Query 034467
Match_columns 94
No_of_seqs 100 out of 168
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 04:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 84.7 1.3 4.4E-05 22.8 3.2 25 17-41 3-27 (28)
2 3he4_A Synzip6; heterodimeric 78.8 5.1 0.00017 23.4 4.8 25 19-43 29-53 (56)
3 4abm_A Charged multivesicular 77.8 2.7 9.3E-05 26.2 3.7 29 15-43 46-74 (79)
4 2fxo_A Myosin heavy chain, car 70.1 7.3 0.00025 25.8 4.6 30 14-43 97-126 (129)
5 2l5g_B Putative uncharacterize 68.9 8.1 0.00028 21.8 3.8 23 18-40 6-28 (42)
6 2akf_A Coronin-1A; coiled coil 68.8 11 0.00037 19.9 4.3 29 11-39 3-31 (32)
7 1kd8_A GABH AIV, GCN4 acid bas 68.8 12 0.00041 20.4 4.8 30 12-41 6-35 (36)
8 3ljm_A Coil Ser L9C; de novo d 68.2 11 0.00037 19.6 3.9 26 17-42 4-29 (31)
9 2zvf_A Alanyl-tRNA synthetase; 67.3 11 0.00038 25.2 5.1 38 10-47 28-66 (171)
10 1gp8_A Protein (scaffolding pr 65.1 4.6 0.00016 22.6 2.2 18 27-44 7-26 (40)
11 2pnv_A Small conductance calci 65.1 14 0.00047 20.7 4.3 29 14-42 9-37 (43)
12 1l8d_A DNA double-strand break 63.5 22 0.00076 22.2 5.7 44 12-56 15-58 (112)
13 3c3g_A Alpha/beta peptide with 63.5 13 0.00044 19.9 3.8 24 12-35 5-28 (33)
14 1a93_B MAX protein, coiled coi 62.1 17 0.00057 19.6 5.0 31 11-41 4-34 (34)
15 2oqq_A Transcription factor HY 59.3 21 0.0007 20.1 4.3 28 14-41 3-30 (42)
16 2bni_A General control protein 58.2 18 0.00062 19.5 3.8 24 12-35 6-29 (34)
17 3nmd_A CGMP dependent protein 57.1 20 0.0007 22.2 4.4 30 13-42 21-54 (72)
18 1nkp_B MAX protein, MYC proto- 56.3 21 0.00073 21.5 4.5 24 17-40 57-80 (83)
19 2yy0_A C-MYC-binding protein; 56.1 20 0.00069 20.6 4.1 28 11-38 23-50 (53)
20 2r2v_A GCN4 leucine zipper; co 56.0 22 0.00075 19.1 4.1 24 12-35 6-29 (34)
21 3etw_A Adhesin A; antiparallel 53.6 23 0.00079 23.8 4.6 27 16-42 77-103 (119)
22 4etp_A Kinesin-like protein KA 53.3 15 0.00051 28.7 4.2 39 10-48 6-44 (403)
23 1wt6_A Myotonin-protein kinase 53.2 30 0.001 21.9 4.8 29 12-40 43-71 (81)
24 2wuj_A Septum site-determining 51.3 14 0.00047 21.4 2.8 25 13-37 33-57 (57)
25 1t3j_A Mitofusin 1; coiled coi 51.3 12 0.00041 24.4 2.8 34 10-43 35-69 (96)
26 1zme_C Proline utilization tra 50.8 23 0.00078 20.0 3.8 25 13-37 43-67 (70)
27 3c3f_A Alpha/beta peptide with 50.7 28 0.00095 18.7 3.8 24 12-35 6-29 (34)
28 2avr_X Adhesion A; antiparalle 49.0 5.5 0.00019 27.0 0.9 42 16-62 43-84 (119)
29 3q8t_A Beclin-1; autophagy, AT 48.3 36 0.0012 21.5 4.8 37 12-48 23-62 (96)
30 3s4r_A Vimentin; alpha-helix, 47.6 30 0.001 21.8 4.3 30 11-40 60-89 (93)
31 1fxk_A Prefoldin; archaeal pro 46.8 37 0.0013 20.8 4.6 28 15-42 66-93 (107)
32 3u06_A Protein claret segregat 46.8 22 0.00074 28.0 4.2 36 11-46 7-42 (412)
33 2q6q_A Spindle POLE BODY compo 46.7 45 0.0015 20.7 4.8 36 12-47 29-64 (74)
34 1gmj_A ATPase inhibitor; coile 46.2 40 0.0014 21.4 4.6 28 15-42 38-65 (84)
35 1l8d_A DNA double-strand break 45.5 38 0.0013 21.1 4.6 32 13-44 70-101 (112)
36 2zqm_A Prefoldin beta subunit 45.1 45 0.0015 20.7 4.8 27 16-42 72-98 (117)
37 3hnw_A Uncharacterized protein 45.1 37 0.0012 22.9 4.6 28 16-43 105-132 (138)
38 1a92_A Delta antigen; leucine 44.3 14 0.00048 21.5 2.0 31 21-55 14-44 (50)
39 1rtm_1 Mannose-binding protein 44.1 38 0.0013 21.5 4.5 26 12-37 2-27 (149)
40 1ses_A Seryl-tRNA synthetase; 44.0 25 0.00087 27.5 4.2 41 14-54 64-104 (421)
41 3qao_A LMO0526 protein, MERR-l 43.6 39 0.0013 24.4 4.9 32 12-43 81-112 (249)
42 2zqm_A Prefoldin beta subunit 43.3 47 0.0016 20.6 4.7 28 13-40 83-110 (117)
43 3viq_A SWI5-dependent recombin 42.5 27 0.00094 23.3 3.6 26 18-43 4-29 (122)
44 1uo4_A General control protein 41.4 41 0.0014 18.0 3.8 23 12-34 6-28 (34)
45 3hnw_A Uncharacterized protein 41.4 38 0.0013 22.8 4.3 28 13-40 67-94 (138)
46 2wq1_A General control protein 40.8 42 0.0014 17.9 4.1 24 12-35 5-28 (33)
47 2gkw_A TNF receptor-associated 40.7 50 0.0017 22.5 4.9 33 12-44 5-37 (192)
48 2aze_B Transcription factor E2 39.8 59 0.002 21.0 4.8 31 11-41 10-40 (106)
49 3cve_A Homer protein homolog 1 39.7 53 0.0018 20.2 4.4 29 11-39 4-32 (72)
50 3gpv_A Transcriptional regulat 39.4 52 0.0018 21.8 4.7 19 19-37 100-118 (148)
51 1gk7_A Vimentin; intermediate 38.6 47 0.0016 17.9 4.5 27 12-38 11-37 (39)
52 1r8d_A Transcription activator 38.5 55 0.0019 20.3 4.5 22 19-40 80-101 (109)
53 2oxj_A Hybrid alpha/beta pepti 38.3 47 0.0016 17.8 3.8 24 12-35 6-29 (34)
54 3kin_B Kinesin heavy chain; mo 38.2 63 0.0022 21.0 4.8 28 12-39 87-114 (117)
55 1fxk_A Prefoldin; archaeal pro 38.1 64 0.0022 19.6 4.7 27 13-39 78-104 (107)
56 2eqb_B RAB guanine nucleotide 37.6 50 0.0017 21.4 4.2 37 12-48 31-67 (97)
57 1wle_A Seryl-tRNA synthetase; 37.4 33 0.0011 27.7 4.0 31 15-45 117-147 (501)
58 2dq0_A Seryl-tRNA synthetase; 36.9 29 0.00098 27.5 3.5 27 18-44 73-99 (455)
59 1j1d_B Troponin T, TNT; THIN f 36.8 49 0.0017 21.6 4.1 27 18-44 46-72 (106)
60 1ic2_A Tropomyosin alpha chain 36.5 69 0.0024 19.3 4.6 30 13-42 26-55 (81)
61 1yhn_B RILP, RAB interacting l 36.2 45 0.0015 20.3 3.5 35 14-48 3-37 (65)
62 3gp4_A Transcriptional regulat 35.7 65 0.0022 21.2 4.7 24 18-41 92-115 (142)
63 3hh0_A Transcriptional regulat 35.6 72 0.0025 21.1 4.9 28 15-42 88-115 (146)
64 2fxo_A Myosin heavy chain, car 35.5 54 0.0018 21.5 4.2 31 12-42 67-97 (129)
65 3bas_A Myosin heavy chain, str 35.1 52 0.0018 20.3 3.9 22 15-36 64-85 (89)
66 1z0k_B FYVE-finger-containing 34.9 28 0.00096 21.3 2.5 20 24-43 49-68 (69)
67 2er8_A Regulatory protein Leu3 34.7 33 0.0011 19.5 2.7 18 24-41 52-69 (72)
68 1ci6_A Transcription factor AT 34.6 69 0.0024 18.6 4.8 25 13-37 29-53 (63)
69 3u06_A Protein claret segregat 34.5 53 0.0018 25.7 4.6 33 11-43 14-46 (412)
70 2ke4_A CDC42-interacting prote 34.5 33 0.0011 22.0 2.9 42 12-54 13-57 (98)
71 1ytz_T Troponin T; muscle, THI 34.4 48 0.0017 21.6 3.8 26 19-44 47-72 (107)
72 1q08_A Zn(II)-responsive regul 34.3 75 0.0026 18.9 4.7 27 15-41 40-66 (99)
73 1buu_A Protein (mannose-bindin 33.9 60 0.0021 21.2 4.3 27 10-36 19-45 (168)
74 3qne_A Seryl-tRNA synthetase, 33.8 34 0.0012 27.7 3.5 26 19-44 76-101 (485)
75 2lw1_A ABC transporter ATP-bin 33.5 69 0.0024 19.5 4.2 26 13-38 21-46 (89)
76 2pms_C Pneumococcal surface pr 33.4 54 0.0019 22.2 4.0 27 16-42 63-89 (125)
77 2vz4_A Tipal, HTH-type transcr 32.7 78 0.0027 19.6 4.5 17 21-37 81-97 (108)
78 4g1a_A AQ-C16C19 peptide; heli 32.6 23 0.00077 18.5 1.5 24 19-42 5-28 (32)
79 3rrk_A V-type ATPase 116 kDa s 32.5 68 0.0023 23.6 4.8 30 12-41 104-136 (357)
80 3cvf_A Homer-3, homer protein 32.4 69 0.0024 19.9 4.1 31 9-39 8-38 (79)
81 2lxm_B Charged multivesicular 32.1 22 0.00075 21.1 1.6 25 24-48 23-48 (57)
82 4dac_A Computationally designe 31.9 41 0.0014 17.0 2.4 19 25-43 5-23 (28)
83 2avr_X Adhesion A; antiparalle 31.8 82 0.0028 21.1 4.6 28 16-43 77-104 (119)
84 3u1c_A Tropomyosin alpha-1 cha 31.5 86 0.0029 19.8 4.6 30 13-42 29-58 (101)
85 2wg5_A General control protein 31.4 49 0.0017 21.2 3.4 42 14-59 7-48 (109)
86 1yzm_A FYVE-finger-containing 31.3 36 0.0012 19.7 2.4 20 24-43 31-50 (51)
87 3lss_A Seryl-tRNA synthetase; 31.0 33 0.0011 27.7 3.0 27 20-46 109-136 (484)
88 3viq_B Mating-type switching p 30.9 56 0.0019 20.7 3.5 23 20-42 7-29 (85)
89 3ctw_B RCDA; protein binding; 30.6 52 0.0018 23.3 3.6 31 9-39 115-145 (169)
90 2yfv_C SCM3, KLLA0F05115P; cel 29.7 95 0.0032 18.7 4.7 30 17-47 21-50 (63)
91 3m48_A General control protein 29.6 68 0.0023 17.0 3.8 23 12-34 5-27 (33)
92 1pwb_A SP-D, PSP-D, pulmonary 29.3 61 0.0021 21.3 3.7 28 8-35 25-52 (177)
93 1kd8_B GABH BLL, GCN4 acid bas 28.9 74 0.0025 17.2 4.5 26 12-37 6-31 (36)
94 3swk_A Vimentin; cytoskeleton, 28.5 83 0.0028 19.4 4.0 37 11-47 4-40 (86)
95 2hy6_A General control protein 28.4 74 0.0025 17.0 4.1 24 12-35 6-29 (34)
96 1fmh_A General control protein 28.2 50 0.0017 17.2 2.4 18 25-42 5-22 (33)
97 3kdq_A Uncharacterized conserv 28.2 76 0.0026 21.8 4.1 26 15-40 5-30 (154)
98 2yo3_A General control protein 28.1 90 0.0031 23.6 4.8 33 11-43 220-252 (268)
99 3mq9_A Bone marrow stromal ant 28.0 82 0.0028 23.9 4.6 31 13-43 435-465 (471)
100 1d7m_A Cortexillin I; coiled-c 27.6 83 0.0029 20.5 3.9 24 17-40 21-44 (101)
101 1go4_E MAD1 (mitotic arrest de 27.5 1.1E+02 0.0036 19.9 4.5 28 12-39 17-44 (100)
102 2z5i_A TM, general control pro 27.2 63 0.0021 18.3 3.0 17 24-40 15-31 (52)
103 3qks_A DNA double-strand break 26.4 1.2E+02 0.0041 20.4 4.9 33 9-41 163-195 (203)
104 3u59_A Tropomyosin beta chain; 26.0 1.2E+02 0.0042 18.8 4.6 31 13-43 29-59 (101)
105 1z0j_B FYVE-finger-containing 25.7 54 0.0018 19.5 2.5 21 24-44 38-58 (59)
106 1fxk_C Protein (prefoldin); ar 25.6 78 0.0027 20.3 3.6 30 13-42 14-43 (133)
107 4dnd_A Syntaxin-10, SYN10; str 25.5 81 0.0028 20.9 3.8 23 20-42 66-88 (130)
108 2w6a_A ARF GTPase-activating p 25.5 1.1E+02 0.0039 18.3 4.5 29 13-41 26-54 (63)
109 1aq5_A Matrilin-1, CMP, cartil 25.3 1E+02 0.0034 17.5 4.5 24 14-37 23-46 (47)
110 3uux_B Mitochondrial division 24.9 1.1E+02 0.0039 22.8 4.8 33 12-44 182-214 (242)
111 2qtx_A Uncharacterized protein 24.8 20 0.00067 22.1 0.5 20 43-62 30-49 (71)
112 1j1d_C Troponin I, TNI; THIN f 24.6 1E+02 0.0034 20.9 4.1 27 18-44 62-88 (133)
113 3gpv_A Transcriptional regulat 24.6 1.1E+02 0.0039 20.1 4.4 31 12-42 100-130 (148)
114 1r8e_A Multidrug-efflux transp 24.5 1.2E+02 0.0042 21.0 4.8 22 16-37 88-109 (278)
115 3s4r_A Vimentin; alpha-helix, 24.4 1.2E+02 0.0042 18.9 4.3 31 11-41 13-43 (93)
116 1hx1_B BAG-1, BAG-family molec 23.9 1.2E+02 0.0042 20.2 4.3 37 13-49 10-46 (114)
117 2lhr_A Iron-regulated surface 23.8 30 0.001 21.6 1.2 12 31-42 23-34 (78)
118 1nei_A Hypothetical protein YO 23.7 9.7 0.00033 22.9 -1.1 8 53-60 44-51 (60)
119 3l8w_A Uricase, urate oxidase; 23.6 39 0.0013 25.9 2.0 7 80-86 175-181 (296)
120 1jnm_A Proto-oncogene C-JUN; B 23.3 1.1E+02 0.0038 17.4 4.6 30 12-41 27-56 (62)
121 2yzc_A Uricase; oxidoreductase 22.9 40 0.0014 25.9 2.0 22 57-86 162-184 (302)
122 1u1s_A HFQ protein; SM-like ba 22.9 22 0.00077 22.4 0.5 21 42-62 23-43 (82)
123 3uly_B Charged multivesicular 22.4 64 0.0022 19.7 2.5 26 24-49 11-37 (69)
124 3ahu_A Protein HFQ; SM-like mo 22.4 23 0.0008 22.1 0.5 21 42-62 27-47 (78)
125 2zxx_A Geminin; coiled-coil, c 22.2 1.5E+02 0.0051 18.4 4.6 29 13-41 26-54 (79)
126 1lwu_B Fibrinogen beta chain; 22.2 1E+02 0.0035 23.5 4.2 31 13-43 27-57 (323)
127 2wt7_A Proto-oncogene protein 22.0 1.2E+02 0.0042 17.3 4.7 31 11-41 27-57 (63)
128 3ol1_A Vimentin; structural ge 21.9 1.2E+02 0.0041 19.6 4.0 34 11-44 24-57 (119)
129 2e50_A Protein SET; histone ch 21.6 1.6E+02 0.0055 21.1 5.0 39 10-48 22-64 (225)
130 2v66_B Nuclear distribution pr 21.5 1.7E+02 0.0057 19.2 4.6 33 11-43 39-71 (111)
131 1lwu_C Fibrinogen gamma chain; 21.4 81 0.0028 24.2 3.5 19 24-42 36-54 (323)
132 1fzc_C Fibrin; blood coagulati 21.3 1.5E+02 0.005 22.7 4.9 33 11-43 15-47 (319)
133 3v67_A Sensor protein CPXA; PA 21.0 73 0.0025 21.3 2.8 44 12-57 13-70 (138)
134 4ghu_A TNF receptor-associated 21.0 1.6E+02 0.0055 20.2 4.7 17 27-43 20-36 (198)
135 1txp_A HnRNP C, heterogeneous 20.8 99 0.0034 15.8 3.6 21 15-35 4-24 (28)
136 3pjs_K KCSA, voltage-gated pot 20.7 1.5E+02 0.0053 19.6 4.5 14 24-37 148-161 (166)
137 3rrk_A V-type ATPase 116 kDa s 20.6 1.7E+02 0.0057 21.5 5.0 33 11-43 223-255 (357)
138 2ocy_A RAB guanine nucleotide 20.5 1.1E+02 0.0037 21.3 3.6 37 12-48 63-99 (154)
139 3gp4_A Transcriptional regulat 20.4 98 0.0034 20.3 3.4 23 17-39 84-106 (142)
140 4etp_A Kinesin-like protein KA 20.3 75 0.0026 24.7 3.1 33 11-43 14-46 (403)
141 3eff_K Voltage-gated potassium 20.3 1.3E+02 0.0046 19.1 4.0 13 24-36 121-133 (139)
142 2ve7_A Kinetochore protein HEC 20.3 1.1E+02 0.0037 23.0 3.9 28 15-42 186-213 (315)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=84.71 E-value=1.3 Score=22.76 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 17 AALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+.|-++-..|..+++.||-+|..+|
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 3455666778899999999999887
No 2
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=78.83 E-value=5.1 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 19 LVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
|-..-..|+++++.||+.|.++|..
T Consensus 29 lendnanlekdianlekdianlerd 53 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHHHHh
Confidence 3334556888888888888888753
No 3
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=77.83 E-value=2.7 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.384 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.-...|++|+-.|..|.+++.+|..+|..
T Consensus 46 ~Al~aLkrKK~~E~qL~q~~~ql~~LE~q 74 (79)
T 4abm_A 46 AALQALKRKKRYEKQLAQIDGTLSTIEFQ 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33345788888899999998888888863
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.09 E-value=7.3 Score=25.80 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.....|...|++|+.++..|+++|-+.|..
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777888888888888888887764
No 5
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=68.90 E-value=8.1 Score=21.78 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 034467 18 ALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
+|+++=.+++.+++..|++|..+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKL 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999765
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=68.79 E-value=11 Score=19.89 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
.+..+++.|..--++|.+.+..||+.+-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678888888889999999999987643
No 7
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.76 E-value=12 Score=20.40 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+..+..+|+.++..|+.+...|..-+-..|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 456778899999999999999888776655
No 8
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=68.18 E-value=11 Score=19.64 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 17 AALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
..|-++=..|+..|..||+.+..+|.
T Consensus 4 ealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556667788888888888877763
No 9
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=67.27 E-value=11 Score=25.18 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETS-YLQD 47 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~-YL~e 47 (94)
.++...+..|+...+++++++..+..++...+.. +++.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~ 66 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMER 66 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999888743 3443
No 10
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=65.14 E-value=4.6 Score=22.57 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHH--hcccc
Q 034467 27 QDELRNIENQVYE--LETSY 44 (94)
Q Consensus 27 e~~L~~lE~qIy~--~Et~Y 44 (94)
.+.+..||+|||- .|+.|
T Consensus 7 ~d~I~aiEQqiyvA~seGd~ 26 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDV 26 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHhcCCH
Confidence 4678999999984 45444
No 11
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=65.06 E-value=14 Score=20.74 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
..+.++-.+...||+++..||.++-++..
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999876543
No 12
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=63.51 E-value=22 Score=22.22 Aligned_cols=44 Identities=7% Similarity=0.198 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceee
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFK 56 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIik 56 (94)
+..+|..|...+..+..++..++..+..++.. -+.++.+|..+.
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~l~ 58 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRELT 58 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcCC
Confidence 45677777788888888888888888877664 234666877665
No 13
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=63.48 E-value=13 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..+..+|+.++..|+.+.+.|-.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456788999999999999888754
No 14
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.10 E-value=17 Score=19.60 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
..+++-....+.=..|.++-..||.||..+|
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 4566666777777778888888999988776
No 15
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.32 E-value=21 Score=20.08 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+.|.+|-.+.+.|+...+.||..|-.++
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999887654
No 16
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=58.21 E-value=18 Score=19.47 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..++.+|+.++..|+.+++.|-.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 456788999999999999888754
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.07 E-value=20 Score=22.17 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Q 034467 13 AATLAALVSKRSR----FQDELRNIENQVYELET 42 (94)
Q Consensus 13 ~~~L~~ll~kr~~----Le~~L~~lE~qIy~~Et 42 (94)
-.+|+.++++|.+ .+..++.+|++|-.+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766543 55666666666666553
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=56.31 E-value=21 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 17 AALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
..|.....+|..+...|+.+|-.+
T Consensus 57 ~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555443
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.14 E-value=20 Score=20.60 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVY 38 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy 38 (94)
.++.++.+|-++-..|.+++..+..++-
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777777777766654
No 20
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=56.01 E-value=22 Score=19.12 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..++.+|+.++..|+.+++.|-+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888888888888887754
No 21
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=53.61 E-value=23 Score=23.78 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+.++-.-+++|+++++..|+-|..||-
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556688999999999999999885
No 22
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.35 E-value=15 Score=28.71 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et 48 (94)
+.+..+++.|.+++++|+++++.++.++-+.+..|.++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999888888887654
No 23
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.22 E-value=30 Score=21.91 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
+.++|++.-++-+.|..++..+++++.++
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999883
No 24
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=51.30 E-value=14 Score=21.40 Aligned_cols=25 Identities=4% Similarity=0.375 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
...+..|++....|.+++..++.+|
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555666666666555543
No 25
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=51.29 E-value=12 Score=24.37 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccc
Q 034467 10 SNPAATLAALVS-KRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 10 ~~~~~~L~~ll~-kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+...+.|...+. -++.|+.+++.|+++|-.+|..
T Consensus 35 s~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 35 ATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554443 4678999999999999988864
No 26
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=50.76 E-value=23 Score=20.04 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
+..+.+|..+-..|+..|..|+..|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666554
No 27
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.67 E-value=28 Score=18.70 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..+..+|+.++..|+.+.+.|-.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456777888888888888877754
No 28
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=48.98 E-value=5.5 Score=26.99 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeecCcccc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIikGfd~y~ 62 (94)
|.+..+.+.+++..+..|+. ...+.|..+. |+++++-|+.++
T Consensus 43 L~~~~~m~~~i~ek~~~i~~---~~~~~~yK~e--Y~~L~KkYk~~~ 84 (119)
T 2avr_X 43 LAQNEQVYNELSQRAQRLQA---EANTRFYKSQ--YQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HTTSCTTHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcccHHHHH--HHHHHHHHHHHH
Confidence 33333334444444444443 3444444443 455555555544
No 29
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=48.28 E-value=36 Score=21.54 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYEL---ETSYLQDI 48 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~---Et~YL~et 48 (94)
+-.+|..|-+.+..|+.+|..+|.+...+ |..|+.+.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~ey 62 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56788888899999999999888876544 55666554
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.59 E-value=30 Score=21.82 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
++++++..+...|..|+-++..|...+.++
T Consensus 60 ~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888999999888888765
No 31
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.84 E-value=37 Score=20.81 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
-+..|-.++..++..+..||.++-..+.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666655554443
No 32
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=46.77 E-value=22 Score=27.98 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
.+..+|.++.+++++|+++++.++.++...+-.+++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766666666665555555444
No 33
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=46.70 E-value=45 Score=20.68 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
+|.+|.....--++|++++...+..|-++|-.-=++
T Consensus 29 lR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 29 LRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDA 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcccc
Confidence 577777777778889999999999999998654443
No 34
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=46.18 E-value=40 Score=21.42 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+..+|.+-|++|+++|..-.++|-++|-
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566676776666666666666553
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.47 E-value=38 Score=21.07 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
..++..+...-..|..++..++.+|..++..|
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666555543
No 36
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=45.13 E-value=45 Score=20.70 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+..|-.++..|+..+..||.++-..+.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555544443
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.08 E-value=37 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+.++-+...+|.+++..|+.+|-.+|+.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666666665543
No 38
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=44.26 E-value=14 Score=21.47 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccee
Q 034467 21 SKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (94)
Q Consensus 21 ~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIi 55 (94)
++.++|+++|..+-+.|-.+|- +.+--|||.
T Consensus 14 kk~eeler~lrk~kk~iKklEd----eNPWLGNIk 44 (50)
T 1a92_A 14 KKLEELERDLRKLKKKIKKLEE----DNPWLGNIK 44 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhc----cCCchhhhh
Confidence 4556788889999888888773 344467773
No 39
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=44.12 E-value=38 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
+.++|..|..+.++|+..|..|...+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677777777778888887777653
No 40
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.04 E-value=25 Score=27.49 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccce
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNA 54 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNI 54 (94)
.+..+|+++-++|.++|+.+|+++...|....+.-...+||
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45567778888888888888888888887775433333444
No 41
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=43.63 E-value=39 Score=24.44 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+..++..|.+++.+|+..+..|+..|-.+++.
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677788888888888888888888776654
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=43.25 E-value=47 Score=20.61 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
...+..|-++...+++++..++.++|..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667777777777777654
No 43
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=42.51 E-value=27 Score=23.28 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+|++++..|+.+|..++.+|-..+..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888887555443
No 44
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=41.39 E-value=41 Score=18.02 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIE 34 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE 34 (94)
+..+..+|+.++..|+.+++.|-
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566778888888888877764
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.39 E-value=38 Score=22.82 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
-.+|-.+...-..|+.++..++++||++
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~l 94 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDL 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777777777777764
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.81 E-value=42 Score=17.89 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..+..+|+.++..|+.+.+.|..
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666777777777777776643
No 47
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=40.68 E-value=50 Score=22.54 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+..++..+-..-..++.+|..+|.+|-..|..+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 2gkw_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLETAS 37 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344555544555566778888888888888765
No 48
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=39.75 E-value=59 Score=20.95 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
.++++|..|.++=+.|++.+..+.++|-++-
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999998888887665
No 49
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.71 E-value=53 Score=20.15 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
.+..+|+++-.+-..|++++..+|.+|-+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678888888888899999988888765
No 50
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=39.40 E-value=52 Score=21.77 Aligned_cols=19 Identities=5% Similarity=0.247 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034467 19 LVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qI 37 (94)
|.+++.+|+++++.|+..+
T Consensus 100 l~~~~~~l~~~i~~L~~~~ 118 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNL 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 51
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=38.58 E-value=47 Score=17.90 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVY 38 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy 38 (94)
+...|...|.|-+.||.+=..||.+|-
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999998884
No 52
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=38.48 E-value=55 Score=20.26 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 034467 19 LVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
|..++..|+++++.|+..+-..
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l 101 (109)
T 1r8d_A 80 LQSQKEILMKKKQRMDEMIQTI 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444433
No 53
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.34 E-value=47 Score=17.78 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..+..+|+.++..|+.+...|-.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455677889999999888877753
No 54
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=38.20 E-value=63 Score=20.95 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
+.++++..+++-+.|.+.+..||.++..
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677777777776643
No 55
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.08 E-value=64 Score=19.65 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
...+..|-++...++.++..++.+||.
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666667777777766664
No 56
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.61 E-value=50 Score=21.44 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et 48 (94)
+...|..-..+|...+....+||.++-++=++.|++-
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667788888888888888888777777653
No 57
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.44 E-value=33 Score=27.69 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL 45 (94)
+..+|+++-++|.++|..||.++...|...-
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777777777766654
No 58
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.87 E-value=29 Score=27.54 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+|+++-++|.++|+.||+++...|...
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 59
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=36.79 E-value=49 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+|..+=++|.+.|..||.+=||+|...
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344455679999999999999998764
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.45 E-value=69 Score=19.27 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
..+|++.-.+..+++.++..|...|-..|.
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~ 55 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555443
No 61
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=36.17 E-value=45 Score=20.25 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et 48 (94)
.+|++.+..|.+|..++--+++++.-+-..-+++.
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~ 37 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQRELLTDH 37 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 57999999999999999999988766555555544
No 62
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.73 E-value=65 Score=21.20 Aligned_cols=24 Identities=13% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
++.++..+|+..+..|+..|-.+|
T Consensus 92 ~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 92 ELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433
No 63
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=35.64 E-value=72 Score=21.08 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+...|.++...|+..+..|+..|..++.
T Consensus 88 q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 88 QREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555555555555555554433
No 64
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.54 E-value=54 Score=21.47 Aligned_cols=31 Identities=6% Similarity=0.289 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
.-..+..|++++..|+..|..++..+.+.|-
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888777654
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=35.10 E-value=52 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034467 15 TLAALVSKRSRFQDELRNIENQ 36 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~q 36 (94)
....|+++|..|+..|..|+..
T Consensus 64 ~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 64 KVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544
No 66
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=34.89 E-value=28 Score=21.35 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 034467 24 SRFQDELRNIENQVYELETS 43 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~Et~ 43 (94)
.-|+..|..|+.+|+..+++
T Consensus 49 ~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 49 RTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 35888999999999988754
No 67
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=34.71 E-value=33 Score=19.52 Aligned_cols=18 Identities=6% Similarity=0.307 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 034467 24 SRFQDELRNIENQVYELE 41 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~E 41 (94)
..|+.+|+.||..|-.++
T Consensus 52 ~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 52 EAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456667777777665544
No 68
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.58 E-value=69 Score=18.60 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
..+..+|-.....|..++..|+.+|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544
No 69
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.54 E-value=53 Score=25.74 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.++.++.++.++-+++..+++.++++++..|..
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 46 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNME 46 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999999988765
No 70
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.53 E-value=33 Score=21.98 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccccccccccccce
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQV---YELETSYLQDIGQFGNA 54 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qI---y~~Et~YL~et~~~GNI 54 (94)
+.+..+.|.+|-..|+.+|.+-.++. ..+=..|-++.. +||.
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~-~GD~ 57 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQ-MGDP 57 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGG-GCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cCCH
Confidence 33444444444444444444333331 122234555443 6553
No 71
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=34.42 E-value=48 Score=21.65 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 19 LVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
|..+=++|.+.|..||.+=||+|...
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv 72 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQI 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444578888999999999988764
No 72
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=34.32 E-value=75 Score=18.94 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
...-|.+++..|+++++.|+..+...+
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666555544
No 73
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=33.85 E-value=60 Score=21.20 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIENQ 36 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE~q 36 (94)
+.+..+|+.|..+...|+.+|..|+..
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELTNKL 45 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355667777777777777777777764
No 74
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.84 E-value=34 Score=27.71 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 19 LVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
|+++-++|.++|..||.++...|...
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444443
No 75
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.49 E-value=69 Score=19.55 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVY 38 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy 38 (94)
.++|..|-.+=.+|+.++..|+.+|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444443
No 76
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=33.45 E-value=54 Score=22.18 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
|.+|-.++..|+..++.+|.+|-++|.
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 567788889999999999999998875
No 77
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=32.68 E-value=78 Score=19.55 Aligned_cols=17 Identities=0% Similarity=0.182 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034467 21 SKRSRFQDELRNIENQV 37 (94)
Q Consensus 21 ~kr~~Le~~L~~lE~qI 37 (94)
+++..|+++++.|+..+
T Consensus 81 ~~~~~l~~~i~~l~~~~ 97 (108)
T 2vz4_A 81 RQHELLSARIGKLQKMA 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 78
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=32.60 E-value=23 Score=18.50 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 19 LVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
|-++-..|+..-+..|+.|..+|.
T Consensus 5 leqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 5 LEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666766653
No 79
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.47 E-value=68 Score=23.64 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQ---VYELE 41 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~q---Iy~~E 41 (94)
+-.++.++.+++.+|+.++..|+.+ |-.++
T Consensus 104 l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 104 VASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4556777777888888888888887 66554
No 80
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.43 E-value=69 Score=19.92 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 9 NSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 9 ~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
-..+..+|+++-.+-..|++++..+|.++-+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3456678888888888899999999888764
No 81
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=32.08 E-value=22 Score=21.10 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHH-Hhcccccccc
Q 034467 24 SRFQDELRNIENQVY-ELETSYLQDI 48 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy-~~Et~YL~et 48 (94)
..|+.+|..||++.. +-=++||++-
T Consensus 23 dEL~aELe~LeqE~~~~~~~syL~~~ 48 (57)
T 2lxm_B 23 DDLEAELDALGDELLADEDSSYLDEA 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHh
Confidence 478999999998874 3336799863
No 82
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=31.93 E-value=41 Score=16.99 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 034467 25 RFQDELRNIENQVYELETS 43 (94)
Q Consensus 25 ~Le~~L~~lE~qIy~~Et~ 43 (94)
+|+.....||+++-.+|++
T Consensus 5 kldanvkrlekevgklege 23 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhhh
Confidence 4666667777777666654
No 83
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=31.81 E-value=82 Score=21.12 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
++..-.-+++|+.+++..|+-|.+||--
T Consensus 77 ~KkYk~~~~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 77 ASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445778999999999999999875
No 84
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.55 E-value=86 Score=19.75 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
..+++++-.+..+++.++..|...|-..|.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666655544
No 85
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=31.41 E-value=49 Score=21.18 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeecCc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFE 59 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIikGfd 59 (94)
..+++|...++.|.+++..++++|..+-+. ....|++++=.|
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L~~~----P~~Vg~v~e~~d 48 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLRSP----PLLVGVVSDILE 48 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHSC----CEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CceEEEEEEEec
Confidence 345677888888888888888888876542 123777777765
No 86
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=31.34 E-value=36 Score=19.71 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 034467 24 SRFQDELRNIENQVYELETS 43 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~Et~ 43 (94)
.-|+..|..|+.+|+..+++
T Consensus 31 ~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 31 RTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 35888899999999887753
No 87
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.96 E-value=33 Score=27.73 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhcccccc
Q 034467 20 VSK-RSRFQDELRNIENQVYELETSYLQ 46 (94)
Q Consensus 20 l~k-r~~Le~~L~~lE~qIy~~Et~YL~ 46 (94)
+++ .++|.++|..||.++...|...-+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 667777777777777777766543
No 88
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.89 E-value=56 Score=20.71 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 034467 20 VSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 20 l~kr~~Le~~L~~lE~qIy~~Et 42 (94)
.++-..|+.+..+|+++|...+.
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544443
No 89
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Probab=30.57 E-value=52 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 9 NSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 9 ~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
-..+...|++||.+=..|.+.+..|+..||.
T Consensus 115 ~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~ 145 (169)
T 3ctw_B 115 VEELPFGLMNLLQRSERLYERVRHLDRRMYV 145 (169)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999999999999999995
No 90
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=29.71 E-value=95 Score=18.70 Aligned_cols=30 Identities=7% Similarity=0.306 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 17 AALVSKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
.++++++++-++.|..+=..|.++=.. +++
T Consensus 21 eevme~hk~adermK~~w~~Ii~KY~~-~ed 50 (63)
T 2yfv_C 21 EEVMERHKKADENMKRVWSQIIQKYES-IDN 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC
Confidence 467889999999999999999887666 444
No 91
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.63 E-value=68 Score=17.03 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIE 34 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE 34 (94)
+..+..+|+.++..|+.+...|-
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 45667788888888888877764
No 92
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=29.31 E-value=61 Score=21.25 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 8 GNSNPAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 8 ~~~~~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..+.++.|..|..+-.+|+.+|..|+.
T Consensus 25 ~~~~~~~~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 25 DVASLRQQVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566688877777888888887776
No 93
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.93 E-value=74 Score=17.20 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
+..+..+|+.++..|+.+.+.|-.-+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45566788888888888877775543
No 94
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.54 E-value=83 Score=19.41 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
++++++..+...+..|+-++..+...+-++=..|=++
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888889999999999888888876666444
No 95
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.35 E-value=74 Score=17.00 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~ 35 (94)
+..+..+|+.++..|+.+.+.|-.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456677888999988888877754
No 96
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=28.20 E-value=50 Score=17.25 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 034467 25 RFQDELRNIENQVYELET 42 (94)
Q Consensus 25 ~Le~~L~~lE~qIy~~Et 42 (94)
+|+++.++-|.+-|.+|.
T Consensus 5 qlekevaqaeaenyqleq 22 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQ 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 344444444444444443
No 97
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=28.16 E-value=76 Score=21.78 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
+|.+.|.-|..|.+++..|+..|...
T Consensus 5 KLAEAL~lRadl~kri~qL~~ri~~n 30 (154)
T 3kdq_A 5 YLAEALAQRVEAQRRYSELNQLLLDV 30 (154)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999876
No 98
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=28.06 E-value=90 Score=23.63 Aligned_cols=33 Identities=15% Similarity=0.414 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.+...+...-++-+++|+.++.|-..||..|-+
T Consensus 220 ~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~ 252 (268)
T 2yo3_A 220 EMNSKIKGVENKMKQIEDKIEEILSKIYHIENE 252 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888999999999999988764
No 99
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.97 E-value=82 Score=23.95 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.++..+-++|-++||.++..|+.+|-+.+..
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566677777777777777766543
No 100
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.62 E-value=83 Score=20.45 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 17 AALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
.+|+++|++|+.-|+.|+.+-...
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R 44 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAER 44 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999888764433
No 101
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.51 E-value=1.1e+02 Score=19.89 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
++.++..|-.-+..|.++++.||-+|-.
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666643
No 102
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.17 E-value=63 Score=18.34 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034467 24 SRFQDELRNIENQVYEL 40 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~ 40 (94)
.+|++++..||..++.-
T Consensus 15 ~KLek~ID~LEdeL~~e 31 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQ 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555556665555543
No 103
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=26.37 E-value=1.2e+02 Score=20.44 Aligned_cols=33 Identities=6% Similarity=0.119 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 9 ~~~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
++...+....+.+.+++++.+++.||.-+-+.+
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 195 (203)
T 3qks_A 163 LDKFETAYKKLSELKKTINNRIKEYRDILARTE 195 (203)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455555666666667777777766555444
No 104
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.02 E-value=1.2e+02 Score=18.83 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
..+++++-.+..+++.++..|...|-..|..
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666555443
No 105
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=25.68 E-value=54 Score=19.52 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 034467 24 SRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~Et~Y 44 (94)
.-|+..|..|+.+|+..+..+
T Consensus 38 ~~Le~NLrEL~~ei~~~~~~~ 58 (59)
T 1z0j_B 38 EVLTENLRELKHTLAKQKGGT 58 (59)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 357888999999998887643
No 106
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.56 E-value=78 Score=20.25 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
..++..+...+..|...+..+++-+-..+.
T Consensus 14 ~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 14 QSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666554
No 107
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=25.50 E-value=81 Score=20.93 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 034467 20 VSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 20 l~kr~~Le~~L~~lE~qIy~~Et 42 (94)
-.-+++|...|..||.+|-++|-
T Consensus 66 ~~~~~EL~~~l~sie~dLeDLe~ 88 (130)
T 4dnd_A 66 DWTTNELRNGLRSIEWDLEDLEE 88 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666553
No 108
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.49 E-value=1.1e+02 Score=18.28 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
.++..+|++-...|.++|.-++..|-.+-
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 46778899999999999999999887654
No 109
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=25.27 E-value=1e+02 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 14 ATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
..|+.|-++=..+-..|+.||.+|
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555566666666654
No 110
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.94 E-value=1.1e+02 Score=22.77 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+-.++..|-.+|+.+.+.|+.||+.=..+|-..
T Consensus 182 ID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 182 IEVEVENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456788899999999999999999877777655
No 111
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=24.85 E-value=20 Score=22.08 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=12.8
Q ss_pred ccccccccccceeecCcccc
Q 034467 43 SYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 43 ~YL~et~~~GNIikGfd~y~ 62 (94)
.||-+--..--.|+|||+|.
T Consensus 30 v~L~NG~~l~G~I~~fD~ft 49 (71)
T 2qtx_A 30 IFLRNGEVLDAEVTGVSNYE 49 (71)
T ss_dssp EEETTSCEEEEEEEEECSSE
T ss_pred EEEeCCeEEEEEEEEEcceE
Confidence 45554333445788999995
No 112
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=24.60 E-value=1e+02 Score=20.92 Aligned_cols=27 Identities=11% Similarity=0.373 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+|..+=++|.+.|..||.+=||+|...
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kv 88 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKV 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344455689999999999999998764
No 113
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.59 E-value=1.1e+02 Score=20.05 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+..++.++.++..+|+..+..|+..|..+|.
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777766665
No 114
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=24.50 E-value=1.2e+02 Score=21.03 Aligned_cols=22 Identities=9% Similarity=-0.118 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034467 16 LAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qI 37 (94)
+.++.++.++|...+..|+..+
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 88 ERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 115
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.43 E-value=1.2e+02 Score=18.88 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
++...|...|.|-+.||.+=..||.+|-.+-
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677899999999999999999999986553
No 116
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=23.92 E-value=1.2e+02 Score=20.17 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~ 49 (94)
-+.|+++-+.-..+.++|..++++|-..|--+|..--
T Consensus 10 lK~L~~veksv~~~~kkl~~~~~el~~iekGFL~kel 46 (114)
T 1hx1_B 10 LKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDL 46 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHh
Confidence 3567777777788899999999999999999998653
No 117
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=23.82 E-value=30 Score=21.60 Aligned_cols=12 Identities=58% Similarity=0.974 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcc
Q 034467 31 RNIENQVYELET 42 (94)
Q Consensus 31 ~~lE~qIy~~Et 42 (94)
..||.|||.+|-
T Consensus 23 KTLERqvYEL~k 34 (78)
T 2lhr_A 23 KTLERQVYELEK 34 (78)
T ss_dssp CSHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 468899998874
No 118
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=23.66 E-value=9.7 Score=22.94 Aligned_cols=8 Identities=13% Similarity=0.596 Sum_probs=6.5
Q ss_pred ceeecCcc
Q 034467 53 NAFKGFEG 60 (94)
Q Consensus 53 NIikGfd~ 60 (94)
||+||||.
T Consensus 44 niVrgYd~ 51 (60)
T 1nei_A 44 NTVRSYDT 51 (60)
T ss_dssp HHHHHTTS
T ss_pred HHHhcccc
Confidence 88888874
No 119
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation, xanthine, inhibition aspergillus flavus, peroxisome, purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A* 1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A* 1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A 2ic0_A* ...
Probab=23.63 E-value=39 Score=25.90 Aligned_cols=7 Identities=57% Similarity=0.572 Sum_probs=5.9
Q ss_pred CCccccC
Q 034467 80 EDRIFSL 86 (94)
Q Consensus 80 ~DRiFS~ 86 (94)
.|||||-
T Consensus 175 ~DRilsT 181 (296)
T 3l8w_A 175 WDRILST 181 (296)
T ss_dssp SSCCEEE
T ss_pred cccceEE
Confidence 6999985
No 120
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.31 E-value=1.1e+02 Score=17.38 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+..+...|-.....|..++..|+.++..+.
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666665543
No 121
>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A {Arthrobacter globiformis} SCOP: d.96.1.4 d.96.1.4 PDB: 2yzb_A* 2yzd_A* 2yze_A 1vax_A 1vay_A*
Probab=22.93 E-value=40 Score=25.94 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=12.8
Q ss_pred cCcccccCCCCCCCCCCCCCCCC-CCccccC
Q 034467 57 GFEGFLSSGKNTSNFKRPRKLQP-EDRIFSL 86 (94)
Q Consensus 57 Gfd~y~k~~~~~~~~kr~~~~~d-~DRiFS~ 86 (94)
||.||++-.= ..+.| .|||||-
T Consensus 162 ~F~GFirDeY--------TTLpEt~DRilaT 184 (302)
T 2yzc_A 162 EFHGFPRDKY--------TTLQETTDRILAT 184 (302)
T ss_dssp CBCCCCCCTT--------CCCCCBSCCCEEE
T ss_pred cccccccCCc--------ccCCCcccceeEE
Confidence 6777776421 12222 6999985
No 122
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=22.88 E-value=22 Score=22.43 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=13.7
Q ss_pred cccccccccccceeecCcccc
Q 034467 42 TSYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 42 t~YL~et~~~GNIikGfd~y~ 62 (94)
+.||-+--..=-+|+|||+|.
T Consensus 23 tv~L~NG~~l~G~I~~fD~ft 43 (82)
T 1u1s_A 23 SIYLVNGIKLQGQIESFDQFV 43 (82)
T ss_dssp EEEETTSCEEEEEEEEECSSE
T ss_pred EEEEeCCcEEEEEEEEEcceE
Confidence 356654434445788999995
No 123
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=22.43 E-value=64 Score=19.74 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHh-ccccccccc
Q 034467 24 SRFQDELRNIENQVYEL-ETSYLQDIG 49 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~-Et~YL~et~ 49 (94)
..|+.+|..|+.++... =.+||.+..
T Consensus 11 ~eL~aELdaL~~e~~~~~~pSyL~~~~ 37 (69)
T 3uly_B 11 DDLEAELDALGDELLADEDSSYLDEAA 37 (69)
T ss_pred HHHHHHHHHHHHHHhcccCcchhhccc
Confidence 36888999999887522 257998753
No 124
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=22.43 E-value=23 Score=22.09 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=13.9
Q ss_pred cccccccccccceeecCcccc
Q 034467 42 TSYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 42 t~YL~et~~~GNIikGfd~y~ 62 (94)
+-||-+--..=-+|+|||+|.
T Consensus 27 tv~L~nG~~l~G~I~~fD~f~ 47 (78)
T 3ahu_A 27 TVFLLNGFQLRGQVKGFDNFT 47 (78)
T ss_dssp EEEETTSCEEEEEEEEECSSE
T ss_pred EEEEeCCeEEEEEEEEEcceE
Confidence 356664434445788999995
No 125
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.23 E-value=1.5e+02 Score=18.44 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
|.-|.+.++--++|..++..++.+|-.+.
T Consensus 26 R~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889998888888886543
No 126
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=22.17 E-value=1e+02 Score=23.49 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
...|+.|....++|+++|..||..|-.....
T Consensus 27 ~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 27 AGSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777777788887777665443
No 127
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.01 E-value=1.2e+02 Score=17.35 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
.+..+...|-.....|..++..|+.++..+.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666655543
No 128
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.85 E-value=1.2e+02 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
+++++|..+...|..|+-++..+...+-++=..|
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777777777766655444
No 129
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=21.64 E-value=1.6e+02 Score=21.08 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccccccc
Q 034467 10 SNPAATLAALVSKRSRFQDELRNIE----NQVYELETSYLQDI 48 (94)
Q Consensus 10 ~~~~~~L~~ll~kr~~Le~~L~~lE----~qIy~~Et~YL~et 48 (94)
.+...+++..|..=+.++.++..|| ++|+++|..|..-.
T Consensus 22 ~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~ 64 (225)
T 2e50_A 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLR 64 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666777777666 56788888887643
No 130
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.54 E-value=1.7e+02 Score=19.20 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.+.++|..|...+..|...|..||+.=-++|..
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 467788888888888888888888887666654
No 131
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.39 E-value=81 Score=24.17 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 034467 24 SRFQDELRNIENQVYELET 42 (94)
Q Consensus 24 ~~Le~~L~~lE~qIy~~Et 42 (94)
+.++..|..|+.+|-.++.
T Consensus 36 ~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 36 RVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554
No 132
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.27 E-value=1.5e+02 Score=22.66 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
++..++..|...=+.++.+|..|+.+|..+|..
T Consensus 15 ~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 15 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777666677888888898888888764
No 133
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=21.02 E-value=73 Score=21.30 Aligned_cols=44 Identities=16% Similarity=0.431 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcc-----------ccccccccccceeec
Q 034467 12 PAATLAALVSKRSRFQDEL---RNIENQVYELET-----------SYLQDIGQFGNAFKG 57 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L---~~lE~qIy~~Et-----------~YL~et~~~GNIikG 57 (94)
+..+++.|+.-.+.+++++ ..|++.++..|. -||-+. -|+||-.
T Consensus 13 p~~~~~~l~~~~~~ie~~~~~~~~l~r~l~~l~~~~~~~~d~~~r~~l~d~--eG~Il~~ 70 (138)
T 3v67_A 13 PDEHYQRIIETRDAIQNKYSKETDLGRILFRVEGNRAGKHDPRPRVFFSDY--NGNVLTT 70 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHTCCCTTCCSCEEEEECT--TSCEECC
T ss_pred CHHHHHHHHHHHHHHHHHhccCccHHHHHHHhcccccccCCCCccEEEEcC--CCCEecC
Confidence 4567888888888888887 456777777764 355443 4788754
No 134
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.99 E-value=1.6e+02 Score=20.20 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhccc
Q 034467 27 QDELRNIENQVYELETS 43 (94)
Q Consensus 27 e~~L~~lE~qIy~~Et~ 43 (94)
+.+|..||+++-.+|..
T Consensus 20 ~~~~~~l~~~~~~~~~~ 36 (198)
T 4ghu_A 20 DIRLADMDLRFQVLETA 36 (198)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 34778888888888753
No 135
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=20.78 E-value=99 Score=15.80 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034467 15 TLAALVSKRSRFQDELRNIEN 35 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~ 35 (94)
..++|.+-|.+++.=|..||+
T Consensus 4 IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 4 IKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777777764
No 136
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=20.71 E-value=1.5e+02 Score=19.57 Aligned_cols=14 Identities=7% Similarity=0.358 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 034467 24 SRFQDELRNIENQV 37 (94)
Q Consensus 24 ~~Le~~L~~lE~qI 37 (94)
++|.++++.||+++
T Consensus 148 ~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 148 RALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666554
No 137
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.58 E-value=1.7e+02 Score=21.46 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.+...+.++-.+.+.|+..|..++.+|...-..
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777766655433
No 138
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.47 E-value=1.1e+02 Score=21.27 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et 48 (94)
+...|.+-.++|...+....+||.++-++=++.|++-
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA 99 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 99 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667778888888888888888877777654
No 139
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.41 E-value=98 Score=20.30 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034467 17 AALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 17 ~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
.-|.+++..|+++++.|+..+-.
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~ 106 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDR 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554433
No 140
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.34 E-value=75 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
.+.+++.+|.+.-++++.++..+++++...|..
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETV 46 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777778888888888777766653
No 141
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.29 E-value=1.3e+02 Score=19.09 Aligned_cols=13 Identities=8% Similarity=0.340 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 034467 24 SRFQDELRNIENQ 36 (94)
Q Consensus 24 ~~Le~~L~~lE~q 36 (94)
+++.++++.+|++
T Consensus 121 ~~l~~~l~~le~~ 133 (139)
T 3eff_K 121 RALHERFDRLERM 133 (139)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 142
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.27 E-value=1.1e+02 Score=22.95 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
++..|.+..+.|+++++.||+++-....
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555666666666666666666555444
Done!