Query 034467
Match_columns 94
No_of_seqs 100 out of 168
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 04:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034467.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034467hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 57.7 4.1 0.0003 24.9 3.0 31 15-45 2-32 (133)
2 d1r8da_ a.6.1.3 (A:) Multidrug 52.5 7.5 0.00055 22.8 3.6 27 13-39 81-107 (109)
3 d1seta1 a.2.7.1 (A:1-110) Sery 49.0 12 0.00089 22.1 4.2 41 15-55 65-105 (110)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 46.9 20 0.0015 20.3 4.9 28 13-40 58-85 (88)
5 d1j2ga2 d.96.1.4 (A:159-312) U 44.1 5.5 0.0004 26.2 2.0 22 57-86 25-47 (154)
6 d2azeb1 e.63.1.2 (B:201-301) T 42.5 24 0.0017 21.2 4.8 31 11-41 5-35 (101)
7 d2yzca2 d.96.1.4 (A:142-297) U 37.7 7.8 0.00057 25.6 2.0 22 57-86 21-43 (156)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 37.3 30 0.0022 20.6 4.8 28 14-41 95-122 (133)
9 d2ibaa2 d.96.1.4 (A:137-295) U 36.8 8.4 0.00061 25.4 2.0 22 57-86 22-44 (159)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 36.5 32 0.0023 20.1 4.7 32 13-44 64-95 (107)
11 d1seta1 a.2.7.1 (A:1-110) Sery 34.8 38 0.0028 19.7 4.8 30 11-40 68-97 (110)
12 d1lrza1 a.2.7.4 (A:245-309) Me 34.3 35 0.0025 19.0 4.3 22 16-37 5-26 (65)
13 d1nkpb_ a.38.1.1 (B:) Max prot 28.7 45 0.0033 18.4 4.5 21 18-38 58-78 (83)
14 d1ivsa1 a.2.7.3 (A:797-862) Va 28.1 42 0.0031 17.9 4.6 25 13-37 3-27 (66)
15 d1fxka_ a.2.5.1 (A:) Prefoldin 27.2 55 0.004 18.9 4.7 31 12-42 13-43 (107)
16 d1lvfa_ a.47.2.1 (A:) Syntaxin 26.8 37 0.0027 20.0 3.8 25 19-43 40-64 (106)
17 d1eema1 a.45.1.1 (A:103-241) C 26.7 46 0.0033 19.1 4.2 27 21-47 39-65 (139)
18 d2dlka1 g.37.1.1 (A:8-37) Zinc 24.7 12 0.00087 18.1 0.8 11 76-86 4-14 (30)
19 d1u1sa1 b.38.1.2 (A:6-71) Plei 23.7 10 0.00073 21.7 0.5 21 42-62 18-38 (66)
20 d1q08a_ a.6.1.3 (A:) Transcrip 21.1 38 0.0028 19.4 2.9 14 22-35 47-60 (94)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=57.65 E-value=4.1 Score=24.88 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELETSYL 45 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL 45 (94)
.|.+|......|+.+|..|+.+|...+..--
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~ 32 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777766665443
No 2
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=52.49 E-value=7.5 Score=22.81 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~ 39 (94)
......+.++++.|++.++.|++.|-.
T Consensus 81 ~~~~~~l~~~~~~l~~~~~~l~~~l~~ 107 (109)
T d1r8da_ 81 QSQKEILMKKKQRMDEMIQTIDRTLLS 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666666777777777766643
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=48.98 E-value=12 Score=22.08 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccee
Q 034467 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (94)
Q Consensus 15 ~L~~ll~kr~~Le~~L~~lE~qIy~~Et~YL~et~~~GNIi 55 (94)
.-.+++++=+.|..++..||.+.-..|..+-+--...+||+
T Consensus 65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~ 105 (110)
T d1seta1 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34566677777888888888888877777766555566664
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.94 E-value=20 Score=20.27 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
.+++..+...+..|..+...|.++|-.+
T Consensus 58 ~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 58 QAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555443
No 5
>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]}
Probab=44.05 E-value=5.5 Score=26.20 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=13.9
Q ss_pred cCcccccCCCCCCCCCCCCCCCC-CCccccC
Q 034467 57 GFEGFLSSGKNTSNFKRPRKLQP-EDRIFSL 86 (94)
Q Consensus 57 Gfd~y~k~~~~~~~~kr~~~~~d-~DRiFS~ 86 (94)
||.||++-.= ..+.| .|||||-
T Consensus 25 ~F~GFvrDeY--------TTLpet~DRilaT 47 (154)
T d1j2ga2 25 SFVGFIRDEY--------TTLPEDSNRPLFV 47 (154)
T ss_dssp CBCSCCCSTT--------CCCCCBSSCCEEE
T ss_pred cccccccCcc--------ccCCCcccceEEE
Confidence 7888887531 22222 6999984
No 6
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.53 E-value=24 Score=21.19 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
.++++|..|.++-+.|++.+..+.++|-++-
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999998888888876653
No 7
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]}
Probab=37.65 E-value=7.8 Score=25.59 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=13.9
Q ss_pred cCcccccCCCCCCCCCCCCCCC-CCCccccC
Q 034467 57 GFEGFLSSGKNTSNFKRPRKLQ-PEDRIFSL 86 (94)
Q Consensus 57 Gfd~y~k~~~~~~~~kr~~~~~-d~DRiFS~ 86 (94)
||.||++-.- ..+. -.|||||-
T Consensus 21 ~F~GF~rDey--------TTLpet~DRilaT 43 (156)
T d2yzca2 21 EFHGFPRDKY--------TTLQETTDRILAT 43 (156)
T ss_dssp CBCCCCCCTT--------CCCCCBSCCCEEE
T ss_pred cccccccCcc--------ccCCCcccceEEE
Confidence 7888887532 1222 26999985
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=37.30 E-value=30 Score=20.56 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034467 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (94)
Q Consensus 14 ~~L~~ll~kr~~Le~~L~~lE~qIy~~E 41 (94)
+.+..+-+..+.|..++..++.+|..++
T Consensus 95 ~ri~~l~~~~~~l~~~~~~~~~~i~~l~ 122 (133)
T d1fxkc_ 95 SQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 9
>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]}
Probab=36.79 E-value=8.4 Score=25.45 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=13.7
Q ss_pred cCcccccCCCCCCCCCCCCCCC-CCCccccC
Q 034467 57 GFEGFLSSGKNTSNFKRPRKLQ-PEDRIFSL 86 (94)
Q Consensus 57 Gfd~y~k~~~~~~~~kr~~~~~-d~DRiFS~ 86 (94)
||.||++-.= ..+. -.|||||-
T Consensus 22 ~F~GF~rDeY--------TTLpet~DRilaT 44 (159)
T d2ibaa2 22 QFWGFLRDEY--------TTLKETWDRILST 44 (159)
T ss_dssp CBCSCCCSTT--------CCCCCBSSCCEEE
T ss_pred cccccccCcc--------ccCCCcccceEEE
Confidence 7888887532 1222 26999985
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.51 E-value=32 Score=20.07 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034467 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et~Y 44 (94)
..-+..|-.+...|+..+..|++++-.++..+
T Consensus 64 ~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l 95 (107)
T d1fxka_ 64 DELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777888888888877776654
No 11
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=34.77 E-value=38 Score=19.68 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034467 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (94)
Q Consensus 11 ~~~~~L~~ll~kr~~Le~~L~~lE~qIy~~ 40 (94)
.+.++.+.|=.+=+.|+.++..+|.+++++
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778888888888888888764
No 12
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=34.27 E-value=35 Score=18.97 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034467 16 LAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 16 L~~ll~kr~~Le~~L~~lE~qI 37 (94)
|..|-.++..|+.+|..++..|
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~l 26 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDI 26 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444
No 13
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.71 E-value=45 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034467 18 ALVSKRSRFQDELRNIENQVY 38 (94)
Q Consensus 18 ~ll~kr~~Le~~L~~lE~qIy 38 (94)
.+......|..+...|+.+|-
T Consensus 58 ~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 58 THQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443
No 14
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=28.12 E-value=42 Score=17.92 Aligned_cols=25 Identities=0% Similarity=-0.117 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034467 13 AATLAALVSKRSRFQDELRNIENQV 37 (94)
Q Consensus 13 ~~~L~~ll~kr~~Le~~L~~lE~qI 37 (94)
.+++.-|-++...++.++..++..+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555444443
No 15
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.23 E-value=55 Score=18.94 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034467 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (94)
Q Consensus 12 ~~~~L~~ll~kr~~Le~~L~~lE~qIy~~Et 42 (94)
+..+|..+..++.+|+.++...+.-+-.++.
T Consensus 13 lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 13 LQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666777777777777766666655553
No 16
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.81 E-value=37 Score=19.99 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 034467 19 LVSKRSRFQDELRNIENQVYELETS 43 (94)
Q Consensus 19 ll~kr~~Le~~L~~lE~qIy~~Et~ 43 (94)
+..-+++|...|..||.+|-++|.+
T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~a 64 (106)
T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDET 64 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3345677888888888888877754
No 17
>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.72 E-value=46 Score=19.13 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q 034467 21 SKRSRFQDELRNIENQVYELETSYLQD 47 (94)
Q Consensus 21 ~kr~~Le~~L~~lE~qIy~~Et~YL~e 47 (94)
+..+++.+.|..+|+.+-+.++.|+-.
T Consensus 39 ~~~~~~~~~l~~le~~L~~~~~~f~~G 65 (139)
T d1eema1 39 GLKEEFRKEFTKLEEVLTNKKTTFFGG 65 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSBTTB
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEee
Confidence 456788899999999998888889853
No 18
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.70 E-value=12 Score=18.15 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=8.4
Q ss_pred CCCCCCccccC
Q 034467 76 KLQPEDRIFSL 86 (94)
Q Consensus 76 ~~~d~DRiFS~ 86 (94)
.|...++|||.
T Consensus 4 df~gc~kifsn 14 (30)
T d2dlka1 4 DFPGCGRIFSN 14 (30)
T ss_dssp SSTTTCCEESS
T ss_pred CCCCchhhhcc
Confidence 36778999985
No 19
>d1u1sa1 b.38.1.2 (A:6-71) Pleiotropic translational regulator Hfq {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.70 E-value=10 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=13.9
Q ss_pred cccccccccccceeecCcccc
Q 034467 42 TSYLQDIGQFGNAFKGFEGFL 62 (94)
Q Consensus 42 t~YL~et~~~GNIikGfd~y~ 62 (94)
|-||-.--..--+|+|||+|.
T Consensus 18 tifL~nGvkl~G~I~~fD~ft 38 (66)
T d1u1sa1 18 SIYLVNGIKLQGQIESFDQFV 38 (66)
T ss_dssp EEEETTSCEEEEEEEEECSSE
T ss_pred EEEEEcCcEEEEEEEEEcceE
Confidence 445554444456789999995
No 20
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=21.09 E-value=38 Score=19.36 Aligned_cols=14 Identities=0% Similarity=0.275 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 034467 22 KRSRFQDELRNIEN 35 (94)
Q Consensus 22 kr~~Le~~L~~lE~ 35 (94)
|..+|+.+++.|+.
T Consensus 47 kl~~i~~kI~~L~~ 60 (94)
T d1q08a_ 47 RLQEVEARIAELQS 60 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
Done!