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999888888755
No 10
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=67.21 E-value=3.2 Score=29.20 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeecCccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIikGfd~y~k 63 (94)
.+.+.|.++.+.+..+++.+..|+.. .++.|..+. |+++++-|+.|.+
T Consensus 56 ~a~~~L~~~~~~~~~i~e~~~kl~~~---~~~r~yk~e--Yk~llk~y~~~~~ 103 (126)
T PF09403_consen 56 AAEAELAELKELYAEIEEKIEKLKQD---SKVRWYKDE--YKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGSTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh---cchhHHHHH--HHHHHHHHHHHHH
Confidence 35567777777777777777777764 777787764 7888888887765
No 11
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.00 E-value=17 Score=24.34 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccccc
Q 034467 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELET--SYLQDIG 49 (94)
Q Consensus 9 ~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et--~YL~et~ 49 (94)
...+++++.++.++-.+|+.+-+.|+.+|..+.. .|+++-.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3456677777777777888888888888988866 6888764
No 12
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=62.18 E-value=16 Score=23.50 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 7 RGNSNPAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 7 ~~~~~~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
.-+.+-.++|.+|.++=++|++.+..||.
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888875
No 13
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.70 E-value=19 Score=26.56 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+..++.+|.++=+.|+.++..|++++...|..|
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888888888888887777776
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=61.01 E-value=16 Score=27.53 Aligned_cols=35 Identities=9% Similarity=0.230 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
.+.....+|++|+.++.+|.++..++..+|.....
T Consensus 59 ~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ 93 (211)
T PTZ00464 59 HKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFT 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666678899998999888888888888776654
No 15
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=58.59 E-value=20 Score=23.08 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 6 q~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
|.-+++-.+.|.+|..+=+++++.+..||.=+
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567888999998888999998888643
No 16
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=56.79 E-value=4.3 Score=21.59 Aligned_cols=17 Identities=29% Similarity=0.351 Sum_probs=13.1
Q ss_pred cccccc-ccccccceeec
Q 034467 41 ETSYLQ-DIGQFGNAFKG 57 (94)
Q Consensus 41 Et~YL~-et~~~GNIikG 57 (94)
.+-|++ ++.-.||||++
T Consensus 8 ~G~y~~~d~~vsGNvIrn 25 (27)
T TIGR03807 8 WGIYLEFDAVVTGNVIRN 25 (27)
T ss_pred eEEEEeeeeEEecceecC
Confidence 466888 66668999986
No 17
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=56.13 E-value=22 Score=22.12 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
..+|++.|.-|.+|..++-.||+++.-+-..-+.
T Consensus 2 l~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~~ 35 (60)
T PF11461_consen 2 LQELREVLQERNELKARVFLLEEELAYYKSELLP 35 (60)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3689999999999999999999987655544333
No 18
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=54.42 E-value=31 Score=25.02 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
++.+-..|..+|..|+..|..|+.-|-.-|.-
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777899999999999999999999888763
No 19
>PRK09458 pspB phage shock protein B; Provisional
Probab=54.32 E-value=26 Score=22.74 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 9 ~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+.+=.+.|.+|.++=+++++.+..||. |-|-|
T Consensus 37 s~~d~~~L~~L~~~A~rm~~RI~tLE~-ILDae 68 (75)
T PRK09458 37 SQEEQQRLAQLTEKAERMRERIQALEA-ILDAE 68 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccc
Confidence 444577899999999999999999986 43433
No 20
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=54.12 E-value=29 Score=25.94 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+.....+|++|+.++.+|.++..++..+|+.-
T Consensus 66 k~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~ 97 (191)
T PTZ00446 66 MSNAKILLKRKKLYEQEIENILNNRLTLEDNM 97 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43455678888888887777666666665543
No 21
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=53.42 E-value=21 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=20.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhccccccc
Q 034467 18 ALVSKRSRFQD---ELRNIENQVYELETSYLQD 47 (94)
Q Consensus 18 ~ll~kr~~Le~---~L~~lE~qIy~~Et~YL~e 47 (94)
+||+.|+++|+ .|.+||+.|...|-.|...
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45666766664 5667777888877776654
No 22
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.99 E-value=22 Score=23.10 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccce
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNA 54 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNI 54 (94)
+|++.-+.|.+++..+|.++-..|...-.--...+||
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNi 107 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELLLSIPNI 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4455555666666666666666666555544445555
No 23
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=52.28 E-value=16 Score=24.20 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=24.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034467 5 QQRGNSNPAATLAALVSKRSRFQDELRNI 33 (94)
Q Consensus 5 ~q~~~~~~~~~L~~ll~kr~~Le~~L~~l 33 (94)
.++++.|+..+...-++||++|++-+++|
T Consensus 48 teS~~~dL~t~k~K~~KKK~~ln~afDAi 76 (83)
T PF05814_consen 48 TESTPQDLQTEKAKSIKKKRDLNDAFDAI 76 (83)
T ss_pred CCCcHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 45667788888888899999999998876
No 24
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.35 E-value=19 Score=29.53 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et 48 (94)
+|+++-++|.++|..+|+++...|....+..
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666667777777766666655443
No 25
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=50.11 E-value=18 Score=27.61 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccc
Q 034467 20 VSKRSRFQDELRNIENQVYELETSYLQDIG 49 (94)
Q Consensus 20 l~kr~~Le~~L~~lE~qIy~~Et~YL~et~ 49 (94)
...-++=|+.+-+||..+-.-|..||+++.
T Consensus 63 ~~~LrEkEErILaLEad~~kWEqkYLEEs~ 92 (205)
T PF12240_consen 63 KELLREKEERILALEADMTKWEQKYLEESA 92 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445578999999999999999999874
No 26
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=49.85 E-value=33 Score=27.72 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
++|++|.++-++=.+|+++++.|+++|-++|.
T Consensus 286 PTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 286 PTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56889999999999999999999999988775
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.57 E-value=39 Score=26.67 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYEL---ETSYLQD 47 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~---Et~YL~e 47 (94)
+.++|.+|-+.+.+|+++|..+|.+...+ |..|+.+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~ 100 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWRE 100 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788888888877776554 4445443
No 28
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=49.46 E-value=48 Score=21.08 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 034467 24 SRFQDELRNIENQVYELET 42 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~Et 42 (94)
.++...|+.||.+|..+|.
T Consensus 60 ~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 60 ARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3456677888888887774
No 29
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=48.93 E-value=35 Score=17.13 Aligned_cols=17 Identities=6% Similarity=0.292 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034467 22 KRSRFQDELRNIENQVY 38 (94)
Q Consensus 22 kr~~Le~~L~~lE~qIy 38 (94)
.+++||.++.+||.+--
T Consensus 2 akk~lEa~~qkLe~e~q 18 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEKQ 18 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 46788888888887643
No 30
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=48.63 E-value=42 Score=25.39 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=23.6
Q ss_pred HHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHHhcc
Q 034467 12 PAATLAALVS-KRSRF-----------------QDELRNIENQVYELET 42 (94)
Q Consensus 12 ~~~~L~~ll~-kr~~L-----------------e~~L~~lE~qIy~~Et 42 (94)
.+.+|.+||. |+++| .++|..||+||--+|.
T Consensus 133 vk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~ 181 (195)
T PF12761_consen 133 VKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLES 181 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4888999998 44444 4678889999888874
No 31
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=48.30 E-value=55 Score=21.05 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
..++.+|-++.+.|++++..++.++..
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~ 95 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQA 95 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 32
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=47.60 E-value=54 Score=22.17 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+..+|-+-|++|++++..-+++|-++|
T Consensus 70 EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 70 EKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666555
No 33
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=47.58 E-value=28 Score=20.83 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 034467 22 KRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 22 kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.|++|..+|..|-..++++++.
T Consensus 12 dreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 3778999999999999999874
No 34
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=47.02 E-value=47 Score=24.66 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
.+.+..++|++++.+|..|+++|-..+.
T Consensus 147 ~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 147 LIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667788899999999999987764
No 35
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=46.70 E-value=33 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=24.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 6 QRGNSNPAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 6 q~~~~~~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
...+.|+...|..|-++|.+|+.+|+.|+.
T Consensus 136 ~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~a 165 (478)
T PF11855_consen 136 EGTDPDPERRIAELEREIAEIDAEIDRLEA 165 (478)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356788888899888888888888888874
No 36
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.48 E-value=69 Score=19.79 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
+...|++.-++.+.|..++..|++++-.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888899999998888754
No 37
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=45.48 E-value=53 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSR----FQDELRNIENQV 37 (94)
Q Consensus 14 ~~L~~ll~kr~~----Le~~L~~lE~qI 37 (94)
.+|+.|-++-.+ .+++|+.||++|
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444 777788888777
No 38
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=45.33 E-value=63 Score=23.65 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 7 ~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
.+.+.+...+..|..++..|+.+|+.||.++-.
T Consensus 78 ~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 78 IVQNISSVDFEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666777777777777777766543
No 39
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=44.90 E-value=26 Score=28.65 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccee
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIi 55 (94)
..+|+++=++|.++|..+|++++..|..+.+.....+|++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455666667777777788887777777665443344443
No 40
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=44.24 E-value=43 Score=27.00 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
-+++.+.++..-|.+|+.+|..++++|.+.|..+-.
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~ 283 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIED 283 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 457788889999999999999999999998876643
No 41
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.09 E-value=61 Score=19.37 Aligned_cols=38 Identities=13% Similarity=0.365 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYEL--ETSYLQDI 48 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~--Et~YL~et 48 (94)
.+++++.++-++-.++..+...|+.+|-.+ --.|++.-
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 456677777777777777777777777776 34555543
No 42
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=43.96 E-value=34 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+.+++.++.+++++|+++++.+++++...|
T Consensus 98 ~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 98 IEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677788888888888888888887665
No 43
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=43.93 E-value=43 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQ 36 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~q 36 (94)
...+.-|.+++..|+++++.|++.
T Consensus 75 ~~~~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 75 ASALALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555666666666554
No 44
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=43.55 E-value=68 Score=21.51 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034467 19 LVSKRSRFQDELRNIEN 35 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~ 35 (94)
+.++...|+.+++.|+.
T Consensus 85 l~~~~~~l~~~~~~l~~ 101 (118)
T cd04776 85 IEKRRAELEQQRRDIDA 101 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 45
>PF07323 DUF1465: Protein of unknown function (DUF1465); InterPro: IPR010848 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.; PDB: 3CTW_D.
Probab=41.85 E-value=56 Score=23.77 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=25.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 6 q~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
-+.-+.+...|++||.+=..|.+.+..|+..||.-
T Consensus 101 ~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~ 135 (156)
T PF07323_consen 101 PPGWAELPEGLRALIERSERLYERVARLDRMIYEP 135 (156)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred chhhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34567789999999999999999999999999985
No 46
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=41.24 E-value=63 Score=21.96 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
...+|.+|+...+++..++..|..+|-.++..-
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASI 36 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777776666543
No 47
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=39.55 E-value=66 Score=19.66 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVY 38 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy 38 (94)
..|..|+.+|+++...|+.-+....
T Consensus 6 ~~L~~Lv~~R~~~~~kLE~a~~~~~ 30 (85)
T PF14703_consen 6 SKLEKLVEEREKAVRKLESAESKYL 30 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888887766543
No 48
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.28 E-value=79 Score=19.87 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
.|-.+...++.++..|+.++-.++.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444443
No 49
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.69 E-value=13 Score=25.71 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=11.2
Q ss_pred cccceeecCcccccC
Q 034467 50 QFGNAFKGFEGFLSS 64 (94)
Q Consensus 50 ~~GNIikGfd~y~k~ 64 (94)
.-|-||||||--+-.
T Consensus 52 GkgeVIkGwdegv~q 66 (108)
T KOG0544|consen 52 GKGEVIKGWDEGVAQ 66 (108)
T ss_pred cCcceeechhhcchh
Confidence 368999999865543
No 50
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.97 E-value=65 Score=24.39 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
.+|+.-+++...|+++|++=.+||.+|-..
T Consensus 19 eLRkt~RdierdRr~me~~Ek~LElEIkk~ 48 (208)
T KOG3231|consen 19 ELRKTQRDIERDRRAMEKQEKQLELEIKKM 48 (208)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788999999999999999998764
No 51
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=37.74 E-value=89 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
++..-.-+++|+++++.-|+.|.++|.
T Consensus 95 lk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 95 LKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444577899999999999998874
No 52
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.73 E-value=94 Score=21.74 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc----ccccee
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG----QFGNAF 55 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~----~~GNIi 55 (94)
++.+|..++-.|.+|+.+|..+++-+-.+|. |++.. ..||++
T Consensus 18 Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~--l~eD~~vYk~VG~ll 63 (119)
T COG1382 18 LQQQLQKVILQKQQLEAQLKEIEKALEELEK--LDEDAPVYKKVGNLL 63 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcccHHHHHhhhHH
Confidence 4566777777777777777777766655543 44332 256664
No 53
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.51 E-value=1e+02 Score=20.42 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
...+|++.+.+=+.||++-+.|-.+|-+
T Consensus 12 a~~QLrafIerIERlEeEk~~i~~dikd 39 (85)
T COG3750 12 AAGQLRAFIERIERLEEEKKTIADDIKD 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998865
No 54
>PHA02107 hypothetical protein
Probab=37.51 E-value=46 Score=25.18 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
.-.++++|+++|+++|+.+..|-..|
T Consensus 189 ID~EI~~LQA~RKEiEDN~K~IKN~I 214 (216)
T PHA02107 189 IDEEIKELQARRKEIEDNIKSIKNAI 214 (216)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678899999999999998876654
No 55
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=37.50 E-value=82 Score=23.82 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.+++...|-..|.....+|.+|..+|-.+|..
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999998864
No 56
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=37.44 E-value=40 Score=20.81 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 034467 25 RFQDELRNIENQVYELET 42 (94)
Q Consensus 25 ~Le~~L~~lE~qIy~~Et 42 (94)
+|++.++.||.+|...|+
T Consensus 25 EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.95 E-value=36 Score=23.94 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=16.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 4 RQQRGNSNPAATLAALVSKRSRFQDELRNIE 34 (94)
Q Consensus 4 ~~q~~~~~~~~~L~~ll~kr~~Le~~L~~lE 34 (94)
.+++++.++...+.+|-+.-.+|+..|..|.
T Consensus 106 ~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 106 SSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444
No 58
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.27 E-value=1.1e+02 Score=19.92 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeecCc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFE 59 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIikGfd 59 (94)
.+.+++.-.-.|+.+++..|..||.++-..|-. ..-.||+|+.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~------EIv~~VR~~~ 47 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAENL------EIVQMVRSMK 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcC
Confidence 355666666777778888888888887776632 3445666654
No 59
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.98 E-value=76 Score=21.69 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
.+..|.+.=+++++++..++++|.+.|-++
T Consensus 6 ~~~~l~kqaqqmQ~~~~~~Q~ela~~ev~g 35 (105)
T COG0718 6 DMQKLMKQAQQMQKKMQKMQEELAQKEVTG 35 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcEEee
Confidence 456777888899999999999999988654
No 60
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=35.91 E-value=78 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
.+..-++-+.+.+..|+..||.+|
T Consensus 51 gv~DA~~~~~~r~~~l~~~ly~lE 74 (76)
T PF09932_consen 51 GVQDAQAVLEERMEDLEEELYELE 74 (76)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhh
Confidence 445567778899999999999887
No 61
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=35.38 E-value=92 Score=23.37 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
=|-+..+|..-|..+..+|..||.|+-|.
T Consensus 143 ER~EaeQLQsLR~avRqElqELE~QL~DR 171 (179)
T PF14723_consen 143 EREEAEQLQSLRSAVRQELQELEFQLEDR 171 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999998764
No 62
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=35.23 E-value=93 Score=19.93 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
..++++|+.+-.++..+..++..++.+|--
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888899999999998888753
No 63
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=35.12 E-value=54 Score=23.07 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc----cccceee
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG----QFGNAFK 56 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~----~~GNIik 56 (94)
+.+.|...+.-|++|+.+|. |..|-..|-.-|++.+ ..|+|+-
T Consensus 17 LQk~l~k~~~~rqkle~qL~--Enk~V~~Eldlle~d~~VYKliGpvLv 63 (120)
T KOG3478|consen 17 LQKELEKYVESRQKLETQLQ--ENKIVLEELDLLEEDSNVYKLIGPVLV 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhcccchHHHHhcchhh
Confidence 44555555666666666554 5667777888888654 2566553
No 64
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.41 E-value=87 Score=20.41 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 8 ~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
..+.+..++..|-..|..|+.+|.+.|...-.+|.
T Consensus 33 ~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 33 KRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 34677888888999999999999999887655553
No 65
>PRK14127 cell division protein GpsB; Provisional
Probab=34.39 E-value=98 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
-..+..+++....|.+++..|+.+|-.++..
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677777777777777777766663
No 66
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.19 E-value=1.1e+02 Score=18.48 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 034467 24 SRFQDELRNIENQVYELE 41 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~E 41 (94)
..|+++|..++.+|-..+
T Consensus 7 ~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 67
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.79 E-value=86 Score=24.55 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
++.++++.+.++..+|..+...+|..|-...
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888887777
No 68
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=33.72 E-value=61 Score=21.50 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
.++..|...+..|...+..++.-+
T Consensus 13 ~~i~~l~~~i~~l~~~i~e~~~~~ 36 (126)
T TIGR00293 13 QQVESLQAQIAALRALIAELETAI 36 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 69
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.48 E-value=1.2e+02 Score=18.62 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
....++..+.++..+++.+...|+.+|..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888888887764
No 70
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.42 E-value=76 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 034467 17 AALVSKRSRFQDELR 31 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~ 31 (94)
..++..++.|+..|.
T Consensus 23 e~ll~~~~~LE~qL~ 37 (160)
T PF13094_consen 23 EQLLDRKRALERQLA 37 (160)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666555
No 71
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=32.94 E-value=81 Score=18.27 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 17 AALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
.-+..++++|+++++.|+.-...+
T Consensus 39 ~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554433
No 72
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=32.92 E-value=49 Score=23.62 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcc
Q 034467 11 NPAATLAALVSK-----RSRFQDELRNIENQVYELET 42 (94)
Q Consensus 11 ~~~~~L~~ll~k-----r~~Le~~L~~lE~qIy~~Et 42 (94)
.|-+.++..++. -++||+++..||+.+-|+|-
T Consensus 83 EPik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~ 119 (135)
T PF15466_consen 83 EPIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEE 119 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554443 36789999999999999884
No 73
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=32.35 E-value=60 Score=19.85 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccccccccccccceeecCccccc
Q 034467 12 PAATLAALVSKRSRFQDE----LRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~----L~~lE~qIy~~Et~YL~et~~~GNIikGfd~y~k 63 (94)
.-+++...+++|.++|++ |.+|-++.- ..-.....+|.+-+.|+.++.
T Consensus 24 ~~~~~~~f~~~Ra~iE~eYak~L~kL~~~~~----~~~~~~~~~~s~~~aw~~~~~ 75 (87)
T smart00055 24 LLEDLKKFIRERAKIEEEYAKKLQKLSKKLR----AVRDTESEYGSLSKSWEVLLS 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCCCcchhHHHHHHHHHH
Confidence 456788999999999987 445544421 111222346666677777654
No 74
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.12 E-value=76 Score=25.35 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccccccceeecCcccccCC
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELETS----YLQDIGQFGNAFKGFEGFLSSG 65 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~----YL~et~~~GNIikGfd~y~k~~ 65 (94)
.-|++|.++|..|+.++++||..=-..|.+ +-..+...--=|+||--|+-++
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdYLvGs 59 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDYLVGS 59 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHHHHHH
Confidence 468999999999999999999876655544 3333332334488999998753
No 75
>smart00338 BRLZ basic region leucin zipper.
Probab=31.93 E-value=1.1e+02 Score=18.05 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+..++..|...-..|..++..|+.+|..+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666655443
No 76
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=31.87 E-value=43 Score=28.16 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=34.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 034467 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 6 q~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
+.++.++...+.++-.-|..|+.+|+.|..+|.+++..|..
T Consensus 69 ~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~r 109 (421)
T KOG2685|consen 69 RDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRR 109 (421)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888999999999999999999988753
No 77
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=31.86 E-value=1.2e+02 Score=19.58 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 034467 23 RSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 23 r~~Le~~L~~lE~qIy~~Et~ 43 (94)
|.-|..++..||.+|-.++-.
T Consensus 28 k~~L~~ei~klE~eI~~~~~~ 48 (79)
T PF09032_consen 28 KDLLTNEIRKLETEIKKLKEA 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566788888888888887753
No 78
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=31.85 E-value=77 Score=21.95 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 034467 24 SRFQDELRNIENQVYELET 42 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~Et 42 (94)
..|..++..||+||.++|-
T Consensus 86 ~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 86 DELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677778888888877764
No 79
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.82 E-value=56 Score=27.86 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 034467 21 SKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 21 ~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+++..++.+|+.+|.+|-.++..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666555
No 80
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=31.82 E-value=47 Score=22.50 Aligned_cols=32 Identities=16% Similarity=0.483 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et 48 (94)
..+++..|-+.+..|+.+++.|+.. ..|+++-
T Consensus 62 ~~~e~~~L~~~~~~l~~ei~~L~dg-----~~~i~e~ 93 (117)
T COG2919 62 QQAELEKLSARNTALEAEIKDLKDG-----RDYIEER 93 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-----HHHHHHH
Confidence 3455555555555555555555554 4566654
No 81
>PRK14624 hypothetical protein; Provisional
Probab=31.40 E-value=1.1e+02 Score=21.13 Aligned_cols=32 Identities=3% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.-+.|.+++++=+++++++.+++++|.+.|-+
T Consensus 4 ~~~nm~~~mkqAq~mQ~km~~~QeeL~~~~v~ 35 (115)
T PRK14624 4 KIKNMSEALSNMGNIREKMEEVKKRIASIRVV 35 (115)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 34458899999999999999999999887643
No 82
>PRK13694 hypothetical protein; Provisional
Probab=31.31 E-value=1.5e+02 Score=19.63 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
.-+..+|+..+.+=..|+++-+.|-.+|-+
T Consensus 8 ~va~~~Lr~fIERIERLEeEkk~i~~dikd 37 (83)
T PRK13694 8 VVAKEQLRAFIERIERLEEEKKTISDDIKD 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999998876
No 83
>PF02890 DUF226: Borrelia family of unknown function DUF226; InterPro: IPR004180 This family of proteins are found in Borrelia burgdorferi and Borrelia garinii. The proteins are about 190 amino acids long and have no known function.
Probab=30.95 E-value=64 Score=23.30 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccccee
Q 034467 25 RFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (94)
Q Consensus 25 ~Le~~L~~lE~qIy~~Et~YL~et~~~GNIi 55 (94)
.|-+.|..||++||.+ |=..-+..|-|+
T Consensus 107 ~l~~~~~~LEk~Vy~F---Y~Kkl~~gGiI~ 134 (141)
T PF02890_consen 107 SLLERILKLEKEVYEF---YNKKLPEGGIIT 134 (141)
T ss_pred HHHHHHHHHHHHHHHH---hcccCCCCCchh
Confidence 6778899999999987 444555444443
No 84
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.56 E-value=66 Score=19.13 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 034467 23 RSRFQDELRNIENQVYELET 42 (94)
Q Consensus 23 r~~Le~~L~~lE~qIy~~Et 42 (94)
-..+|..+..|..||.++|.
T Consensus 14 ~d~IEqkiedid~qIaeLe~ 33 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEA 33 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHH
Confidence 34567777777777777764
No 85
>PF14282 FlxA: FlxA-like protein
Probab=30.46 E-value=1e+02 Score=20.51 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccc
Q 034467 21 SKRSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 21 ~kr~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
.+++.|..+|..||.||..+...=-+
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766554433
No 86
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=30.37 E-value=96 Score=19.63 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034467 18 ALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qI 37 (94)
-+-+||=.|.+++..||.+|
T Consensus 42 RmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 42 RMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHhHHHHHHHHHHhh
Confidence 44456667788899999887
No 87
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=30.13 E-value=1.2e+02 Score=17.83 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
..|..|-.+=..+.+.|+.||.+|
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555544455666666666654
No 88
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.09 E-value=1.2e+02 Score=21.67 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
.++.++-+.=++.+.+++.|-+|+-.++.+|
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333333344455555555555555544
No 89
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.01 E-value=1.6e+02 Score=19.06 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
..+|+..+.+=..|+++.+.|-.+|-+
T Consensus 3 ~~~Lr~~ieRiErLEeEk~~i~~dikd 29 (74)
T PF10073_consen 3 AEQLRQFIERIERLEEEKKAISDDIKD 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999988865
No 90
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=29.45 E-value=74 Score=23.43 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034467 21 SKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 21 ~kr~~Le~~L~~lE~qIy~~ 40 (94)
+.|++|..+|.++|.+|-.+
T Consensus 29 eE~eeLr~EL~KvEeEI~TL 48 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTL 48 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776544
No 91
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.45 E-value=1e+02 Score=20.74 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et 48 (94)
+|..-..+|..++.....|+.+|-++-++.|++.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEA 35 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEA 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777788888888888888777777664
No 92
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=29.22 E-value=1.1e+02 Score=20.16 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
...-+|+.+..+|+.++..|++++-.++
T Consensus 71 alvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 71 AVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445899999999999999999886554
No 93
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.83 E-value=1e+02 Score=21.76 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
.++.++.+.-.+++++|..++..+++.+..+...
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777778888888888888888888888877654
No 94
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=28.56 E-value=92 Score=26.75 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGN 53 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GN 53 (94)
.+..+|..-+.+|+.|-..|..-|...--.|-.||++-..+|-
T Consensus 296 rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~ 338 (552)
T KOG2129|consen 296 RLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGD 338 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCC
Confidence 3566777788899899999998899999999999998765554
No 95
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.51 E-value=1.7e+02 Score=18.85 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 8 ~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
....+..+.+.+-.+=..++.++..+|.++...
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777787788888888888888888753
No 96
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.48 E-value=78 Score=23.69 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHhcc--ccccccccccceeecC
Q 034467 13 AATLAALVSKRS------RFQDELRNIENQVYELET--SYLQDIGQFGNAFKGF 58 (94)
Q Consensus 13 ~~~L~~ll~kr~------~Le~~L~~lE~qIy~~Et--~YL~et~~~GNIikGf 58 (94)
...|.+|+++-+ +++.+|..++.+|-..|+ .||++-..+..|--=|
T Consensus 148 ~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l 201 (262)
T PF14257_consen 148 EERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISL 201 (262)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEE
Confidence 344555555433 567777888888877776 3676655555554433
No 97
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=28.41 E-value=1.2e+02 Score=19.53 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
++...+++|...|..||.+|-++|.+
T Consensus 36 e~~~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777777776654
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.31 E-value=1.2e+02 Score=25.59 Aligned_cols=33 Identities=15% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL 45 (94)
.+.+..--+++.+|+++|..+|.+|-..|..-.
T Consensus 51 ~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 51 EKKIREQQDQRAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666666655443
No 99
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.29 E-value=21 Score=26.94 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.3
Q ss_pred cccceeecCcccccC
Q 034467 50 QFGNAFKGFEGFLSS 64 (94)
Q Consensus 50 ~~GNIikGfd~y~k~ 64 (94)
..|.||+|||--+.+
T Consensus 120 G~gqVIkG~Dqgl~g 134 (188)
T KOG0549|consen 120 GTGQVIKGWDQGLLG 134 (188)
T ss_pred CCCceeccHhHHhhh
Confidence 368999999977765
No 100
>cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation. DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis (TLS) and in somatic hypermutation (SHM). DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Pol theta is an exception among family A polymerases and generates processive single base substitutions. Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondri
Probab=28.09 E-value=96 Score=24.87 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034467 17 AALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
..|-...++|+.+|+.||.+||.
T Consensus 7 ~~l~~~~~~l~~~~~~le~~~~~ 29 (373)
T cd08638 7 EELERQRALLQAKLKELEEEAYR 29 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566678899999999999985
No 101
>PLN02320 seryl-tRNA synthetase
Probab=28.06 E-value=59 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 17 AALVSKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
.+|+++=++|.++|..||.++...|....+.
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555667777777777777776655443
No 102
>PRK00395 hfq RNA-binding protein Hfq; Provisional
Probab=28.01 E-value=24 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.0
Q ss_pred cccccccccccceeecCcccc
Q 034467 42 TSYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 42 t~YL~et~~~GNIikGfd~y~ 62 (94)
|-||-.-...--+|+|||+|.
T Consensus 23 tifL~NG~~l~G~I~~fD~ft 43 (79)
T PRK00395 23 TIYLVNGIKLQGQIESFDNFV 43 (79)
T ss_pred EEEEeCCcEEEEEEEEEccEE
Confidence 456665545556889999995
No 103
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=27.94 E-value=90 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccc--cccceeecCcccc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIG--QFGNAFKGFEGFL 62 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~--~~GNIikGfd~y~ 62 (94)
.|-..-.++..+|..+|++||++.+.=++-.+ +-|-|+=.=.++-
T Consensus 215 ~L~~l~~el~~~l~~le~eiy~laG~~FNi~SPKQL~~ILfeKl~Lp 261 (593)
T COG0749 215 YLKELSKELGCELAELEEEIYELAGEEFNINSPKQLGEILFEKLGLP 261 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCC
Confidence 34455678999999999999999997666332 4677764444444
No 104
>PRK14625 hypothetical protein; Provisional
Probab=27.60 E-value=1.1e+02 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+.+++++=+++++++..+++++.+.|-
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v 30 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTV 30 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 677888888899999999999987764
No 105
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.57 E-value=92 Score=27.97 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL 45 (94)
..-+|.+|..||++|..++++|-..|.++-..-+
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~ 124 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIP 124 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3568889999999999888888777766544433
No 106
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.55 E-value=34 Score=29.13 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
+++.++.++=++|+.++..|+.|+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333445555556666666666665
No 107
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=27.47 E-value=91 Score=21.53 Aligned_cols=21 Identities=19% Similarity=0.591 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHH--HHHHHHhcc
Q 034467 22 KRSRFQDELRNI--ENQVYELET 42 (94)
Q Consensus 22 kr~~Le~~L~~l--E~qIy~~Et 42 (94)
.+++|.+.+..| |..+..+|.
T Consensus 57 e~r~L~kKi~~l~veRkmr~Les 79 (109)
T PF11690_consen 57 ERRKLRKKIQDLRVERKMRALES 79 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 344455555555 666666553
No 108
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.40 E-value=1.7e+02 Score=19.25 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
.+-.+...++..+..||+++-.++.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~ 95 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLRE 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555544443
No 109
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.40 E-value=1.4e+02 Score=17.64 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
...+..|...-..|..++..|+.++..+.
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555554443
No 110
>COG5317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.10 E-value=1.2e+02 Score=22.55 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 7 ~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
|+-.++...+.+|+.+--.|......|..+||.
T Consensus 114 pgwneLP~~f~dLveRSlRLq~rVr~lDreiY~ 146 (175)
T COG5317 114 PGWNELPESFRDLVERSLRLQARVRRLDREIYG 146 (175)
T ss_pred cchhhchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556678899999999999999999999999996
No 111
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.90 E-value=73 Score=23.62 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=21.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Q 034467 12 PAATLAALV-SKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 12 ~~~~L~~ll-~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.-+.|...+ .-+++|+.+|+.|+.+|-.+|..
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 24677888899998888888753
No 112
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=26.79 E-value=67 Score=26.60 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGN 53 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GN 53 (94)
|..+...|.-..++||.+|..||+.--++-..+|+.|-.+-|
T Consensus 226 lkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~ 267 (410)
T KOG4715|consen 226 LKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNN 267 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 456777888888999999999999988888888887753333
No 113
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=26.62 E-value=1.6e+02 Score=20.22 Aligned_cols=19 Identities=21% Similarity=0.635 Sum_probs=13.1
Q ss_pred cccccccccceeecCc-ccc
Q 034467 44 YLQDIGQFGNAFKGFE-GFL 62 (94)
Q Consensus 44 YL~et~~~GNIikGfd-~y~ 62 (94)
++++-...|-+|||+| |-+
T Consensus 62 ~i~~i~~~Gv~vKd~~~gLv 81 (120)
T PF09969_consen 62 LIDEIEELGVEVKDLDPGLV 81 (120)
T ss_pred HHHHHHHcCcEEeCCcceeE
Confidence 3444456899999998 443
No 114
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=26.46 E-value=1.8e+02 Score=20.14 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
.++++.|++ ++.+|..+|..|-+.|+-+
T Consensus 80 ~~~~~~l~~-------~~~~~~~~e~Rl~~mE~yV 107 (121)
T TIGR02978 80 QSPRQALRE-------VKREFRDLERRLRNMERYV 107 (121)
T ss_pred CCHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 446666665 5666666777776666544
No 115
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.40 E-value=1.1e+02 Score=24.88 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
.++++++..+..+...++.++..++.+|.+..
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567778888888888888888888886664
No 116
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=26.29 E-value=1.5e+02 Score=22.00 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
..+......|-..-+.+++++..+|+++..+|..|...
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~q 226 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQ 226 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666677777777777777777777654
No 117
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=25.98 E-value=1.6e+02 Score=18.62 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
++|.++..++-+++..+..|+.++...
T Consensus 37 ~~le~l~~q~~k~~~~~~~L~~~~~r~ 63 (80)
T PF11488_consen 37 KELEELYQQDCKTEMEVKMLETQDPRD 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 444444444444445555555444433
No 118
>PRK14622 hypothetical protein; Provisional
Probab=25.88 E-value=1.2e+02 Score=20.26 Aligned_cols=27 Identities=7% Similarity=0.334 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+.+|+++=+++++++.++++++-+.|-
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v 29 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAV 29 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 567888888999999999999887653
No 119
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.82 E-value=1.6e+02 Score=19.17 Aligned_cols=9 Identities=78% Similarity=0.885 Sum_probs=4.2
Q ss_pred HHHHHHHhc
Q 034467 33 IENQVYELE 41 (94)
Q Consensus 33 lE~qIy~~E 41 (94)
||.+|-.+|
T Consensus 71 Ie~~V~~LE 79 (99)
T PF10046_consen 71 IEEQVTELE 79 (99)
T ss_pred HHHHHHHHH
Confidence 333555554
No 120
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=25.79 E-value=1.7e+02 Score=19.71 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+..++..+.....+|+..|.-||.|--++|...
T Consensus 62 L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 62 LYSEVQKAESEQKRLDQELDFIEAQQKELEELL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888899999999999988877643
No 121
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.63 E-value=1.8e+02 Score=24.87 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 9 ~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
...+.+.++++-++.++++++++.++++|.+.-
T Consensus 210 ~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~ 242 (646)
T PRK05771 210 EGTPSELIREIKEELEEIEKERESLLEELKELA 242 (646)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777766543
No 122
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=25.51 E-value=1.6e+02 Score=22.14 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
-.++-.++.+|.+|.+++..|..+|-+
T Consensus 241 ~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 241 FEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666788888899999999888753
No 123
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=25.44 E-value=1.3e+02 Score=23.40 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
...+..|.++-+++.+....|..||+.--.+|.
T Consensus 25 E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~ 57 (236)
T PF12269_consen 25 EQNRKLLEEIRKKQQKVRNRLQELEKRFKELEA 57 (236)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888889888888888888888886555554
No 124
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.88 E-value=1.5e+02 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+++..+..++..++.++.++..++.++-..|..
T Consensus 42 ~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 42 KARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888999999999998888877753
No 125
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.81 E-value=1.8e+02 Score=21.43 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
.+..|...+..++.++.++..++..|-+.|.
T Consensus 43 ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 43 VRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888888888888777654
No 126
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.58 E-value=1.4e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL 45 (94)
++..+|.++..++.+|++++..+..+|-+.|....
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776666666666555555443
No 127
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.49 E-value=1.2e+02 Score=17.76 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034467 23 RSRFQDELRNIENQVYE 39 (94)
Q Consensus 23 r~~Le~~L~~lE~qIy~ 39 (94)
-+++.++++++|+++-.
T Consensus 50 ~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566677777776643
No 128
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.39 E-value=93 Score=24.39 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeecCcc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEG 60 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIikGfd~ 60 (94)
+++|.++..++..++..++.++.++-.++...=+-.. ..+-.+||..
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~-~~~~~r~~t~ 275 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK-IREECRGWTR 275 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Confidence 4455555666666666666666555555544333221 3344456653
No 129
>KOG1780 consensus Small Nuclear ribonucleoprotein G [RNA processing and modification]
Probab=24.35 E-value=30 Score=22.65 Aligned_cols=12 Identities=17% Similarity=0.742 Sum_probs=10.0
Q ss_pred cceeecCccccc
Q 034467 52 GNAFKGFEGFLS 63 (94)
Q Consensus 52 GNIikGfd~y~k 63 (94)
--|++|||-|..
T Consensus 28 ~GiLrGyD~FmN 39 (77)
T KOG1780|consen 28 TGILRGYDPFMN 39 (77)
T ss_pred EEEEeccchHHh
Confidence 359999999975
No 130
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.14 E-value=1.8e+02 Score=18.90 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 034467 19 LVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
+-.+-+.|+.++..|++++-++
T Consensus 75 le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 131
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.10 E-value=1.6e+02 Score=24.34 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
.++.++-.+.++++++|..|++++-.+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555555555555555554444
No 132
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=24.04 E-value=1.3e+02 Score=25.11 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=43.0
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--------cccccceeecCccc
Q 034467 2 SLRQQRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD--------IGQFGNAFKGFEGF 61 (94)
Q Consensus 2 ~~~~q~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e--------t~~~GNIikGfd~y 61 (94)
++.+++-+++=.+.|+.|-..=..|.++|..++.+|-.---.+.+- ...-.+|+.||...
T Consensus 116 ~~~g~~lt~~e~~tL~~L~~~a~~l~~~L~~~q~~v~~g~l~w~~~~~~~~~~~~~~~~~~~~~f~~v 183 (435)
T TIGR02889 116 DAEGKSLSDKEYKTLTTLYNQAVKLENQLRKVQNIVMQGGVRWGEIRKLYSGDEAQMPEAILNDFKDV 183 (435)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhHhhhhccccccCCcchhhHHHHH
Confidence 4568888889999999999999999999999999995433322221 11234567777643
No 133
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.01 E-value=1.8e+02 Score=19.24 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
+..+..+.++-...+..|..||.+|-.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5666677777777788888888776554
No 134
>PRK14626 hypothetical protein; Provisional
Probab=23.95 E-value=1.5e+02 Score=20.14 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
|.+++++=++++.++.++++++...|-+
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~v~ 34 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEEIV 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 7788888889999999999999877643
No 135
>PF15463 ECM11: Extracellular mutant protein 11
Probab=23.89 E-value=2e+02 Score=19.89 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
...+..|.+.|+++-...+.+|..|-+.+..
T Consensus 86 ~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea 116 (139)
T PF15463_consen 86 SELMQKLKEARRKLRKKFAVFEDEINRRAEA 116 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999887654
No 136
>COG3418 Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=1.8e+02 Score=21.20 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
...|.++++.|.-|-..|.-+++.+...|.+|
T Consensus 37 ~~~lq~i~~qK~sLl~~L~~l~Q~R~~~~~~a 68 (146)
T COG3418 37 GSVLQEITEQKSSLLATLDYLDQDRAKEPNEA 68 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhc
Confidence 46899999999999999999999999888765
No 137
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.64 E-value=2.1e+02 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034467 21 SKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 21 ~kr~~Le~~L~~lE~qIy~~ 40 (94)
++...|++.+..|+++|-..
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~ 113 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKL 113 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 138
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=23.53 E-value=31 Score=21.47 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=13.6
Q ss_pred cccccccccccceeecCcccc
Q 034467 42 TSYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 42 t~YL~et~~~GNIikGfd~y~ 62 (94)
+-||-.--..--+|+|||+|.
T Consensus 19 ti~L~nG~~l~G~I~~fD~ft 39 (61)
T TIGR02383 19 TVFLVNGVQLKGVIESFDNFT 39 (61)
T ss_pred EEEEeCCcEEEEEEEEEeeeE
Confidence 345554434445788999995
No 139
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.51 E-value=2e+02 Score=18.62 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
..+....++||.-=..||.++..||++|-++
T Consensus 50 ~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 50 SSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777776654
No 140
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.45 E-value=2.3e+02 Score=18.74 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
+.+..|-+...+|++++..+.++|-.
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 141
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.27 E-value=1.8e+02 Score=18.27 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL 45 (94)
.+...|..+..+...++..+..|+..+-..+..+-
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~ 38 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAA 38 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888887777766543
No 142
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=23.21 E-value=33 Score=21.31 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=12.8
Q ss_pred ccccccccccceeecCcccc
Q 034467 43 SYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 43 ~YL~et~~~GNIikGfd~y~ 62 (94)
-||-+--..--.|+|||+|.
T Consensus 16 v~L~NG~~l~G~I~~fD~ft 35 (61)
T cd01716 16 IYLVNGVQLKGQIESFDNFT 35 (61)
T ss_pred EEEeCCcEEEEEEEEEcceE
Confidence 45544334445788999995
No 143
>PRK11637 AmiB activator; Provisional
Probab=22.73 E-value=1.7e+02 Score=23.52 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 034467 12 PAATLAAL 19 (94)
Q Consensus 12 ~~~~L~~l 19 (94)
+.++|.++
T Consensus 45 ~~~~l~~l 52 (428)
T PRK11637 45 NRDQLKSI 52 (428)
T ss_pred hHHHHHHH
Confidence 33333333
No 144
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.72 E-value=1.7e+02 Score=22.23 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~ 49 (94)
...++..+...+..|+.++..+|+++-+.+..|-.|..
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~ 170 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIF 170 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677778888889999999999999999999988775
No 145
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=22.72 E-value=1.5e+02 Score=25.26 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 034467 24 SRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~Et~YL 45 (94)
++|+++++.||++|..+|...-
T Consensus 566 ~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 566 ARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3688888888888888887754
No 146
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding the strand specificity of DNA polymerase during DNA replication in vivo. However, mutation analysis supports the hypothesis that DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand.
Probab=22.69 E-value=2e+02 Score=23.22 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccccccccccccceeecCccccc
Q 034467 10 SNPAATLAALVSKRSRFQDELRN----IENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~----lE~qIy~~Et~YL~et~~~GNIikGfd~y~k 63 (94)
+=+...|++|+..|+++.+.+++ .+..+|+....=|.-+. |.+=||=||..
T Consensus 74 Gilp~iL~~Ll~~R~~~K~~mk~~~d~~~~~~ld~~Q~AlKi~~---NS~YG~~G~~~ 128 (393)
T cd05533 74 GLLPEILEELLAARKRAKKDLKEETDPFKKAVLDGRQLALKISA---NSVYGFTGATV 128 (393)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhheee---eeccccccccc
Confidence 44678999999999999888875 45566665544444332 55555555443
No 147
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.58 E-value=1.7e+02 Score=23.83 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
.+..+.+..+.+.+.+|.+.+..|+.++..++...-.
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777777777777777766654443
No 148
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.54 E-value=1.8e+02 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL 45 (94)
..++.++...+.+++.++..++++|-..+...-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888999999999999998888753
No 149
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.54 E-value=1.9e+02 Score=21.47 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
.|..++.+=+.|..+..-||.++-+++-.||..
T Consensus 138 ~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL~~ 170 (171)
T PF04799_consen 138 RLEEIQSKSKTLRNKANWLESELERFQEQYLQK 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344455555566666677778888888888764
No 150
>PRK00153 hypothetical protein; Validated
Probab=22.24 E-value=1.6e+02 Score=19.26 Aligned_cols=29 Identities=10% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+.+++++=+++.+++..+++++-..+-+.
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~ 33 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEG 33 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 66778888889999999999998777543
No 151
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.23 E-value=2e+02 Score=21.47 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=5.6
Q ss_pred ceeecCccccc
Q 034467 53 NAFKGFEGFLS 63 (94)
Q Consensus 53 NIikGfd~y~k 63 (94)
.++.+.+.|+.
T Consensus 109 ~m~~~L~~~v~ 119 (251)
T PF11932_consen 109 QMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHh
Confidence 34455555554
No 152
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.91 E-value=1.9e+02 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
.+.-++++-++-..+.++|+.||++||.+
T Consensus 293 vk~vv~el~k~~~~f~~qleELeehv~lC 321 (336)
T PF05055_consen 293 VKEVVKELKKNVESFTEQLEELEEHVYLC 321 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999864
No 153
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=21.87 E-value=1.8e+02 Score=22.91 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELET-SYLQ 46 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et-~YL~ 46 (94)
.+..+|.-+....++||.-|..||.+.-..++ .|+.
T Consensus 131 rLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~ 167 (254)
T KOG2196|consen 131 RLDQELEFILSQQQELEDLLDPLETKLELQSGHTYLS 167 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence 46778888888999999999999999988888 6654
No 154
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.70 E-value=2.4e+02 Score=18.33 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
....-|..++.+|+.+++.|+..+-.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~ 104 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAY 104 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666665543
No 155
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=21.59 E-value=21 Score=27.17 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.4
Q ss_pred CCCCCCCCccccCCCCCCC
Q 034467 74 PRKLQPEDRIFSLSSVTSP 92 (94)
Q Consensus 74 ~~~~~d~DRiFS~SS~ts~ 92 (94)
...++..|||..||.|++.
T Consensus 206 ~v~~~~~dkilTLSTC~~~ 224 (232)
T TIGR03064 206 DVKVTVNDKIITLSTCDYE 224 (232)
T ss_pred CCCCCCCCeEEEEeCCCCC
Confidence 3556778999999999874
No 156
>PRK14623 hypothetical protein; Provisional
Probab=21.44 E-value=1.7e+02 Score=19.78 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+.+++++=+++++++.++++++.+.|-+
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~v~ 30 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVLID 30 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 5677888888999999999999887743
No 157
>PF01517 HDV_ag: Hepatitis delta virus delta antigen; InterPro: IPR002506 The Hepatitis delta virus (HDV) encodes a single protein, the hepatitis delta antigen (HDAg). The central region of this protein has been shown to bind RNA []. Several interactions are also mediated by a coiled-coil region at the N terminus of the protein [].; GO: 0003723 RNA binding, 0042025 host cell nucleus; PDB: 1A92_D 1BY0_A.
Probab=21.43 E-value=1.3e+02 Score=22.54 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=25.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcccccccccccccee
Q 034467 14 ATLAALVSKRS---RFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (94)
Q Consensus 14 ~~L~~ll~kr~---~Le~~L~~lE~qIy~~Et~YL~et~~~GNIi 55 (94)
..|.+.+.-|+ +|+.+|..+-+.|-.+|- +.+-.|||.
T Consensus 15 ~~le~wv~~rk~~eeler~lrk~~k~ikkled----~npwlgni~ 55 (194)
T PF01517_consen 15 EILEQWVSGRKKAEELERDLRKAKKKIKKLED----DNPWLGNIK 55 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCccchhhh
Confidence 45666666555 456699999999988874 334467864
No 158
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.37 E-value=1.8e+02 Score=18.80 Aligned_cols=24 Identities=13% Similarity=0.491 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 16 LAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
|.++.+.-.+|.++|.+||...-.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777788888877766554
No 159
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.24 E-value=1.7e+02 Score=27.67 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
.+.++.+|...|+.|.+++..+|.+|.++
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadl 436 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADL 436 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888887765
No 160
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=21.14 E-value=2.9e+02 Score=19.11 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 9 ~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
..++++.|++ ++.+|..+|..|-+.|.-+
T Consensus 76 ~~s~~~~l~~-------~~~~~~~~e~Rlr~mE~yV 104 (118)
T PRK10697 76 QPSSSELLDE-------VDRELAAGEQRLREMERYV 104 (118)
T ss_pred CCCHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 3456666665 5566666666666666533
No 161
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.04 E-value=2.5e+02 Score=22.33 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=29.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 6 q~~~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
..+.+.|--.|+.|+..|+.|.+++..|..|+...
T Consensus 211 ~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 211 SAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788889999999999999999999998653
No 162
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.95 E-value=95 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 034467 8 GNSNPAATLAALVSKRSRF 26 (94)
Q Consensus 8 ~~~~~~~~L~~ll~kr~~L 26 (94)
+-..+.++|..|...|.++
T Consensus 12 g~~~L~~EL~~L~~~r~~i 30 (158)
T PRK05892 12 ARDHLEAELARLRARRDRL 30 (158)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3445566666666555444
No 163
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.94 E-value=2.6e+02 Score=18.37 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
..-|.++++.|+++++.|+..+-..+
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (116)
T cd04769 81 QQALEDKKQEIRAQITELQQLLARLD 106 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666654443
No 164
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.86 E-value=2.5e+02 Score=18.10 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034467 22 KRSRFQDELRNIENQVYE 39 (94)
Q Consensus 22 kr~~Le~~L~~lE~qIy~ 39 (94)
+.+.|++.+..++++|-.
T Consensus 85 r~~~l~~~~~~l~~~~~~ 102 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAE 102 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 165
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=20.84 E-value=1.7e+02 Score=17.61 Aligned_cols=47 Identities=15% Similarity=0.378 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhccccccccccccceeecCccccc
Q 034467 13 AATLAALVSKRSRFQDE----LRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~----L~~lE~qIy~~Et~YL~et~~~GNIikGfd~y~k 63 (94)
-.+|..++++|..||++ |.+|-.+....-. .....|.+-..|+.++.
T Consensus 25 ~~~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~----~~~~~~t~~~~~~~~~~ 75 (91)
T PF00611_consen 25 LEELASFFKERASLEEEYAKSLQKLAKKFKKKMK----SSQEYGTLKNAWDSLLE 75 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCCccHHHHHHHHHHH
Confidence 46778888888888865 4455555443221 12224666667766553
No 166
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.80 E-value=2e+02 Score=24.22 Aligned_cols=30 Identities=37% Similarity=0.385 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
++++..+-++.....++..+||++|-+.|+
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~ 73 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLET 73 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555554444
No 167
>PRK10698 phage shock protein PspA; Provisional
Probab=20.80 E-value=2.4e+02 Score=21.11 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+..+...+..++.++.++..++..|-+.|
T Consensus 44 r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 44 RSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777777777777766654
No 168
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.66 E-value=2.2e+02 Score=23.37 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
.+.++.+++-++-++|++++..||.+|..
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888999999999999999999987
No 169
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.65 E-value=2.3e+02 Score=20.18 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.+..+|..+-..|..|+..|.....+|-.+|+.
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777887777778777764
No 170
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.59 E-value=2.3e+02 Score=21.49 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
...+..+-....+|...+..||.+|-++++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 105 EAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666655
No 171
>PRK14621 hypothetical protein; Provisional
Probab=20.56 E-value=1.9e+02 Score=19.68 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+.+++++=+++++++.++++++-+.|-
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~~~v 32 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEKLVA 32 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccEE
Confidence 677888888899999999999976553
No 172
>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuc
Probab=20.32 E-value=1.7e+02 Score=23.44 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 17 AALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
..|-+.+++|+.+|+.||++||++
T Consensus 3 ~~l~~~~~~~~~~~~~l~~~~~~l 26 (377)
T cd08637 3 EYLEELSEELEKELAELEEEIYEL 26 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999975
No 173
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=20.26 E-value=2e+02 Score=20.15 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034467 17 AALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qI 37 (94)
.++.+||+++-.+|..++++.
T Consensus 65 ~e~~~kr~~Vl~~l~~l~~~~ 85 (133)
T PF09440_consen 65 AELAEKREEVLAELKELEEET 85 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999998763
No 174
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.25 E-value=2.5e+02 Score=20.98 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034467 22 KRSRFQDELRNIENQV 37 (94)
Q Consensus 22 kr~~Le~~L~~lE~qI 37 (94)
.+..|..++..++.+|
T Consensus 50 e~~~L~~e~~~l~~e~ 65 (251)
T PF11932_consen 50 EKQELLAEYRQLEREI 65 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 175
>PHA01750 hypothetical protein
Probab=20.19 E-value=1.7e+02 Score=18.89 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 034467 31 RNIENQVY 38 (94)
Q Consensus 31 ~~lE~qIy 38 (94)
+.||+||.
T Consensus 59 Dnl~~qv~ 66 (75)
T PHA01750 59 DELSRQVE 66 (75)
T ss_pred HHHHHHHH
Confidence 33444444
No 176
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=20.12 E-value=1.9e+02 Score=19.07 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 034467 20 VSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 20 l~kr~~Le~~L~~lE~qIy~~Et 42 (94)
-.-+..+++.|+.+++.|+.+|-
T Consensus 56 ~da~a~i~ekl~d~te~l~~LEk 78 (82)
T COG5460 56 KDARAVIEEKLADMTEELFALEK 78 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788899999999998885
No 177
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.01 E-value=2.4e+02 Score=22.79 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
Q 034467 12 PAATLAALVSK----------RSRFQDELRNIENQVYELE 41 (94)
Q Consensus 12 ~~~~L~~ll~k----------r~~Le~~L~~lE~qIy~~E 41 (94)
+.+++.+|..+ +++++++|+.+|++|-+.+
T Consensus 254 ~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 254 LEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Done!