Query 034469
Match_columns 94
No_of_seqs 105 out of 281
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3048 Molecular chaperone Pr 100.0 1.6E-37 3.4E-42 217.4 11.0 93 1-93 1-94 (153)
2 PRK01203 prefoldin subunit alp 99.9 2.4E-26 5.2E-31 159.0 10.8 79 15-94 3-81 (130)
3 PRK14011 prefoldin subunit alp 99.9 4E-26 8.6E-31 160.1 10.9 78 14-94 5-82 (144)
4 COG1730 GIM5 Predicted prefold 99.9 2.3E-24 5E-29 151.4 10.7 85 10-94 4-88 (145)
5 TIGR00293 prefoldin, archaeal 99.9 1.4E-22 3.1E-27 136.9 10.6 80 14-94 1-80 (126)
6 PRK03947 prefoldin subunit alp 99.9 2.3E-21 5E-26 133.3 11.3 82 13-94 7-88 (140)
7 cd00584 Prefoldin_alpha Prefol 99.9 5E-21 1.1E-25 129.7 10.6 81 14-94 1-81 (129)
8 cd00890 Prefoldin Prefoldin is 99.8 8.3E-19 1.8E-23 117.5 10.7 81 14-94 1-81 (129)
9 PF02996 Prefoldin: Prefoldin 99.8 8E-19 1.7E-23 116.8 5.8 71 24-94 1-71 (120)
10 KOG3130 Uncharacterized conser 97.6 9.4E-05 2E-09 60.0 5.3 56 38-94 22-77 (514)
11 cd00890 Prefoldin Prefoldin is 97.2 0.00052 1.1E-08 45.5 4.1 68 14-81 8-88 (129)
12 cd00584 Prefoldin_alpha Prefol 96.7 0.0043 9.3E-08 41.7 4.8 68 14-81 8-88 (129)
13 COG1730 GIM5 Predicted prefold 96.0 0.044 9.5E-07 38.7 7.1 64 14-77 15-91 (145)
14 TIGR00293 prefoldin, archaeal 95.4 0.044 9.6E-07 36.6 4.9 66 14-79 8-85 (126)
15 TIGR02338 gimC_beta prefoldin, 94.7 0.11 2.3E-06 34.4 5.3 58 14-75 5-62 (110)
16 PRK03947 prefoldin subunit alp 94.5 0.33 7.1E-06 33.0 7.5 66 14-79 15-93 (140)
17 KOG3313 Molecular chaperone Pr 94.5 0.72 1.6E-05 33.9 9.6 76 17-92 39-120 (187)
18 PRK14011 prefoldin subunit alp 93.9 0.19 4.2E-06 35.3 5.5 66 14-79 12-87 (144)
19 PRK01203 prefoldin subunit alp 93.4 0.25 5.5E-06 34.3 5.3 66 14-79 9-86 (130)
20 PF01920 Prefoldin_2: Prefoldi 93.3 1.3 2.9E-05 28.0 8.5 58 15-76 1-58 (106)
21 cd00632 Prefoldin_beta Prefold 92.9 0.29 6.3E-06 32.0 4.8 57 15-75 2-58 (105)
22 PF06698 DUF1192: Protein of u 91.8 1.1 2.3E-05 27.3 5.9 31 7-37 16-46 (59)
23 PF02996 Prefoldin: Prefoldin 89.9 1.9 4E-05 28.1 6.2 59 22-80 6-77 (120)
24 PRK09343 prefoldin subunit bet 86.8 2.5 5.4E-05 28.5 5.4 53 15-70 10-62 (121)
25 KOG4098 Molecular chaperone Pr 86.2 5.4 0.00012 28.1 6.9 58 1-58 1-61 (140)
26 COG1382 GimC Prefoldin, chaper 85.6 1.7 3.8E-05 29.8 4.2 53 11-64 3-55 (119)
27 KOG3047 Predicted transcriptio 84.7 4.8 0.0001 28.5 6.1 51 43-93 47-98 (157)
28 PF14282 FlxA: FlxA-like prote 84.4 4.5 9.8E-05 26.7 5.6 36 10-45 42-77 (106)
29 PF04568 IATP: Mitochondrial A 82.7 4.3 9.3E-05 27.0 5.0 30 13-42 70-99 (100)
30 PF08700 Vps51: Vps51/Vps67; 82.6 8.8 0.00019 23.5 6.2 48 9-56 16-64 (87)
31 PRK09343 prefoldin subunit bet 82.6 10 0.00022 25.5 6.9 12 43-54 35-46 (121)
32 PRK13922 rod shape-determining 76.8 28 0.00062 25.9 8.5 66 14-90 71-142 (276)
33 PF09006 Surfac_D-trimer: Lung 74.5 13 0.00028 21.6 4.7 26 23-48 3-28 (46)
34 PTZ00454 26S protease regulato 73.7 34 0.00073 27.4 8.5 33 12-44 15-47 (398)
35 PF06013 WXG100: Proteins of 1 73.3 16 0.00034 21.3 5.9 34 12-45 4-37 (86)
36 PF01330 RuvA_N: RuvA N termin 71.2 4.9 0.00011 23.7 2.5 18 72-89 3-22 (61)
37 KOG3448 Predicted snRNP core p 70.1 5.2 0.00011 26.4 2.6 26 60-85 11-36 (96)
38 PF05377 FlaC_arch: Flagella a 67.4 24 0.00053 21.1 5.2 30 24-53 5-34 (55)
39 PF11629 Mst1_SARAH: C termina 66.7 24 0.00051 20.7 4.8 32 9-40 5-40 (49)
40 TIGR00219 mreC rod shape-deter 64.1 56 0.0012 25.0 7.7 10 81-90 131-140 (283)
41 KOG0728 26S proteasome regulat 63.9 38 0.00081 27.1 6.7 16 77-92 86-101 (404)
42 KOG1118 Lysophosphatidic acid 62.4 14 0.00031 29.5 4.2 46 5-50 195-240 (366)
43 PF07743 HSCB_C: HSCB C-termin 61.9 33 0.00071 20.7 5.3 42 13-55 25-66 (78)
44 PRK15422 septal ring assembly 61.8 35 0.00075 21.9 5.2 44 9-52 22-72 (79)
45 COG3074 Uncharacterized protei 61.0 8.5 0.00018 24.5 2.2 36 7-42 20-55 (79)
46 PF06937 EURL: EURL protein; 60.7 43 0.00094 26.2 6.5 48 8-55 215-266 (285)
47 PF02388 FemAB: FemAB family; 60.1 23 0.00051 28.2 5.1 10 66-75 303-312 (406)
48 cd04787 HTH_HMRTR_unk Helix-Tu 59.4 51 0.0011 22.1 6.4 50 21-70 81-130 (133)
49 cd04454 S1_Rrp4_like S1_Rrp4_l 59.3 11 0.00023 22.9 2.5 26 69-94 5-32 (82)
50 PRK03578 hscB co-chaperone Hsc 59.1 33 0.00072 24.5 5.3 43 13-55 115-157 (176)
51 PF04740 LXG: LXG domain of WX 58.7 30 0.00065 24.3 5.1 43 11-53 2-44 (204)
52 PF12757 DUF3812: Protein of u 58.0 54 0.0012 22.2 6.0 59 17-75 6-70 (126)
53 PF09340 NuA4: Histone acetylt 57.4 36 0.00077 21.4 4.7 29 14-42 4-32 (80)
54 TIGR02338 gimC_beta prefoldin, 56.9 52 0.0011 21.4 6.0 42 15-56 3-44 (110)
55 PF04120 Iron_permease: Low af 56.9 18 0.00039 25.1 3.5 29 5-33 88-116 (132)
56 PTZ00361 26 proteosome regulat 56.4 95 0.0021 25.4 8.1 42 14-56 60-101 (438)
57 PF14131 DUF4298: Domain of un 56.1 51 0.0011 21.0 5.7 34 14-47 2-35 (90)
58 PRK10328 DNA binding protein, 56.0 66 0.0014 22.3 6.8 45 10-54 19-63 (134)
59 cd04776 HTH_GnyR Helix-Turn-He 55.7 57 0.0012 21.5 6.7 38 15-52 76-113 (118)
60 PF04977 DivIC: Septum formati 54.3 44 0.00095 19.7 5.2 39 15-53 20-58 (80)
61 PRK10947 global DNA-binding tr 54.0 72 0.0016 22.1 6.8 44 10-53 19-62 (135)
62 PF13094 CENP-Q: CENP-Q, a CEN 54.0 42 0.00091 23.1 5.0 40 13-52 120-159 (160)
63 PF04124 Dor1: Dor1-like famil 52.2 78 0.0017 24.5 6.8 47 8-54 3-50 (338)
64 COG1382 GimC Prefoldin, chaper 52.2 74 0.0016 21.8 6.7 44 15-58 9-52 (119)
65 PF10398 DUF2443: Protein of u 51.8 19 0.00042 23.0 2.7 21 36-56 53-73 (79)
66 cd01725 LSm2 The eukaryotic Sm 51.5 25 0.00054 22.0 3.3 25 60-84 10-34 (81)
67 PF10512 Borealin: Cell divisi 50.8 27 0.00059 23.6 3.6 37 3-39 74-112 (116)
68 PRK00294 hscB co-chaperone Hsc 50.0 50 0.0011 23.6 5.0 42 14-55 113-154 (173)
69 PF04799 Fzo_mitofusin: fzo-li 50.0 63 0.0014 23.5 5.5 30 17-46 118-147 (171)
70 PF08181 DegQ: DegQ (SacQ) fam 49.7 48 0.001 18.9 5.0 34 13-46 5-38 (46)
71 TIGR01730 RND_mfp RND family e 49.6 1E+02 0.0022 22.6 6.8 9 12-20 57-65 (322)
72 PF10842 DUF2642: Protein of u 49.5 58 0.0013 20.0 4.6 36 50-90 14-51 (66)
73 cd04776 HTH_GnyR Helix-Turn-He 48.8 76 0.0017 20.9 5.7 29 26-54 80-108 (118)
74 PF10046 BLOC1_2: Biogenesis o 48.6 72 0.0016 20.5 6.6 41 14-54 51-94 (99)
75 PF07106 TBPIP: Tat binding pr 48.4 52 0.0011 22.8 4.9 17 22-38 89-105 (169)
76 KOG4196 bZIP transcription fac 48.4 94 0.002 21.8 6.4 41 15-55 77-117 (135)
77 PF03962 Mnd1: Mnd1 family; I 47.9 95 0.0021 22.4 6.2 28 28-55 137-164 (188)
78 cd05479 RP_DDI RP_DDI; retrope 47.8 14 0.00031 24.4 1.8 25 68-92 13-38 (124)
79 PF10148 SCHIP-1: Schwannomin- 47.8 47 0.001 25.4 4.8 37 7-43 168-204 (238)
80 PRK09795 aminopeptidase; Provi 47.6 1.1E+02 0.0023 23.6 6.9 31 63-93 182-218 (361)
81 PF13747 DUF4164: Domain of un 47.6 73 0.0016 20.4 6.3 40 15-54 42-85 (89)
82 PRK01356 hscB co-chaperone Hsc 47.4 61 0.0013 22.9 5.1 41 14-55 108-148 (166)
83 PF11254 DUF3053: Protein of u 46.9 84 0.0018 23.9 6.0 42 13-54 94-135 (229)
84 PRK00888 ftsB cell division pr 45.7 85 0.0018 20.6 5.7 42 13-54 28-69 (105)
85 KOG2264 Exostosin EXT1L [Signa 45.6 67 0.0015 28.2 5.8 30 12-41 93-122 (907)
86 cd01106 HTH_TipAL-Mta Helix-Tu 45.6 77 0.0017 20.1 6.0 44 11-54 57-101 (103)
87 COG3879 Uncharacterized protei 45.2 1.4E+02 0.003 22.9 7.6 62 16-77 54-128 (247)
88 PF07352 Phage_Mu_Gam: Bacteri 44.7 52 0.0011 22.5 4.3 36 15-50 28-63 (149)
89 PF00575 S1: S1 RNA binding do 44.3 23 0.00049 20.6 2.2 22 73-94 7-30 (74)
90 PF13815 Dzip-like_N: Iguana/D 43.2 76 0.0016 21.0 4.8 39 8-46 62-100 (118)
91 PF09798 LCD1: DNA damage chec 43.2 54 0.0012 28.5 4.9 28 15-42 4-31 (654)
92 PF08549 SWI-SNF_Ssr4: Fungal 43.0 90 0.0019 27.3 6.2 42 6-47 351-392 (669)
93 PF12128 DUF3584: Protein of u 42.7 48 0.001 30.2 4.7 44 6-49 587-630 (1201)
94 PF07195 FliD_C: Flagellar hoo 42.5 69 0.0015 23.5 4.9 14 22-35 203-216 (239)
95 KOG4230 C1-tetrahydrofolate sy 42.2 27 0.00058 30.7 2.9 32 62-93 207-238 (935)
96 PRK08032 fliD flagellar cappin 41.8 1.2E+02 0.0025 24.8 6.5 39 16-54 421-459 (462)
97 PF08317 Spc7: Spc7 kinetochor 41.8 1.5E+02 0.0032 23.0 6.8 13 9-21 203-215 (325)
98 cd01733 LSm10 The eukaryotic S 41.7 32 0.00069 21.4 2.6 25 60-84 18-42 (78)
99 PF09726 Macoilin: Transmembra 41.7 43 0.00093 29.1 4.2 41 15-55 541-581 (697)
100 PF01486 K-box: K-box region; 41.6 92 0.002 19.8 6.2 27 7-33 41-67 (100)
101 PF09789 DUF2353: Uncharacteri 41.4 1.3E+02 0.0027 24.0 6.4 40 12-51 189-228 (319)
102 PF12325 TMF_TATA_bd: TATA ele 41.3 1.1E+02 0.0024 20.7 6.5 34 12-45 16-49 (120)
103 COG1077 MreB Actin-like ATPase 41.3 30 0.00065 27.8 2.9 22 68-92 143-164 (342)
104 PRK12897 methionine aminopepti 41.0 1.1E+02 0.0024 22.3 5.8 17 77-93 84-100 (248)
105 cd00894 PI3Kc_IB_gamma Phospho 40.6 1.4E+02 0.003 24.0 6.7 62 24-85 10-76 (365)
106 PF06698 DUF1192: Protein of u 40.6 82 0.0018 19.0 5.3 33 22-54 24-56 (59)
107 PRK15396 murein lipoprotein; P 40.3 96 0.0021 19.6 5.4 27 14-40 27-53 (78)
108 PF12548 DUF3740: Sulfatase pr 40.3 1.3E+02 0.0028 21.2 5.7 33 13-45 100-132 (145)
109 TIGR01242 26Sp45 26S proteasom 39.9 45 0.00098 25.8 3.8 37 17-53 4-40 (364)
110 PF13094 CENP-Q: CENP-Q, a CEN 39.1 1.3E+02 0.0027 20.7 6.3 31 11-41 19-49 (160)
111 PF05185 PRMT5: PRMT5 arginine 38.8 31 0.00068 28.2 2.8 11 81-91 186-196 (448)
112 PF08946 Osmo_CC: Osmosensory 38.8 80 0.0017 18.3 4.0 30 17-46 10-39 (46)
113 PRK04654 sec-independent trans 38.0 1.7E+02 0.0037 22.1 6.3 48 21-68 60-112 (214)
114 PHA02666 hypothetical protein; 37.5 90 0.002 24.0 4.9 28 15-42 219-246 (287)
115 PRK10879 proline aminopeptidas 37.5 1.3E+02 0.0029 24.2 6.2 18 76-93 247-264 (438)
116 PF04100 Vps53_N: Vps53-like, 37.0 1.6E+02 0.0035 23.5 6.5 40 16-55 75-114 (383)
117 cd01722 Sm_F The eukaryotic Sm 36.9 48 0.001 19.8 2.8 25 60-84 10-34 (68)
118 COG5509 Uncharacterized small 36.8 1E+02 0.0022 19.0 4.3 31 23-53 29-59 (65)
119 cd01723 LSm4 The eukaryotic Sm 36.7 39 0.00085 20.7 2.4 25 60-84 10-34 (76)
120 smart00502 BBC B-Box C-termina 36.7 1.1E+02 0.0023 19.1 5.0 28 27-54 73-100 (127)
121 PF06657 Cep57_MT_bd: Centroso 36.4 1.1E+02 0.0024 19.1 5.2 36 10-45 8-43 (79)
122 PRK13607 proline dipeptidase; 36.3 2.3E+02 0.0051 22.9 7.5 15 78-92 237-251 (443)
123 PRK04863 mukB cell division pr 36.2 1.8E+02 0.004 27.6 7.5 47 7-53 430-476 (1486)
124 cd05687 S1_RPS1_repeat_ec1_hs1 36.2 44 0.00095 19.2 2.5 21 73-93 3-25 (70)
125 KOG2391 Vacuolar sorting prote 36.1 1.4E+02 0.003 24.3 5.9 25 15-39 249-273 (365)
126 PF14723 SSFA2_C: Sperm-specif 36.1 1E+02 0.0023 22.6 4.8 25 13-37 146-170 (179)
127 PRK06798 fliD flagellar cappin 35.8 1.7E+02 0.0036 23.9 6.5 41 16-56 394-434 (440)
128 PF00429 TLV_coat: ENV polypro 35.7 1.4E+02 0.003 25.2 6.2 44 13-56 422-469 (561)
129 PF10392 COG5: Golgi transport 35.4 1.4E+02 0.003 20.0 6.1 26 15-40 68-93 (132)
130 COG0190 FolD 5,10-methylene-te 35.3 37 0.00081 26.5 2.6 31 63-93 202-232 (283)
131 KOG4603 TBP-1 interacting prot 35.0 77 0.0017 23.5 4.0 29 12-40 116-144 (201)
132 PF07716 bZIP_2: Basic region 34.8 90 0.0019 17.7 4.7 20 19-38 32-51 (54)
133 PF12841 YvrJ: YvrJ protein fa 34.6 54 0.0012 18.0 2.5 20 22-41 18-37 (38)
134 cd04769 HTH_MerR2 Helix-Turn-H 34.5 1.3E+02 0.0028 19.5 6.4 32 22-53 82-113 (116)
135 cd02986 DLP Dim1 family, Dim1- 34.4 30 0.00065 23.4 1.7 14 78-91 75-88 (114)
136 PF03980 Nnf1: Nnf1 ; InterPr 34.3 1.3E+02 0.0028 19.3 7.4 47 6-52 58-106 (109)
137 PF04728 LPP: Lipoprotein leuc 34.2 1.1E+02 0.0023 18.4 6.1 25 15-39 6-30 (56)
138 smart00787 Spc7 Spc7 kinetocho 34.1 1.8E+02 0.0039 22.7 6.3 18 9-26 198-215 (312)
139 COG3879 Uncharacterized protei 34.0 1.9E+02 0.0042 22.2 6.2 24 16-39 61-84 (247)
140 PRK09578 periplasmic multidrug 33.9 1.4E+02 0.003 23.2 5.6 62 9-70 91-180 (385)
141 PRK10719 eutA reactivating fac 33.9 27 0.00059 29.1 1.7 50 42-92 97-157 (475)
142 KOG3192 Mitochondrial J-type c 33.6 1.5E+02 0.0031 21.6 5.2 40 15-55 115-154 (168)
143 PF03357 Snf7: Snf7; InterPro 33.3 1.5E+02 0.0032 19.8 5.5 41 17-57 46-86 (171)
144 COG1792 MreC Cell shape-determ 33.3 2.2E+02 0.0048 21.8 7.8 10 81-90 131-140 (284)
145 cd07618 BAR_Rich1 The Bin/Amph 33.2 2.1E+02 0.0045 21.8 6.3 39 12-50 193-231 (246)
146 TIGR01843 type_I_hlyD type I s 33.0 2.2E+02 0.0048 21.7 7.2 9 62-70 272-280 (423)
147 PRK14127 cell division protein 33.0 1.5E+02 0.0033 19.8 5.7 44 10-53 21-64 (109)
148 cd05694 S1_Rrp5_repeat_hs2_sc2 32.7 56 0.0012 19.8 2.6 24 70-93 4-30 (74)
149 PF13861 FLgD_tudor: FlgD Tudo 32.6 1E+02 0.0023 17.8 3.8 33 59-91 10-48 (61)
150 PRK14575 putative peptidase; P 32.5 1.4E+02 0.0031 23.6 5.6 17 77-93 252-268 (406)
151 PF10212 TTKRSYEDQ: Predicted 32.5 1.7E+02 0.0036 24.9 6.1 39 15-53 476-514 (518)
152 TIGR01541 tape_meas_lam_C phag 31.7 2.1E+02 0.0046 22.5 6.3 31 15-45 119-149 (332)
153 TIGR02420 dksA RNA polymerase- 31.7 1.5E+02 0.0032 19.3 5.3 26 12-37 1-26 (110)
154 PHA03155 hypothetical protein; 31.6 1.5E+02 0.0032 20.3 4.7 33 1-37 1-33 (115)
155 PRK14576 putative endopeptidas 31.4 1.7E+02 0.0036 23.2 5.8 31 64-94 233-268 (405)
156 TIGR02469 CbiT precorrin-6Y C5 31.3 35 0.00076 21.1 1.6 12 81-92 19-30 (124)
157 PF10438 Cyc-maltodext_C: Cycl 31.0 50 0.0011 20.7 2.2 23 65-88 5-27 (78)
158 TIGR00714 hscB Fe-S protein as 30.8 1.7E+02 0.0036 20.4 5.1 37 17-54 102-138 (157)
159 PF13991 BssS: BssS protein fa 30.6 74 0.0016 20.1 2.9 23 12-34 42-64 (73)
160 PRK10869 recombination and rep 30.5 1.5E+02 0.0033 24.7 5.6 22 13-34 318-339 (553)
161 cd04766 HTH_HspR Helix-Turn-He 30.5 1.4E+02 0.003 18.5 4.6 30 12-42 59-88 (91)
162 PRK06800 fliH flagellar assemb 30.4 2.4E+02 0.0052 21.2 6.2 43 13-55 39-81 (228)
163 cd01724 Sm_D1 The eukaryotic S 30.3 94 0.002 19.8 3.5 25 60-84 10-34 (90)
164 COG4842 Uncharacterized protei 30.1 1.5E+02 0.0033 18.9 5.7 35 11-45 6-40 (97)
165 PF10805 DUF2730: Protein of u 30.1 1.6E+02 0.0035 19.2 5.6 37 18-54 48-86 (106)
166 PRK15173 peptidase; Provisiona 30.0 2.4E+02 0.0052 21.6 6.3 18 77-94 169-186 (323)
167 TIGR03689 pup_AAA proteasome A 29.9 2.7E+02 0.0058 23.4 6.9 39 15-56 4-42 (512)
168 cd05166 PI3Kc_II Phosphoinosit 29.8 2.7E+02 0.0058 22.1 6.7 61 24-85 10-70 (353)
169 PF11853 DUF3373: Protein of u 29.6 55 0.0012 27.5 2.8 19 27-45 32-50 (489)
170 PF06295 DUF1043: Protein of u 29.6 1.8E+02 0.0039 19.6 5.5 15 31-45 52-66 (128)
171 PRK13729 conjugal transfer pil 29.5 1.7E+02 0.0038 24.5 5.7 9 44-52 108-116 (475)
172 PF11598 COMP: Cartilage oligo 29.4 1.2E+02 0.0025 17.3 3.9 30 16-45 12-41 (45)
173 PRK14188 bifunctional 5,10-met 29.3 46 0.001 25.8 2.2 30 63-92 204-233 (296)
174 PF02527 GidB: rRNA small subu 29.3 29 0.00062 24.9 1.0 7 85-91 52-58 (184)
175 TIGR02209 ftsL_broad cell divi 29.3 1.3E+02 0.0029 18.0 4.9 33 15-47 27-59 (85)
176 PF11694 DUF3290: Protein of u 29.2 1.9E+02 0.0041 20.3 5.2 13 81-93 107-119 (149)
177 PRK05771 V-type ATP synthase s 29.2 2.6E+02 0.0055 23.6 6.8 40 18-57 92-131 (646)
178 PF09870 DUF2097: Uncharacteri 29.1 1.2E+02 0.0025 19.7 3.8 41 47-88 7-48 (86)
179 PF08317 Spc7: Spc7 kinetochor 29.0 2.7E+02 0.0059 21.5 6.7 18 22-39 240-257 (325)
180 KOG0727 26S proteasome regulat 29.0 1.9E+02 0.0042 23.2 5.6 49 8-56 21-73 (408)
181 PRK07281 methionine aminopepti 28.8 1.8E+02 0.0039 22.2 5.4 16 76-91 87-102 (286)
182 PF00631 G-gamma: GGL domain; 28.8 89 0.0019 18.6 3.1 19 19-37 2-20 (68)
183 PF12210 Hrs_helical: Hepatocy 28.7 1.8E+02 0.0039 19.3 5.3 27 30-56 57-83 (96)
184 PF05397 Med15_fungi: Mediator 28.6 1.8E+02 0.004 19.4 5.9 44 11-55 28-71 (115)
185 PF08123 DOT1: Histone methyla 28.4 36 0.00078 24.8 1.4 12 81-92 42-53 (205)
186 PF12604 gp37_C: Tail fiber pr 28.3 51 0.0011 23.2 2.1 25 67-91 22-46 (145)
187 PF04048 Sec8_exocyst: Sec8 ex 28.1 2E+02 0.0043 19.6 6.4 42 14-55 42-91 (142)
188 cd04455 S1_NusA S1_NusA: N-uti 28.1 52 0.0011 19.2 1.9 18 73-90 6-25 (67)
189 cd01719 Sm_G The eukaryotic Sm 28.0 69 0.0015 19.5 2.5 23 61-83 10-32 (72)
190 TIGR02383 Hfq RNA chaperone Hf 28.0 81 0.0018 19.1 2.7 30 60-89 14-43 (61)
191 TIGR00500 met_pdase_I methioni 27.9 1.9E+02 0.0041 20.8 5.2 18 76-93 82-99 (247)
192 PF10158 LOH1CR12: Tumour supp 27.6 2.1E+02 0.0045 19.7 6.1 31 28-58 89-119 (131)
193 PRK14872 rod shape-determining 27.5 3.2E+02 0.0069 21.8 6.9 64 13-90 58-127 (337)
194 PF15136 UPF0449: Uncharacteri 27.4 1.9E+02 0.0041 19.2 5.1 31 19-49 64-94 (97)
195 CHL00154 rpl29 ribosomal prote 27.4 1.5E+02 0.0033 18.0 5.3 32 1-32 1-32 (67)
196 PRK06664 fliD flagellar hook-a 27.3 2.6E+02 0.0056 24.3 6.5 41 16-56 615-655 (661)
197 PF10393 Matrilin_ccoil: Trime 27.3 1.3E+02 0.0028 17.3 5.2 29 15-43 12-40 (47)
198 PHA02562 46 endonuclease subun 27.3 2.7E+02 0.0058 22.5 6.4 38 16-53 303-340 (562)
199 cd01726 LSm6 The eukaryotic Sm 27.3 1.3E+02 0.0029 17.7 3.6 25 60-84 9-33 (67)
200 PF07334 IFP_35_N: Interferon- 27.3 1.7E+02 0.0037 18.5 4.4 26 14-39 2-27 (76)
201 KOG2629 Peroxisomal membrane a 27.2 2.3E+02 0.005 22.4 5.7 36 20-55 155-190 (300)
202 PF11305 DUF3107: Protein of u 27.1 47 0.001 20.9 1.6 18 58-75 44-61 (74)
203 smart00338 BRLZ basic region l 27.0 1.4E+02 0.003 17.4 5.7 33 22-54 29-61 (65)
204 PF04367 DUF502: Protein of un 27.0 1.8E+02 0.0039 18.8 5.8 50 34-83 30-83 (108)
205 TIGR02231 conserved hypothetic 27.0 3.5E+02 0.0076 22.1 7.2 45 9-53 121-165 (525)
206 PF06005 DUF904: Protein of un 26.7 1.6E+02 0.0035 18.1 6.7 25 24-48 37-61 (72)
207 TIGR02542 B_forsyth_147 Bacter 26.6 37 0.0008 23.7 1.2 22 70-92 42-63 (145)
208 PRK00736 hypothetical protein; 26.6 1.6E+02 0.0034 17.9 4.8 26 14-39 21-46 (68)
209 PRK05014 hscB co-chaperone Hsc 26.5 2.1E+02 0.0045 20.2 5.1 38 17-55 115-152 (171)
210 PRK11281 hypothetical protein; 26.4 3.8E+02 0.0082 24.9 7.7 32 7-38 116-147 (1113)
211 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 26.4 74 0.0016 19.1 2.4 24 71-94 7-32 (86)
212 cd05790 S1_Rrp40 S1_Rrp40: Rrp 26.2 71 0.0015 20.4 2.4 21 74-94 10-32 (86)
213 COG1097 RRP4 RNA-binding prote 26.1 72 0.0015 24.4 2.7 32 62-94 50-90 (239)
214 TIGR00634 recN DNA repair prot 26.1 2.1E+02 0.0045 23.8 5.6 20 13-32 323-342 (563)
215 cd01716 Hfq Hfq, an abundant, 25.8 93 0.002 18.8 2.7 30 60-89 10-39 (61)
216 PF07889 DUF1664: Protein of u 25.7 2.3E+02 0.0049 19.5 6.3 14 22-35 64-77 (126)
217 KOG1500 Protein arginine N-met 25.7 38 0.00083 27.9 1.3 12 80-91 176-187 (517)
218 cd07211 Pat_PNPLA8 Patatin-lik 25.6 73 0.0016 24.0 2.8 18 11-28 62-79 (308)
219 PRK11020 hypothetical protein; 25.5 1.9E+02 0.0042 19.8 4.5 25 20-44 32-56 (118)
220 COG3584 Uncharacterized protei 25.4 33 0.0007 23.3 0.7 14 63-76 56-69 (109)
221 TIGR00012 L29 ribosomal protei 25.3 1.5E+02 0.0032 17.1 3.6 25 8-32 1-25 (55)
222 PF13851 GAS: Growth-arrest sp 25.3 2.7E+02 0.0058 20.2 6.0 38 18-55 68-105 (201)
223 PRK14549 50S ribosomal protein 25.3 79 0.0017 19.3 2.4 27 6-32 6-32 (69)
224 COG0806 RimM RimM protein, req 25.1 1E+02 0.0022 22.2 3.3 32 60-92 141-172 (174)
225 PF14071 YlbD_coat: Putative c 25.1 1.5E+02 0.0032 20.5 3.9 26 22-47 80-105 (124)
226 PF10368 YkyA: Putative cell-w 25.0 2.5E+02 0.0054 20.5 5.4 35 22-56 160-194 (204)
227 PF12126 DUF3583: Protein of u 25.0 1.1E+02 0.0025 24.3 3.7 39 17-55 59-97 (324)
228 PF09668 Asp_protease: Asparty 25.0 61 0.0013 22.1 2.0 29 63-92 17-46 (124)
229 PF06120 Phage_HK97_TLTM: Tail 24.9 3E+02 0.0065 21.6 6.1 44 9-52 64-107 (301)
230 PRK00888 ftsB cell division pr 24.9 2.1E+02 0.0045 18.7 5.3 26 15-40 37-62 (105)
231 PRK10803 tol-pal system protei 24.8 2.2E+02 0.0047 21.5 5.1 19 18-36 60-78 (263)
232 PF15397 DUF4618: Domain of un 24.7 3.3E+02 0.0071 21.0 6.4 42 15-56 70-111 (258)
233 PF08824 Serine_rich: Serine r 24.6 1.2E+02 0.0027 21.6 3.6 40 18-57 76-115 (159)
234 PF10152 DUF2360: Predicted co 24.4 2.5E+02 0.0053 19.4 5.2 42 15-56 10-51 (148)
235 cd07615 BAR_Endophilin_A3 The 24.4 3.1E+02 0.0067 20.5 6.1 40 8-47 179-218 (223)
236 PF06428 Sec2p: GDP/GTP exchan 24.4 2.1E+02 0.0047 18.7 5.2 21 15-35 11-31 (100)
237 PF13600 DUF4140: N-terminal d 24.4 1.9E+02 0.0041 18.1 5.0 14 24-37 75-88 (104)
238 COG0006 PepP Xaa-Pro aminopept 24.2 2.8E+02 0.0061 21.5 5.8 33 61-93 207-245 (384)
239 PF13815 Dzip-like_N: Iguana/D 24.2 2.2E+02 0.0047 18.7 6.6 37 16-52 77-113 (118)
240 smart00810 Alpha-amyl_C2 Alpha 24.1 62 0.0013 19.6 1.7 22 69-93 17-38 (61)
241 PRK05716 methionine aminopepti 24.1 2.7E+02 0.006 19.9 5.4 17 77-93 85-101 (252)
242 COG5442 FlaF Flagellar biosynt 24.0 1.3E+02 0.0027 20.5 3.3 32 23-54 17-48 (115)
243 PF13801 Metal_resist: Heavy-m 24.0 1.8E+02 0.0039 17.7 6.5 32 11-42 41-72 (125)
244 PRK15030 multidrug efflux syst 23.9 3.6E+02 0.0078 21.1 8.1 11 77-87 205-215 (397)
245 PF10267 Tmemb_cc2: Predicted 23.8 3E+02 0.0065 22.5 6.0 25 15-39 265-289 (395)
246 PRK09618 flgD flagellar basal 23.8 2.6E+02 0.0057 19.6 7.0 21 60-80 91-111 (142)
247 PRK10780 periplasmic chaperone 23.6 2.6E+02 0.0055 19.3 5.8 28 50-78 127-154 (165)
248 PF00337 Gal-bind_lectin: Gala 23.5 84 0.0018 20.5 2.4 26 66-91 10-36 (133)
249 PF10372 YojJ: Bacterial membr 23.5 88 0.0019 19.5 2.3 25 19-43 10-34 (70)
250 PRK01773 hscB co-chaperone Hsc 23.4 2.6E+02 0.0056 19.9 5.1 19 17-35 116-134 (173)
251 PRK14591 rimM 16S rRNA-process 23.4 1.4E+02 0.0031 20.9 3.7 32 60-92 138-169 (169)
252 PRK09973 putative outer membra 23.4 2.2E+02 0.0047 18.4 5.4 28 13-40 25-52 (85)
253 PF02541 Ppx-GppA: Ppx/GppA ph 23.2 48 0.001 24.6 1.3 13 79-91 110-122 (285)
254 PF08182 Pedibin: Pedibin/Hym- 23.1 1.4E+02 0.0031 16.2 3.8 32 24-55 2-33 (35)
255 COG5434 PGU1 Endopygalactoruna 23.1 1.8E+02 0.0038 24.8 4.7 43 43-91 100-142 (542)
256 PF12443 AKNA: AT-hook-contain 23.0 1.2E+02 0.0026 20.5 3.0 27 21-47 47-73 (106)
257 PRK00295 hypothetical protein; 23.0 1.9E+02 0.004 17.5 5.4 26 14-39 21-46 (68)
258 PRK00055 ribonuclease Z; Revie 23.0 66 0.0014 23.0 2.0 21 69-92 20-40 (270)
259 PF06156 DUF972: Protein of un 23.0 2.4E+02 0.0051 18.7 6.7 33 15-47 4-36 (107)
260 PF00170 bZIP_1: bZIP transcri 22.8 1.7E+02 0.0037 17.0 5.9 31 22-52 29-59 (64)
261 KOG3010 Methyltransferase [Gen 22.8 40 0.00088 26.1 0.8 15 77-91 29-43 (261)
262 PF13679 Methyltransf_32: Meth 22.8 58 0.0013 21.7 1.5 12 80-91 24-35 (141)
263 PRK08453 fliD flagellar cappin 22.7 2.3E+02 0.0049 24.8 5.4 26 22-47 642-667 (673)
264 cd00891 PI3Kc Phosphoinositide 22.7 2.9E+02 0.0064 21.9 5.7 60 24-84 10-69 (352)
265 smart00316 S1 Ribosomal protei 22.7 94 0.002 16.9 2.3 21 73-93 5-27 (72)
266 PF12308 Noelin-1: Neurogenesi 22.4 1.2E+02 0.0026 20.3 2.9 19 22-40 43-61 (101)
267 TIGR01000 bacteriocin_acc bact 22.2 4.1E+02 0.009 21.2 7.0 11 70-80 356-366 (457)
268 cd07592 BAR_Endophilin_A The B 22.2 3.4E+02 0.0073 20.2 6.0 35 13-47 184-218 (223)
269 PF02370 M: M protein repeat; 22.1 1.2E+02 0.0025 14.8 3.6 19 20-38 2-20 (21)
270 PRK14181 bifunctional 5,10-met 22.0 45 0.00098 25.9 1.0 31 62-92 201-232 (287)
271 PF11285 DUF3086: Protein of u 22.0 1.5E+02 0.0032 23.2 3.8 29 12-40 4-32 (283)
272 cd07199 Pat17_PNPLA8_PNPLA9_li 22.0 67 0.0015 23.5 1.9 15 79-93 160-174 (258)
273 PRK00306 50S ribosomal protein 21.9 1.3E+02 0.0028 17.9 2.8 25 8-32 5-29 (66)
274 PF02970 TBCA: Tubulin binding 21.9 2.2E+02 0.0048 18.0 5.1 32 24-55 43-74 (90)
275 COG5314 Conjugal transfer/entr 21.7 3.8E+02 0.0083 20.7 6.1 43 14-56 53-106 (252)
276 TIGR02449 conserved hypothetic 21.7 2.1E+02 0.0045 17.5 6.4 30 14-43 9-38 (65)
277 KOG3771 Amphiphysin [Intracell 21.7 3.3E+02 0.0072 22.8 5.9 38 15-52 40-77 (460)
278 COG4008 Predicted metal-bindin 21.6 1.9E+02 0.0041 20.4 3.9 44 11-54 90-137 (153)
279 COG4822 CbiK Cobalamin biosynt 21.6 1.7E+02 0.0037 22.6 4.0 50 22-71 91-146 (265)
280 cd01282 HTH_MerR-like_sg3 Heli 21.6 2.4E+02 0.0051 18.2 5.1 25 29-53 84-108 (112)
281 PF13489 Methyltransf_23: Meth 21.5 68 0.0015 20.7 1.7 13 80-92 21-33 (161)
282 COG3923 PriC Primosomal replic 21.4 3.4E+02 0.0073 19.9 5.9 26 29-54 143-168 (175)
283 PF11502 BCL9: B-cell lymphoma 21.3 1E+02 0.0022 17.3 2.1 13 12-24 2-14 (40)
284 PF10779 XhlA: Haemolysin XhlA 21.3 2E+02 0.0043 17.2 5.9 37 16-52 3-39 (71)
285 PF10376 Mei5: Double-strand r 21.1 2.4E+02 0.0053 21.0 4.7 32 11-42 130-161 (221)
286 PF10498 IFT57: Intra-flagella 21.1 3E+02 0.0065 22.0 5.5 21 33-53 277-297 (359)
287 PRK00409 recombination and DNA 21.1 4.2E+02 0.0091 23.3 6.7 25 66-90 637-669 (782)
288 KOG1760 Molecular chaperone Pr 21.1 3E+02 0.0065 19.2 5.5 27 15-41 84-110 (131)
289 KOG3470 Beta-tubulin folding c 21.1 2.5E+02 0.0055 18.9 4.3 33 24-56 49-81 (107)
290 PF00797 Acetyltransf_2: N-ace 21.0 56 0.0012 23.5 1.3 14 80-93 96-109 (240)
291 smart00243 GAS2 Growth-Arrest- 21.0 59 0.0013 20.6 1.2 13 81-93 45-57 (73)
292 cd01721 Sm_D3 The eukaryotic S 21.0 1.3E+02 0.0027 18.1 2.7 25 60-84 9-33 (70)
293 PF05276 SH3BP5: SH3 domain-bi 20.9 3.8E+02 0.0082 20.3 5.9 34 23-56 185-218 (239)
294 PF02646 RmuC: RmuC family; I 20.9 3.9E+02 0.0085 20.4 6.4 17 26-42 31-47 (304)
295 PF09177 Syntaxin-6_N: Syntaxi 20.7 2.3E+02 0.005 17.8 5.2 30 13-42 33-62 (97)
296 PF10845 DUF2576: Protein of u 20.7 1.8E+02 0.0038 16.9 3.0 22 21-42 13-34 (48)
297 COG0497 RecN ATPase involved i 20.7 3.7E+02 0.0079 23.1 6.1 25 12-36 318-342 (557)
298 TIGR02281 clan_AA_DTGA clan AA 20.7 1.1E+02 0.0023 20.2 2.5 24 70-93 10-34 (121)
299 PF08286 Spc24: Spc24 subunit 20.6 33 0.00072 22.7 0.0 39 16-54 3-41 (118)
300 smart00150 SPEC Spectrin repea 20.5 1.9E+02 0.0042 16.7 5.2 33 15-47 34-66 (101)
301 PF02344 Myc-LZ: Myc leucine z 20.5 1.6E+02 0.0034 15.8 4.1 25 16-40 5-29 (32)
302 cd05702 S1_Rrp5_repeat_hs11_sc 20.5 1.1E+02 0.0024 17.7 2.3 20 73-92 3-24 (70)
303 COG0357 GidB Predicted S-adeno 20.5 51 0.0011 24.5 1.0 10 82-91 68-77 (215)
304 cd07614 BAR_Endophilin_A2 The 20.4 3.2E+02 0.0068 20.5 5.2 39 9-47 180-218 (223)
305 PF08880 QLQ: QLQ; InterPro: 20.4 1.5E+02 0.0033 16.0 2.7 14 11-24 2-15 (37)
306 cd04786 HTH_MerR-like_sg7 Heli 20.4 2.8E+02 0.0061 18.6 6.0 36 19-54 78-113 (131)
307 PRK14180 bifunctional 5,10-met 20.3 52 0.0011 25.5 1.0 29 64-92 205-233 (282)
308 COG1722 XseB Exonuclease VII s 20.2 2.4E+02 0.0053 17.8 4.7 41 14-54 16-56 (81)
309 PRK00395 hfq RNA-binding prote 20.1 1.3E+02 0.0028 19.2 2.6 30 60-89 18-47 (79)
310 PF13514 AAA_27: AAA domain 20.0 4.2E+02 0.0091 24.0 6.7 40 11-50 888-927 (1111)
311 PF04999 FtsL: Cell division p 20.0 2.4E+02 0.0051 17.6 5.6 27 19-45 42-68 (97)
No 1
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=217.36 Aligned_cols=93 Identities=53% Similarity=0.748 Sum_probs=90.1
Q ss_pred CC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEec
Q 034469 1 MA-SSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLD 79 (94)
Q Consensus 1 m~-~~~~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~ 79 (94)
|+ .+++||++.|+|+||.++++|+++|+++|++|+++|+.++.||.+|++||+.+++.++|+++|||||+|+||||++.
T Consensus 1 ma~~s~~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~ 80 (153)
T KOG3048|consen 1 MAEESKGIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLS 80 (153)
T ss_pred CCCcccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceec
Confidence 44 35889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEecCCCcc
Q 034469 80 DARKVLVDIGTEND 93 (94)
Q Consensus 80 d~~kVlVdIGtGy~ 93 (94)
|++|||||||||||
T Consensus 81 d~~k~lVDIGTGYy 94 (153)
T KOG3048|consen 81 DNSKFLVDIGTGYY 94 (153)
T ss_pred cccceeEeccCceE
Confidence 99999999999998
No 2
>PRK01203 prefoldin subunit alpha; Provisional
Probab=99.94 E-value=2.4e-26 Score=158.97 Aligned_cols=79 Identities=11% Similarity=0.278 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCccC
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG 94 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~~ 94 (94)
+++.+..+.+++|++.|+++++.|+.++++|.+|+++|+.++ .++++++|||||+|+||||++.|+++||||||||||.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~-~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~V 81 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNE-LDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYI 81 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEE
Confidence 567888899999999999999999999999999999999976 4567999999999999999999999999999999983
No 3
>PRK14011 prefoldin subunit alpha; Provisional
Probab=99.94 E-value=4e-26 Score=160.06 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
++++...-++|.+|+++|+++++.|+.++++|.+|+++|+.++ .++++|||||+|+||||+++|+|+||||||||||
T Consensus 5 lq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~---~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~ 81 (144)
T PRK14011 5 LQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK---TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIY 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeE
Confidence 5666666799999999999999999999999999999999876 4799999999999999999999999999999998
Q ss_pred C
Q 034469 94 G 94 (94)
Q Consensus 94 ~ 94 (94)
.
T Consensus 82 V 82 (144)
T PRK14011 82 L 82 (144)
T ss_pred E
Confidence 3
No 4
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-24 Score=151.40 Aligned_cols=85 Identities=28% Similarity=0.427 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecC
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIG 89 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIG 89 (94)
++.++++|.+..+.|+++++.|++++..|+.++++|+.|+++|+.++...+|+|+|||+|+++||+|+++|+++|||+||
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG 83 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG 83 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence 45789999999999999999999999999999999999999999999866689999999999999999999999999999
Q ss_pred CCccC
Q 034469 90 TENDG 94 (94)
Q Consensus 90 tGy~~ 94 (94)
+|||+
T Consensus 84 sg~~a 88 (145)
T COG1730 84 SGYYA 88 (145)
T ss_pred Cceee
Confidence 99995
No 5
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.89 E-value=1.4e-22 Score=136.87 Aligned_cols=80 Identities=33% Similarity=0.431 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
+++|.+..++|+++++.|++++..|..++.+|..++++|+.+++. ++.++|||||+++||||++.++++|+|+||+|||
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~ 79 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY 79 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Confidence 478999999999999999999999999999999999999999865 7899999999999999999999999999999998
Q ss_pred C
Q 034469 94 G 94 (94)
Q Consensus 94 ~ 94 (94)
.
T Consensus 80 v 80 (126)
T TIGR00293 80 V 80 (126)
T ss_pred E
Confidence 3
No 6
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.87 E-value=2.3e-21 Score=133.27 Aligned_cols=82 Identities=26% Similarity=0.481 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
.+++|....++|+++++.|++++..|..++.++..|+++|+.+++..++.++|||||+++||+|++.++++|+|+|||||
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~ 86 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGY 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCE
Confidence 46888899999999999999999999999999999999999998766789999999999999999999999999999999
Q ss_pred cC
Q 034469 93 DG 94 (94)
Q Consensus 93 ~~ 94 (94)
|.
T Consensus 87 ~v 88 (140)
T PRK03947 87 SA 88 (140)
T ss_pred EE
Confidence 83
No 7
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.86 E-value=5e-21 Score=129.75 Aligned_cols=81 Identities=35% Similarity=0.463 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
+++|..+.++++++++.+++++..|+..+.+|..++++|+.+++...+.++|||||+++|+||++.++++|+|+||+|||
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence 47899999999999999999999999999999999999999987667899999999999999999999999999999998
Q ss_pred C
Q 034469 94 G 94 (94)
Q Consensus 94 ~ 94 (94)
.
T Consensus 81 v 81 (129)
T cd00584 81 V 81 (129)
T ss_pred E
Confidence 3
No 8
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.80 E-value=8.3e-19 Score=117.49 Aligned_cols=81 Identities=31% Similarity=0.444 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
+++|....++|+++++.|++++..|+..+.+|..++++|+.+.....+.++++|+|+++||||++.++++|+|+||+|||
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Confidence 47899999999999999999999999999999999999999988777889999999999999999999999999999998
Q ss_pred C
Q 034469 94 G 94 (94)
Q Consensus 94 ~ 94 (94)
.
T Consensus 81 v 81 (129)
T cd00890 81 V 81 (129)
T ss_pred E
Confidence 3
No 9
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=99.76 E-value=8e-19 Score=116.84 Aligned_cols=71 Identities=28% Similarity=0.479 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCccC
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG 94 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~~ 94 (94)
|+++++.+++.+..|+..+.+|..++++|+.|+..+.+.++|||+|+++||||++.++++|+|+||+|||+
T Consensus 1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~v 71 (120)
T PF02996_consen 1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYV 71 (120)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEE
Confidence 45678899999999999999999999999999875778999999999999999999999999999999984
No 10
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=9.4e-05 Score=59.99 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCccC
Q 034469 38 IRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG 94 (94)
Q Consensus 38 L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~~ 94 (94)
-+.....|...++-++.+. .+=.-+||||||.-.|+||+++-++.|.|..|.||||
T Consensus 22 ~~~v~~dye~~~erl~~~~-kkLs~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~ 77 (514)
T KOG3130|consen 22 RKKVDNDYEALRERLSTLP-KKLSYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFA 77 (514)
T ss_pred HHHHhhhHHHHHHHHHHhh-hhcccceeeecccccccccceeeechhhhhhccchHh
Confidence 3444566777777777764 3345799999999999999999999999999999996
No 11
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=97.22 E-value=0.00052 Score=45.54 Aligned_cols=68 Identities=26% Similarity=0.370 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------------CCCCeEEEecCCCeeeeeEecc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR-------------PQGAKMLVPLTASLYVPGTLDD 80 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~-------------~~~~eiLVPLt~slyV~gkl~d 80 (94)
.++|.+..+.+.++++.++..+..++.+...+.....+....... .++.+++|+||.+.||.-.+.+
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e 87 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence 467777778999999999999999998888777766555443211 1567899999999999987765
Q ss_pred C
Q 034469 81 A 81 (94)
Q Consensus 81 ~ 81 (94)
.
T Consensus 88 A 88 (129)
T cd00890 88 A 88 (129)
T ss_pred H
Confidence 4
No 12
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=96.66 E-value=0.0043 Score=41.68 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhccC-------CCCCCeEEEecCCCeeeeeEecc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST------ALHDLSL-------RPQGAKMLVPLTASLYVPGTLDD 80 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~------al~~l~~-------~~~~~eiLVPLt~slyV~gkl~d 80 (94)
.++|.+..+.++++++.++..+..+..+...+..-.. ++-.+.. -.+..+++||||++.||.-.+.+
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~e 87 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEE 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHH
Confidence 4677777788999999999999998877766655543 1111211 13457899999999999987765
Q ss_pred C
Q 034469 81 A 81 (94)
Q Consensus 81 ~ 81 (94)
.
T Consensus 88 A 88 (129)
T cd00584 88 A 88 (129)
T ss_pred H
Confidence 4
No 13
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.044 Score=38.70 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccC----------CCCCCeEEEecCCCeeeeeE
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH---DLSL----------RPQGAKMLVPLTASLYVPGT 77 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~---~l~~----------~~~~~eiLVPLt~slyV~gk 77 (94)
++.+.+.-+.|++++..|..++..++.+...+...+..=+ .|=| -....+++||||+|.||.=.
T Consensus 15 lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~ 91 (145)
T COG1730 15 LQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKS 91 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeec
Confidence 4667777788999999999999999998877666543331 1211 13347999999999999644
No 14
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=95.35 E-value=0.044 Score=36.56 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccC----------CCCCCeEEEecCCCeeeeeEec
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTA--LHDLSL----------RPQGAKMLVPLTASLYVPGTLD 79 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~a--l~~l~~----------~~~~~eiLVPLt~slyV~gkl~ 79 (94)
.++|.+..+.+++.+..+..++..++.+..-+..-... .+.+=| -.+...|+|+||++.||-=.+.
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~ 85 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAE 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHH
Confidence 35666666777777777777777777665444222211 111111 1234678888888888865443
No 15
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=94.72 E-value=0.11 Score=34.42 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeee
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVP 75 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~ 75 (94)
++++..-.++++++++.+..+++.|.....+...+++.|+.+. ++..++-++|. +||+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~---~d~~vyk~VG~-vlv~ 62 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP---DDTPVYKSVGN-LLVK 62 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchhHHHhch-hhhe
Confidence 4666677788999999999999998877777666666666654 57789888887 5554
No 16
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.53 E-value=0.33 Score=33.01 Aligned_cols=66 Identities=27% Similarity=0.309 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccC----------CCCCCeEEEecCCCeeeeeEec
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST---ALHDLSL----------RPQGAKMLVPLTASLYVPGTLD 79 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~---al~~l~~----------~~~~~eiLVPLt~slyV~gkl~ 79 (94)
.+++.+..+.+.+++..|...+..++.+...+..-.. ..+.+-+ -.+...++|+||++.||.=.+.
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~ 93 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLD 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHH
Confidence 4566666677777777777777777766644432221 0011111 1234577888888888765544
No 17
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.72 Score=33.86 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=54.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCeEEEecCCCeeeeeEeccCCeeEEecCC
Q 034469 17 LKAIKEQTDLE---VNLLQDSLNNIRTATSRLESASTALHDLSLRP---QGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90 (94)
Q Consensus 17 L~~l~~ql~qe---i~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~---~~~eiLVPLt~slyV~gkl~d~~kVlVdIGt 90 (94)
|..+++++.+- -..+-+....|+.-+-.+..+.+.+..|...+ +.-+..+-|..++|.++.+.++++|-+=+|+
T Consensus 39 l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGA 118 (187)
T KOG3313|consen 39 LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGA 118 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecc
Confidence 44555444443 23445556666666677777777777776432 2358899999999999999999999999998
Q ss_pred Cc
Q 034469 91 EN 92 (94)
Q Consensus 91 Gy 92 (94)
..
T Consensus 119 nV 120 (187)
T KOG3313|consen 119 NV 120 (187)
T ss_pred ee
Confidence 63
No 18
>PRK14011 prefoldin subunit alpha; Provisional
Probab=93.92 E-value=0.19 Score=35.28 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCCCCeEEEecCCCeeeeeEec
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL----------RPQGAKMLVPLTASLYVPGTLD 79 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~----------~~~~~eiLVPLt~slyV~gkl~ 79 (94)
++++.+.-+.|.++++.|+.....+..++..+......-+-|=| -.+...+||++|++.||.=.+.
T Consensus 12 l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~ 87 (144)
T PRK14011 12 LEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVS 87 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHH
Confidence 56677777888888888888888888777665533221111211 1234678999999999865443
No 19
>PRK01203 prefoldin subunit alpha; Provisional
Probab=93.42 E-value=0.25 Score=34.32 Aligned_cols=66 Identities=14% Similarity=0.348 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccC-------CCCCCeEEEecCCCeeeeeEec
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS-----TALHDLSL-------RPQGAKMLVPLTASLYVPGTLD 79 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~-----~al~~l~~-------~~~~~eiLVPLt~slyV~gkl~ 79 (94)
++.+.+..+.|++|++.|+.....+..++..+.... +.|=-|.+ -.+...++|.+|+|.||.=.+.
T Consensus 9 ~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e 86 (130)
T PRK01203 9 LNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERE 86 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHH
Confidence 355667778899999999999999988776654421 11111111 1345689999999999975443
No 20
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=93.26 E-value=1.3 Score=28.00 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeee
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPG 76 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~g 76 (94)
+++..-.+.+.+++..+..++..|.....++..+.+.|+.+. ++..++..+|. +||+-
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~---~~~~~y~~vG~-~fv~~ 58 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLD---DDRKVYKSVGK-MFVKQ 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---TT-EEEEEETT-EEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHhH-HHHHh
Confidence 345556677888888888888888877776666666666654 45788888855 56653
No 21
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=92.92 E-value=0.29 Score=31.97 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeee
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVP 75 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~ 75 (94)
+++..-.++++++++.+..+++.|.....+...+.+.|..+. ++..++-++|. +||+
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~---~d~~vy~~VG~-vfv~ 58 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA---DDAEVYKLVGN-VLVK 58 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchHHHHhhh-HHhh
Confidence 456677789999999999999999888777777777777665 46677777776 4444
No 22
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=91.83 E-value=1.1 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNN 37 (94)
Q Consensus 7 i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~ 37 (94)
=||+.||+.+|..-...|++||..+.+.+..
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998888877755
No 23
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=89.88 E-value=1.9 Score=28.11 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccC----------CCCCCeEEEecCCCeeeeeEecc
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESAST---ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDD 80 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~---al~~l~~----------~~~~~eiLVPLt~slyV~gkl~d 80 (94)
+.++++++.|+..+..+..+...+..-.. ..+.+-| -.+...++|+||++.||.=.+.+
T Consensus 6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~e 77 (120)
T PF02996_consen 6 ENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEE 77 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHH
Confidence 45556666666666655555544333222 2222211 13457899999999999765543
No 24
>PRK09343 prefoldin subunit beta; Provisional
Probab=86.79 E-value=2.5 Score=28.53 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCC
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~ 70 (94)
+++..-.++++++++.+..+.+.|.....+...+.+-|+.| +++..|+-++|.
T Consensus 10 q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L---~~d~~VYk~VG~ 62 (121)
T PRK09343 10 QAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKL---PDDTPIYKIVGN 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCcchhHHHhhH
Confidence 44445557777777777777777776555555555555444 456677665553
No 25
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.17 E-value=5.4 Score=28.08 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=44.0
Q ss_pred CCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 034469 1 MASSKGGGMEK---MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR 58 (94)
Q Consensus 1 m~~~~~i~l~~---L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~ 58 (94)
||..+++..+- .+-+.+..-.++|.+|.+.|.+.+..|.+-..++.-.+++|+.+.+.
T Consensus 1 m~~a~~~~~~~~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~ 61 (140)
T KOG4098|consen 1 MAAAQSGSGTAKEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPT 61 (140)
T ss_pred CchhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChh
Confidence 55444443332 33356677779999999999999999999999999999999888653
No 26
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=85.58 E-value=1.7 Score=29.78 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeE
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~ei 64 (94)
++| +++.++-.++++=-+.++.-+.+.+...+.+.++..|++.|....++.+|
T Consensus 3 ~lp-p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~v 55 (119)
T COG1382 3 QLP-PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPV 55 (119)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 344 55555554444444444444555555556677777777777655555544
No 27
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=84.66 E-value=4.8 Score=28.52 Aligned_cols=51 Identities=8% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcc-CCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 43 SRLESASTALHDLS-LRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 43 ~~~~~~~~al~~l~-~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
++|..-+-+++.|. ...+..+.-+-||-..|+.-.+-|+.+|+|-+|-|+|
T Consensus 47 aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~ff 98 (157)
T KOG3047|consen 47 AEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFF 98 (157)
T ss_pred HHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeeccee
Confidence 45555555555543 2333456678899999999999999999999999987
No 28
>PF14282 FlxA: FlxA-like protein
Probab=84.37 E-value=4.5 Score=26.68 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
..+++++-....+.|+++|+.|+.+|.+|+.-+.+-
T Consensus 42 ~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 42 SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999988766543
No 29
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=82.73 E-value=4.3 Score=26.99 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
.-+||..|++++++|+.+-.+.|..|+..+
T Consensus 70 EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 70 EKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358999999999999999999998887654
No 30
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=82.64 E-value=8.8 Score=23.51 Aligned_cols=48 Identities=10% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Q 034469 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT-SRLESASTALHDLS 56 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~-~~~~~~~~al~~l~ 56 (94)
+.+.++.++..+.++|..++......++.+=... .+|..+-+.|..++
T Consensus 16 l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~ 64 (87)
T PF08700_consen 16 LKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSME 64 (87)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999988765433 56666666666654
No 31
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.58 E-value=10 Score=25.53 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 034469 43 SRLESASTALHD 54 (94)
Q Consensus 43 ~~~~~~~~al~~ 54 (94)
..++++..+++.
T Consensus 35 ~q~~e~~~~~~E 46 (121)
T PRK09343 35 LELREINKALEE 46 (121)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 32
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=76.78 E-value=28 Score=25.91 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEecc------CCeeEEe
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDD------ARKVLVD 87 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d------~~kVlVd 87 (94)
..++.+..++|++|+..|+.....++..+.+...-.+.|+- +... . --++++++.. .+.+++|
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~-~~~~---~-------~~~i~A~Vi~~~~~~~~~~i~Id 139 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL-KESL---D-------YQFITARVISRSPDPWSQQVTID 139 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccC---C-------CceEEEEEEEeCCCCceeEEEEc
Confidence 34555566677777777766666665555554443333322 1111 0 1345566543 3367888
Q ss_pred cCC
Q 034469 88 IGT 90 (94)
Q Consensus 88 IGt 90 (94)
.|+
T Consensus 140 ~G~ 142 (276)
T PRK13922 140 KGS 142 (276)
T ss_pred cCc
Confidence 875
No 33
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=74.46 E-value=13 Score=21.57 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 23 QTDLEVNLLQDSLNNIRTATSRLESA 48 (94)
Q Consensus 23 ql~qei~~l~~s~~~L~~a~~~~~~~ 48 (94)
.|.++++.|+.+++.|+.+-++|..+
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888777777664
No 34
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=73.69 E-value=34 Score=27.44 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSR 44 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~ 44 (94)
....++....+.++.+++.+......+.....+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (398)
T PTZ00454 15 HTERDLYEKLKELEKELEFLDIQEEYIKEEQKN 47 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455444445555555555555444444333
No 35
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=73.29 E-value=16 Score=21.28 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
.++++|....+++....+.|...++.|+.....+
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 4 VDPEQLRAAAQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899998888888888888888877655443
No 36
>PF01330 RuvA_N: RuvA N terminal domain; InterPro: IPR013849 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. This entry represents domain I of RuvA, which has an OB-fold structure. This domain forms the RuvA tetramer contacts [].; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJP_A 1D8L_B 1CUK_A 1C7Y_A 1IXR_B 2ZTC_A 2ZTD_B 2H5X_A 2ZTE_A 1BVS_E ....
Probab=71.21 E-value=4.9 Score=23.66 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=15.8
Q ss_pred eeeeeEec--cCCeeEEecC
Q 034469 72 LYVPGTLD--DARKVLVDIG 89 (94)
Q Consensus 72 lyV~gkl~--d~~kVlVdIG 89 (94)
.|++|++. +++.+++|+|
T Consensus 3 ~~l~G~v~~~~~~~vvi~~~ 22 (61)
T PF01330_consen 3 AYLKGKVVEKNPDYVVIDVN 22 (61)
T ss_dssp EEEEEEEEEEESSEEEEEET
T ss_pred cEEEEEEEEEcCCEEEEEEC
Confidence 48999996 5899999998
No 37
>KOG3448 consensus Predicted snRNP core protein [RNA processing and modification]
Probab=70.06 E-value=5.2 Score=26.40 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCeeeeeEeccCCeeE
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKVL 85 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kVl 85 (94)
-|+++-|-|-..+||+|++...|..|
T Consensus 11 vg~~V~VeLKnd~~i~GtL~svDqyL 36 (96)
T KOG3448|consen 11 VGKEVVVELKNDLSICGTLHSVDQYL 36 (96)
T ss_pred cCCeEEEEEcCCcEEEEEecccchhh
Confidence 37899999999999999999887653
No 38
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=67.41 E-value=24 Score=21.09 Aligned_cols=30 Identities=10% Similarity=0.313 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
++.++..+..++..++.-..++.++++.|+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 39
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=66.74 E-value=24 Score=20.73 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIK----EQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 9 l~~L~~~qL~~l~----~ql~qei~~l~~s~~~L~~ 40 (94)
+..+|.++|.+.- .+.++||+.|...++.=+.
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQRYQAKRQ 40 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 3467777776655 5666777777777766443
No 40
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=64.08 E-value=56 Score=24.97 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=7.4
Q ss_pred CCeeEEecCC
Q 034469 81 ARKVLVDIGT 90 (94)
Q Consensus 81 ~~kVlVdIGt 90 (94)
.+.+++|-|+
T Consensus 131 ~~~i~IdkGs 140 (283)
T TIGR00219 131 STQVVINKGF 140 (283)
T ss_pred ccEEEEcCcc
Confidence 4478888886
No 41
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.95 E-value=38 Score=27.06 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.4
Q ss_pred EeccCCeeEEecCCCc
Q 034469 77 TLDDARKVLVDIGTEN 92 (94)
Q Consensus 77 kl~d~~kVlVdIGtGy 92 (94)
|+...+|.+|||-.++
T Consensus 86 KvhpegKyvvdv~k~i 101 (404)
T KOG0728|consen 86 KVHPEGKYVVDVDKNI 101 (404)
T ss_pred EEcCCCcEEEeccCCC
Confidence 7778889999987654
No 42
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=62.40 E-value=14 Score=29.55 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=39.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (94)
Q Consensus 5 ~~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~ 50 (94)
+.+++-.++++|..+|..=++.++++.+++.+-|+.-+.+...-+.
T Consensus 195 sM~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r 240 (366)
T KOG1118|consen 195 SMFNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLFSRIR 240 (366)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4578889999999999999999999999999999988877655443
No 43
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=61.93 E-value=33 Score=20.71 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+...|..+...++..+..+.+.+...- ....+..+...+..|
T Consensus 25 ~~~~L~~l~~~~~~~~~~~~~~l~~~f-~~~d~~~A~~~~~kL 66 (78)
T PF07743_consen 25 DEAELEELKKEIEERIKELIKELAEAF-DAKDWEEAKEALRKL 66 (78)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHH
Confidence 347888888888888888888888766 566788888877665
No 44
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.83 E-value=35 Score=21.91 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIKEQTDLEVNL-------LQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~qei~~-------l~~s~~~L~~a~~~~~~~~~al 52 (94)
+=++.+++|.+-..++.+|++. |.+..++|+.-+..+.+-..+|
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777777777777776 5556666666666666666554
No 45
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.02 E-value=8.5 Score=24.46 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=26.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 7 i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
|.+-++.+++|.+-+++|.+|.+..+.+...|....
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~en 55 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALEREN 55 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888887777776665543
No 46
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=60.70 E-value=43 Score=26.20 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Q 034469 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLN----NIRTATSRLESASTALHDL 55 (94)
Q Consensus 8 ~l~~L~~~qL~~l~~ql~qei~~l~~s~~----~L~~a~~~~~~~~~al~~l 55 (94)
.+.+|+++||.++...|.++|+.....+. .=..-.+++.-=--||++|
T Consensus 215 eL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEKDsLaSElhVRHVaIEQL 266 (285)
T PF06937_consen 215 ELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQEKDSLASELHVRHVAIEQL 266 (285)
T ss_pred HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999885444443 3233334444444456654
No 47
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=60.08 E-value=23 Score=28.18 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=8.5
Q ss_pred EecCCCeeee
Q 034469 66 VPLTASLYVP 75 (94)
Q Consensus 66 VPLt~slyV~ 75 (94)
+||.+++||.
T Consensus 303 ~~la~~l~~~ 312 (406)
T PF02388_consen 303 IPLAGALFIY 312 (406)
T ss_dssp EEEEEEEEEE
T ss_pred ceEEEEEEEE
Confidence 8999998874
No 48
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=59.37 E-value=51 Score=22.07 Aligned_cols=50 Identities=6% Similarity=0.149 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCC
Q 034469 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~ 70 (94)
+.-+++.++.+.+++..|+.....+....+...............-|+..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~~ 130 (133)
T cd04787 81 RRLIEQRLAETERRIKELLKLRDRMQQAVSQWQQMPDGAPDGHSICHLIE 130 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcCchhh
Confidence 34456666667777777766666666555555443322222333344443
No 49
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=59.28 E-value=11 Score=22.89 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCeeeeeEec--cCCeeEEecCCCccC
Q 034469 69 TASLYVPGTLD--DARKVLVDIGTENDG 94 (94)
Q Consensus 69 t~slyV~gkl~--d~~kVlVdIGtGy~~ 94 (94)
..|-.|.|++. +.+.++||||.++.|
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g 32 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTA 32 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceE
Confidence 34566788887 588999999988654
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=59.05 E-value=33 Score=24.54 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
++.+|..+..+++++++.+...+...-.....+..|...+..|
T Consensus 115 d~~~L~~l~~e~~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL 157 (176)
T PRK03578 115 DVDALDALLAELRDERRERYAELGALLDSRGDDQAAAEAVRQL 157 (176)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 3455666666666666666665554433323456666665544
No 51
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=58.72 E-value=30 Score=24.33 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.++..+|....+.+...++.+.+++..++.+...|...-.+|+
T Consensus 2 ~~d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~Lk 44 (204)
T PF04740_consen 2 KLDVSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLK 44 (204)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 4678899999999999999999999999998888876654443
No 52
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=58.01 E-value=54 Score=22.23 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcc-CCCCCCeEEEecCCCeeee
Q 034469 17 LKAIKEQTDLEVNLLQDSLNN-----IRTATSRLESASTALHDLS-LRPQGAKMLVPLTASLYVP 75 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~-----L~~a~~~~~~~~~al~~l~-~~~~~~eiLVPLt~slyV~ 75 (94)
|..-+...+..++.+...+-. .-....+|+...-..-.-. .......=.|+||+|+||+
T Consensus 6 l~aA~~nv~a~L~~id~~~~~~tg~~~~~~~~e~~~~A~~~Aq~~~~~~~~~~gkV~lGGGl~m~ 70 (126)
T PF12757_consen 6 LAAAQRNVDARLQDIDEKVYAETGRVSLFMNEEWNRKALERAQANEEKRDENAGKVNLGGGLFMD 70 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhHhhcccCCCeeeCCCCcccC
Confidence 344556677777777776654 3334444443322222211 1122334479999999986
No 53
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=57.40 E-value=36 Score=21.45 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
+.+|.+-+++|+.++..|..+|-.+...-
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et~Y 32 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKETSY 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999998877543
No 54
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.92 E-value=52 Score=21.41 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
+++..+..+|++==+.++.-..++..-...+.++..+++.|+
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~ 44 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444455555555555555556666665553
No 55
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=56.91 E-value=18 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 034469 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQD 33 (94)
Q Consensus 5 ~~i~l~~L~~~qL~~l~~ql~qei~~l~~ 33 (94)
.-|+++.|+.++|.++++.++++...-..
T Consensus 88 ~li~iE~l~~~el~~~~~~~~~~~~~~~~ 116 (132)
T PF04120_consen 88 ELIDIEDLTEEELEEIRKRYERLAEQARE 116 (132)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHHHHhhh
Confidence 45999999999999999999887765433
No 56
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=56.44 E-value=95 Score=25.36 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
+.+|...+..|+-|.++++.... ++....+.....+-|+.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 101 (438)
T PTZ00361 60 LLKLERIKDYLLLEEEFITNQEA-QKPAQEKNEAELKKVDDLR 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhh
Confidence 34566666777777788776663 2334566667777777765
No 57
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=56.05 E-value=51 Score=21.03 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
|+++++..++..+-+..|.+.+..++.++.++.+
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~ 35 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRK 35 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777665543
No 58
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=56.00 E-value=66 Score=22.29 Aligned_cols=45 Identities=7% Similarity=0.114 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
-.|+++||.++.+.|..=++.-.......+....+-.++++.+..
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~ 63 (134)
T PRK10328 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLE 63 (134)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999888877776666665555555554444444443
No 59
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=55.65 E-value=57 Score=21.52 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
.++....+.++++++.+.+.+..|+.....+...+...
T Consensus 76 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 76 KQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666666666666665555544443
No 60
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.32 E-value=44 Score=19.75 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.++.+-.++++.+++.+++....|+.-..++....+.|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 445555566666666666666666666555533344444
No 61
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=53.98 E-value=72 Score=22.13 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
-.|+++||.++.+.|..=++.-..........+.+..+.++.+.
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r 62 (135)
T PRK10947 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 (135)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999998888877777766666655555555444443
No 62
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=53.95 E-value=42 Score=23.14 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
.-++|..+..|+..-++.++++.+++......+..+..+|
T Consensus 120 ~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~L 159 (160)
T PF13094_consen 120 CDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAAL 159 (160)
T ss_pred chHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999888888888777765
No 63
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=52.18 E-value=78 Score=24.48 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 034469 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT-SRLESASTALHD 54 (94)
Q Consensus 8 ~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~-~~~~~~~~al~~ 54 (94)
.++++++++|.....+|.+++..+..+++.|.... .-|.++.+++..
T Consensus 3 ~l~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~ 50 (338)
T PF04124_consen 3 ELTSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSD 50 (338)
T ss_pred ccccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999886543 223444444443
No 64
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=52.16 E-value=74 Score=21.78 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR 58 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~ 58 (94)
+++..-.++|+++++.+-.+-+++..-..+...+.+-|+.+...
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD 52 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDED 52 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 44556667888888888888888888888999999999988653
No 65
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=51.82 E-value=19 Score=22.99 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 034469 36 NNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 36 ~~L~~a~~~~~~~~~al~~l~ 56 (94)
+++..-..++.++++||+.+|
T Consensus 53 ~QideeV~~LKe~IdaLNK~K 73 (79)
T PF10398_consen 53 AQIDEEVEKLKEHIDALNKIK 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666666665
No 66
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=51.48 E-value=25 Score=21.96 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCeeeeeEeccCCee
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
.|+.|.|=|-.+..++|++...|..
T Consensus 10 ~g~~V~VeLKng~~~~G~L~~vD~~ 34 (81)
T cd01725 10 VGKEVTVELKNDLSIRGTLHSVDQY 34 (81)
T ss_pred CCCEEEEEECCCcEEEEEEEEECCC
Confidence 4889999999999999999887653
No 67
>PF10512 Borealin: Cell division cycle-associated protein 8 ; InterPro: IPR018867 The chromosomal passenger complex of Aurora B kinase, INCENP, and Survivin has essential regulatory roles at centromeres and the central spindle in mitosis. Cell division cycle-associated protein 8, also known as Borealin, is also a member of the complex. Approximately half of Aurora B in mitotic cells is complexed with INCENP, Borealin, and Survivin. Depletion of Borealin by RNA interference delays mitotic progression and results in kinetochore-spindle mis-attachments and an increase in bipolar spindles associated with ectopic asters []. ; PDB: 2KDD_A.
Probab=50.83 E-value=27 Score=23.61 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=26.4
Q ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 3 SSKGGGM--EKMSVEQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 3 ~~~~i~l--~~L~~~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
.++.+.+ ++++...|.+|...--++|+.|+.+++.+-
T Consensus 74 ~G~~~~l~~~dl~~~~l~~Ld~~tl~~ik~L~~~L~~i~ 112 (116)
T PF10512_consen 74 NGKPIRLLASDLDREDLEQLDPETLNQIKTLQANLQKIC 112 (116)
T ss_dssp SSS---EETTT--HHHHHTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEcchhhcCHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4567777 889999999999999999999999988763
No 68
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=50.01 E-value=50 Score=23.63 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+..|..++.++.+..+.+.+.+...-.+...+..|++++..|
T Consensus 113 ~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~A~~~v~kl 154 (173)
T PRK00294 113 LAGVATFKRRLKAAQDELNESFAACWDDAARREEAERLMRRM 154 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 344455555555555555555554333333356666666554
No 69
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.97 E-value=63 Score=23.46 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~ 46 (94)
....++.++.||..+...++.|..++.+..
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k 147 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRLEEIQSKSK 147 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777777776666665543
No 70
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=49.66 E-value=48 Score=18.88 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~ 46 (94)
.+++|.++-=.|+.||..-++|+..+...+..|+
T Consensus 5 ~ieelkqll~rle~eirett~sl~ninksidq~d 38 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNINKSIDQYD 38 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 4677777777888888888888877665554443
No 71
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=49.59 E-value=1e+02 Score=22.61 Aligned_cols=9 Identities=0% Similarity=0.132 Sum_probs=3.6
Q ss_pred CCHHHHHHH
Q 034469 12 MSVEQLKAI 20 (94)
Q Consensus 12 L~~~qL~~l 20 (94)
|+-+++...
T Consensus 57 l~~~~~~~~ 65 (322)
T TIGR01730 57 LDDDDYQLA 65 (322)
T ss_pred ECCHHHHHH
Confidence 333444333
No 72
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=49.51 E-value=58 Score=20.02 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=27.2
Q ss_pred HHHHhccCCCCCCeEEEecCCCeeeeeEecc--CCeeEEecCC
Q 034469 50 TALHDLSLRPQGAKMLVPLTASLYVPGTLDD--ARKVLVDIGT 90 (94)
Q Consensus 50 ~al~~l~~~~~~~eiLVPLt~slyV~gkl~d--~~kVlVdIGt 90 (94)
++|..+. |+.+-|-=+.+.+ +|++.| +|+++++.+.
T Consensus 14 q~lq~li----G~~vvV~T~~g~v-~G~L~~V~pDhIvl~~~~ 51 (66)
T PF10842_consen 14 QTLQSLI----GQRVVVQTTRGSV-RGILVDVKPDHIVLEENG 51 (66)
T ss_pred HHHHHhc----CCEEEEEEcCCcE-EEEEEeecCCEEEEEeCC
Confidence 3445544 7788777777776 999986 9999999874
No 73
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=48.76 E-value=76 Score=20.92 Aligned_cols=29 Identities=7% Similarity=0.158 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 26 LEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 26 qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
..++.+.+.++.|..-+.++....+.|+.
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666655555555555554
No 74
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.56 E-value=72 Score=20.54 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 14 VEQLKAIKEQTDLEVNL---LQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~---l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
+.+|.+..+.++..++. +.+++..|..+..++++-...|+.
T Consensus 51 ~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~ 94 (99)
T PF10046_consen 51 LEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444444333 333666666666666665555553
No 75
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.42 E-value=52 Score=22.80 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L 38 (94)
.++..++..++..+..|
T Consensus 89 ~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 89 AELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 76
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.35 E-value=94 Score=21.83 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
.+|+.-+.+|.+|++.|...+..+..-..-|..-.+++-.+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777777888888888888887777666666655655543
No 77
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.85 E-value=95 Score=22.38 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 28 VNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 28 i~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
++.+...+..++.+.+++.+.+.+|..+
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~~ 164 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKSY 164 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455555556666777788888877763
No 78
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=47.83 E-value=14 Score=24.36 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=19.9
Q ss_pred cCCCeeeeeEecc-CCeeEEecCCCc
Q 034469 68 LTASLYVPGTLDD-ARKVLVDIGTEN 92 (94)
Q Consensus 68 Lt~slyV~gkl~d-~~kVlVdIGtGy 92 (94)
=++.+||++++.. +-++|||=|+.+
T Consensus 13 ~~~~~~v~~~Ing~~~~~LvDTGAs~ 38 (124)
T cd05479 13 KVPMLYINVEINGVPVKAFVDSGAQM 38 (124)
T ss_pred eeeEEEEEEEECCEEEEEEEeCCCce
Confidence 4567899999865 568999999875
No 79
>PF10148 SCHIP-1: Schwannomin-interacting protein 1; InterPro: IPR015649 SCHIP-1 is a coiled-coil protein that specifically associates with schwannomin in vitro and in vivo. The product of the neurofibromatosis type 2 (NF2) tumour suppressor gene, known as schwannomin or merlin, is involved in NF2-associated and sporadic schwannomas and meningiomas. It is closely related to the ezrin-radixin-moesin family members, which link membrane proteins to the cytoskeleton. Association with SCHIP-1 can be observed only with some naturally occurring mutants of schwannomin, or a schwannomin spliced isoform lacking exons 2 and 3, but not with the schwannomin isoform exhibiting growth-suppressive activity []. This entry consists of mammalian SCHIP-1 proteins from Mus musculus (Mouse) and Homo sapiens (Human).
Probab=47.82 E-value=47 Score=25.37 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATS 43 (94)
Q Consensus 7 i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~ 43 (94)
..++.++++||+-+.+.|+..|+.++..+-.+-..+-
T Consensus 168 ~~L~~~~~~qLq~i~~~l~~~i~~ln~~Lv~~L~~RD 204 (238)
T PF10148_consen 168 QDLTKMNVPQLQVIVNDLHEQIEALNEELVQLLLERD 204 (238)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999877665553
No 80
>PRK09795 aminopeptidase; Provisional
Probab=47.60 E-value=1.1e+02 Score=23.63 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=20.3
Q ss_pred eEEEecCCCeeee------eEeccCCeeEEecCCCcc
Q 034469 63 KMLVPLTASLYVP------GTLDDARKVLVDIGTEND 93 (94)
Q Consensus 63 eiLVPLt~slyV~------gkl~d~~kVlVdIGtGy~ 93 (94)
+..|.-|.....| -++.+.|-|++|+|+-|.
T Consensus 182 ~~iv~sG~~~~~ph~~~~~~~l~~gd~v~~d~g~~~~ 218 (361)
T PRK09795 182 DTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQ 218 (361)
T ss_pred CeEEEEeccccccCCCCCCceecCCCEEEEEeccccC
Confidence 3456555443333 357788999999998664
No 81
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.57 E-value=73 Score=20.37 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTAT----SRLESASTALHD 54 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~----~~~~~~~~al~~ 54 (94)
+.|..-+.+|.++++........|+.+. .++..++++|..
T Consensus 42 ~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 42 QRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888888888887766 445566666654
No 82
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=47.36 E-value=61 Score=22.90 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
.++|..++.+++++++.+..++...-.+ ..+..|+..+..|
T Consensus 108 ~~~L~~l~~~~~~~~~~~~~~l~~~f~~-~d~~~A~~~~~~L 148 (166)
T PRK01356 108 FSDLEKIKNKYELMYKNEIDSLKQAFEE-QNLSDATIKTSKL 148 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 3445555555555555555555543322 2455555555543
No 83
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=46.89 E-value=84 Score=23.86 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
++.++...+..|.+....|....++|+.+..+-+.+..+|+.
T Consensus 94 s~~D~~~rRd~L~~a~~~l~~~~~qlq~ak~~AD~a~a~LKQ 135 (229)
T PF11254_consen 94 SPQDYLERRDALRQARGALNDLAQQLQNAKAQADAARAALKQ 135 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcC
Confidence 678889999999999999999999999999999999999985
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.73 E-value=85 Score=20.59 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
...++.+...++++|++.+++.-..|+.-+.++.+..+.++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 345566666667777777777777777777666654455553
No 85
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.65 E-value=67 Score=28.18 Aligned_cols=30 Identities=7% Similarity=0.353 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTA 41 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a 41 (94)
+.+.||+.-+|.|+.||+.+++-++.|+..
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666777777777777777777766653
No 86
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=45.56 E-value=77 Score=20.07 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 11 KMSVEQLKAIKEQT-DLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 11 ~L~~~qL~~l~~ql-~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
.+|+.++..+-+.. ..-.+.+......|..-+.++..+.+.|+.
T Consensus 57 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 57 GFSLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665554 444566666667777666666666666653
No 87
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.24 E-value=1.4e+02 Score=22.94 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh----ccC-----CCCCCeEEEecCCCeeeeeE
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLE----SASTALHD----LSL-----RPQGAKMLVPLTASLYVPGT 77 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~----~~~~al~~----l~~-----~~~~~eiLVPLt~slyV~gk 77 (94)
.|....++++++.+.|++.+..++.....+. +...++++ |+. .-.|.=+.|-|+..-|.+..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~~~ 128 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSPNG 128 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCccc
Confidence 4444455555555555555555555555544 33333333 221 22345577777777777766
No 88
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=44.75 E-value=52 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~ 50 (94)
.++..++..+++++.-++.++..|......|-++..
T Consensus 28 ~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r 63 (149)
T PF07352_consen 28 DEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANR 63 (149)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 456667777777777777777777777777765533
No 89
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=44.26 E-value=23 Score=20.65 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=16.2
Q ss_pred eeeeEec--cCCeeEEecCCCccC
Q 034469 73 YVPGTLD--DARKVLVDIGTENDG 94 (94)
Q Consensus 73 yV~gkl~--d~~kVlVdIGtGy~~ 94 (94)
-+.|++. ++..+.|++|.|+.|
T Consensus 7 iv~g~V~~v~~~g~~V~l~~~~~g 30 (74)
T PF00575_consen 7 IVEGKVTSVEDFGVFVDLGNGIEG 30 (74)
T ss_dssp EEEEEEEEEETTEEEEEESTSSEE
T ss_pred EEEEEEEEEECCEEEEEECCcEEE
Confidence 3567775 478999999987653
No 90
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.20 E-value=76 Score=20.98 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (94)
Q Consensus 8 ~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~ 46 (94)
.+.+|.++=|...++.|..+++.+.+.++.+.....++.
T Consensus 62 rLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~ 100 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLK 100 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666665555444443
No 91
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=43.19 E-value=54 Score=28.48 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
.||.+|++|-++|++.+..+.+.++...
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~ 31 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESH 31 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777777766665543
No 92
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=43.04 E-value=90 Score=27.29 Aligned_cols=42 Identities=2% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 6 GGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 6 ~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
+--+..|++....+++++....+...++.|+.++...+|-.+
T Consensus 351 ~~~~gkLdp~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~ 392 (669)
T PF08549_consen 351 KPYVGKLDPGKAEEFRKRVAKKIADMNAEIEKMKARHAKRMA 392 (669)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999886655433
No 93
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.68 E-value=48 Score=30.22 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 6 GGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS 49 (94)
Q Consensus 6 ~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~ 49 (94)
.||++.++.+....-.++|+++++.+...++.+........+..
T Consensus 587 ~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l 630 (1201)
T PF12128_consen 587 SLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQL 630 (1201)
T ss_pred EeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888887777777888888888887777665554444443
No 94
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=42.47 E-value=69 Score=23.48 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSL 35 (94)
Q Consensus 22 ~ql~qei~~l~~s~ 35 (94)
..++.+++.++..+
T Consensus 203 ~~~~~~i~~~~~rl 216 (239)
T PF07195_consen 203 KSLDKQIEDLEERL 216 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 95
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=42.17 E-value=27 Score=30.70 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.8
Q ss_pred CeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 62 ~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
.=+.|-+|--=||+|....+.-|+||+|.+|-
T Consensus 207 DIvIvAiG~PefVKgdWiKpGavVIDvGINyv 238 (935)
T KOG4230|consen 207 DIVIVAIGQPEFVKGDWIKPGAVVIDVGINYV 238 (935)
T ss_pred CEEEEEcCCcceeecccccCCcEEEEcccccc
Confidence 45678899999999999999999999999984
No 96
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=41.83 E-value=1.2e+02 Score=24.78 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
|+..+.++++..-+.|..+|.+|..+.++++.--.-|..
T Consensus 421 ~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~ 459 (462)
T PRK08032 421 QYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQ 459 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566677777777777777665555543
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.79 E-value=1.5e+02 Score=22.95 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=7.0
Q ss_pred CCCCCHHHHHHHH
Q 034469 9 MEKMSVEQLKAIK 21 (94)
Q Consensus 9 l~~L~~~qL~~l~ 21 (94)
++..++.+|.+++
T Consensus 203 ~~~~D~~eL~~lr 215 (325)
T PF08317_consen 203 IESCDQEELEALR 215 (325)
T ss_pred hhhcCHHHHHHHH
Confidence 4445555555555
No 98
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=41.71 E-value=32 Score=21.45 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCeeeeeEeccCCee
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
.|+.|.|=|-.+..+.|++...|..
T Consensus 18 ~g~~V~VeLKng~~~~G~L~~vD~~ 42 (78)
T cd01733 18 QGKVVTVELRNETTVTGRIASVDAF 42 (78)
T ss_pred CCCEEEEEECCCCEEEEEEEEEcCC
Confidence 4889999999999999999887753
No 99
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.67 E-value=43 Score=29.09 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+.+.+-+++||.|+..|+..+..-+.....+..-...+..+
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888877776666666655555554
No 100
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.63 E-value=92 Score=19.79 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 034469 7 GGMEKMSVEQLKAIKEQTDLEVNLLQD 33 (94)
Q Consensus 7 i~l~~L~~~qL~~l~~ql~qei~~l~~ 33 (94)
=||+.|++++|..|-++|+.=+..+..
T Consensus 41 edL~~Ls~~eL~~LE~~Le~aL~~VR~ 67 (100)
T PF01486_consen 41 EDLESLSLKELQQLEQQLESALKRVRS 67 (100)
T ss_pred ccccccchHHHHHHHHhhhhhHHHHHH
Confidence 378999999999999888875554443
No 101
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.36 E-value=1.3e+02 Score=23.96 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTA 51 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~a 51 (94)
++++-|-+-.+-|.+++..++.....++.+++||..+.++
T Consensus 189 vDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 189 VDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999988876
No 102
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.30 E-value=1.1e+02 Score=20.70 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
.-++.|.+..++++.|+..++..+..|...+...
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l 49 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDEL 49 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888889998888888887665444
No 103
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=41.28 E-value=30 Score=27.77 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=17.8
Q ss_pred cCCCeeeeeEeccCCeeEEecCCCc
Q 034469 68 LTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 68 Lt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
+|++++|. .....++||||.|-
T Consensus 143 IGaglpi~---ep~G~mvvDIGgGT 164 (342)
T COG1077 143 IGAGLPIM---EPTGSMVVDIGGGT 164 (342)
T ss_pred hcCCCccc---CCCCCEEEEeCCCc
Confidence 88888875 34569999999984
No 104
>PRK12897 methionine aminopeptidase; Reviewed
Probab=40.99 E-value=1.1e+02 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.2
Q ss_pred EeccCCeeEEecCCCcc
Q 034469 77 TLDDARKVLVDIGTEND 93 (94)
Q Consensus 77 kl~d~~kVlVdIGtGy~ 93 (94)
.+.+.|-|+||+|+.|.
T Consensus 84 ~l~~Gd~V~iD~g~~~~ 100 (248)
T PRK12897 84 PLTEGDIVTIDMVVNLN 100 (248)
T ss_pred ccCCCCEEEEEeeEEEC
Confidence 57888999999998664
No 105
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=40.57 E-value=1.4e+02 Score=24.02 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeE
Q 034469 24 TDLEVNLLQDSLNNIRT-----ATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL 85 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~-----a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVl 85 (94)
+-+++..+...+...+. ...+...-++.|+.++...-..++-+|+..++.|.|-+.+.-+|+
T Consensus 10 ~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lPl~P~~~~~~i~~~~~~v~ 76 (365)
T cd00894 10 VIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLPESFRVPYDPGLRAGALVIEKCKVM 76 (365)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhccCCCCCCCCCCCceEEEEEEcCceEEE
Confidence 34455555555555432 112222334445555432234578999999999999887766654
No 106
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=40.55 E-value=82 Score=18.96 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
..|++.|..|+..|..++.++.+-.....|=+.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999988877666665444
No 107
>PRK15396 murein lipoprotein; Provisional
Probab=40.32 E-value=96 Score=19.64 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
+++|..-.+.|..+++.+..-.+.++.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554
No 108
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=40.30 E-value=1.3e+02 Score=21.15 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
|+.--..-+.++++||+.|+..|..|+....-+
T Consensus 100 d~~aWk~hr~~ID~eIe~Lq~Ki~~LKeiR~hL 132 (145)
T PF12548_consen 100 DPKAWKDHRLHIDHEIETLQDKIKNLKEIRGHL 132 (145)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667899999999999999988766444
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=39.90 E-value=45 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
|....+++++++..++..+..++.-..++.+-++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666555555555544444443
No 110
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.08 E-value=1.3e+02 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTA 41 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a 41 (94)
.++.++|...+.++++++.....++..|+.-
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e 49 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEE 49 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888777555555555543
No 111
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=38.82 E-value=31 Score=28.17 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.4
Q ss_pred CCeeEEecCCC
Q 034469 81 ARKVLVDIGTE 91 (94)
Q Consensus 81 ~~kVlVdIGtG 91 (94)
.++|++|||+|
T Consensus 186 ~~~vVldVGAG 196 (448)
T PF05185_consen 186 KDKVVLDVGAG 196 (448)
T ss_dssp TT-EEEEES-T
T ss_pred cceEEEEeCCC
Confidence 88999999998
No 112
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=38.80 E-value=80 Score=18.27 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~ 46 (94)
|.+.+...++-++.+.++|..|+.-+.++.
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888888876655543
No 113
>PRK04654 sec-independent translocase; Provisional
Probab=38.01 E-value=1.7e+02 Score=22.07 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCCCCCeEEEec
Q 034469 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS-----LRPQGAKMLVPL 68 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~-----~~~~~~eiLVPL 68 (94)
++.++..-..++..-.+|+..+.+...+.++++... -..+...|..||
T Consensus 60 rk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~~~~~~~~~~~~~~~~~pl 112 (214)
T PRK04654 60 KRSLQDVQASLREAEDQLRNTQQQVEQGARALHDDVSRDIDIRTSATPVATPL 112 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Confidence 333333333444444556667777777777776321 122345677777
No 114
>PHA02666 hypothetical protein; Provisional
Probab=37.54 E-value=90 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
.||.+|.+.|+.|++++...|+.-+.-.
T Consensus 219 tQLSALEKSLESElnFYrrYIqDTKsLL 246 (287)
T PHA02666 219 TQLSALEKSLESELNFYRRYIQDTKSLL 246 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6899999999999999999998755443
No 115
>PRK10879 proline aminopeptidase P II; Provisional
Probab=37.54 E-value=1.3e+02 Score=24.17 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.5
Q ss_pred eEeccCCeeEEecCCCcc
Q 034469 76 GTLDDARKVLVDIGTEND 93 (94)
Q Consensus 76 gkl~d~~kVlVdIGtGy~ 93 (94)
.++.+.|-|++|+|+-|.
T Consensus 247 ~~l~~GDlVliD~G~~~~ 264 (438)
T PRK10879 247 SEMRDGDLVLIDAGCEYK 264 (438)
T ss_pred cccCCCCEEEEEeCeEEC
Confidence 357788999999998664
No 116
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=36.96 E-value=1.6e+02 Score=23.51 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
++...-++-|+-+..++..|..|..|...+..++.+|+.|
T Consensus 75 ~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL 114 (383)
T PF04100_consen 75 EIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRL 114 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446677778888889999999998888888888866
No 117
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=36.85 E-value=48 Score=19.82 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCeEEEecCCCeeeeeEeccCCee
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
.|+++.|=|..+..+.|++..-|..
T Consensus 10 ~g~~V~V~Lk~g~~~~G~L~~~D~~ 34 (68)
T cd01722 10 TGKPVIVKLKWGMEYKGTLVSVDSY 34 (68)
T ss_pred CCCEEEEEECCCcEEEEEEEEECCC
Confidence 3789999999999999999876653
No 118
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=36.76 E-value=1e+02 Score=18.95 Aligned_cols=31 Identities=13% Similarity=0.334 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 23 QTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 23 ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.|++.|-.|+..|..|+.-..+-..+..|-+
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAe 59 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAE 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 4455555555656655555554444444433
No 119
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=36.72 E-value=39 Score=20.69 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCeeeeeEeccCCee
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
.|++|.|=|-.+..+.|++...|..
T Consensus 10 ~g~~V~VeLkng~~~~G~L~~~D~~ 34 (76)
T cd01723 10 QNHPMLVELKNGETYNGHLVNCDNW 34 (76)
T ss_pred CCCEEEEEECCCCEEEEEEEEEcCC
Confidence 4899999999999999999876653
No 120
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.68 E-value=1.1e+02 Score=19.12 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 27 EVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 27 ei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
....|..+...+.....+...+++-++.
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666665555
No 121
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=36.36 E-value=1.1e+02 Score=19.15 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
+.=+-..|..+-+.|+-|+.+++-.++.|.......
T Consensus 8 s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~ 43 (79)
T PF06657_consen 8 SQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQM 43 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333457789999999999999999999886544333
No 122
>PRK13607 proline dipeptidase; Provisional
Probab=36.30 E-value=2.3e+02 Score=22.94 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=11.7
Q ss_pred eccCCeeEEecCCCc
Q 034469 78 LDDARKVLVDIGTEN 92 (94)
Q Consensus 78 l~d~~kVlVdIGtGy 92 (94)
+.+-+-|++|+|+-|
T Consensus 237 ~~~Gd~vliD~Ga~~ 251 (443)
T PRK13607 237 PAEMRSFLIDAGAEY 251 (443)
T ss_pred CCCCCEEEEEeeEEE
Confidence 567788999999644
No 123
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.21 E-value=1.8e+02 Score=27.64 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=36.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 7 i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
-.+..|+.++|.....++++.++.++..+..++.-..+...+.+.+.
T Consensus 430 ~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999988888887765555555554444
No 124
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=36.15 E-value=44 Score=19.25 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=14.5
Q ss_pred eeeeEecc--CCeeEEecCCCcc
Q 034469 73 YVPGTLDD--ARKVLVDIGTEND 93 (94)
Q Consensus 73 yV~gkl~d--~~kVlVdIGtGy~ 93 (94)
.|.|++.. .+.++|++|.++.
T Consensus 3 iv~g~V~~i~~~~~~v~l~~~~~ 25 (70)
T cd05687 3 IVKGTVVSVDDDEVLVDIGYKSE 25 (70)
T ss_pred EEEEEEEEEeCCEEEEEeCCCce
Confidence 45677754 5678899987653
No 125
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.07 E-value=1.4e+02 Score=24.27 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
..|...++.|++|+.-|+.++.-|+
T Consensus 249 ~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 249 QKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444444555555555555555544
No 126
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=36.06 E-value=1e+02 Score=22.58 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNN 37 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~ 37 (94)
..+||..|++.+-+|++.|..+++.
T Consensus 146 EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 146 EAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999988865
No 127
>PRK06798 fliD flagellar capping protein; Validated
Probab=35.83 E-value=1.7e+02 Score=23.87 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
++..+..++++.-+.|..+|.+|..+.++++.--..|..+-
T Consensus 394 ~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~ 434 (440)
T PRK06798 394 KITDIDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAMT 434 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555556788888888888888888777777653
No 128
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=35.74 E-value=1.4e+02 Score=25.22 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcc
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES----ASTALHDLS 56 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~----~~~al~~l~ 56 (94)
+..++..|..+++..++.+.+++..|+.-...+.+ ...||+-|-
T Consensus 422 ~~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~ 469 (561)
T PF00429_consen 422 STQQYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLT 469 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 46899999999999999999999988876665544 345666554
No 129
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=35.37 E-value=1.4e+02 Score=20.02 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
.++...-..+...++.|+.+++.|+.
T Consensus 68 ~~~~~~l~~v~~~v~~L~~s~~RL~~ 93 (132)
T PF10392_consen 68 EELESVLQAVRSSVESLQSSYERLRS 93 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666777777776664
No 130
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=35.33 E-value=37 Score=26.48 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=26.8
Q ss_pred eEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 63 KMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 63 eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
=+.+-+|.--|+++....+..|++|+|..|-
T Consensus 202 Ivv~AvG~p~~i~~d~vk~gavVIDVGinrv 232 (283)
T COG0190 202 IVVVAVGKPHFIKADMVKPGAVVIDVGINRV 232 (283)
T ss_pred EEEEecCCccccccccccCCCEEEecCCccc
Confidence 3557788889999999999999999999863
No 131
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.98 E-value=77 Score=23.47 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
|+++|++.-.+.|..|+......+..++.
T Consensus 116 Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 116 LTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 132
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.79 E-value=90 Score=17.70 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034469 19 AIKEQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 19 ~l~~ql~qei~~l~~s~~~L 38 (94)
.-...|+.+...|.+.+..|
T Consensus 32 ~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 133
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=34.56 E-value=54 Score=18.04 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTA 41 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a 41 (94)
-++|..++.|+.++..|..+
T Consensus 18 ~R~E~kld~L~~~i~~L~~~ 37 (38)
T PF12841_consen 18 VRIEKKLDELTESINELSEA 37 (38)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777654
No 134
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.47 E-value=1.3e+02 Score=19.50 Aligned_cols=32 Identities=9% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.-++++.+.+.+.+..|+...+.+......++
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 82 QALEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666666655555444443
No 135
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=34.45 E-value=30 Score=23.38 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.8
Q ss_pred eccCCeeEEecCCC
Q 034469 78 LDDARKVLVDIGTE 91 (94)
Q Consensus 78 l~d~~kVlVdIGtG 91 (94)
+.+..++.||.|||
T Consensus 75 fkngkh~~~d~gt~ 88 (114)
T cd02986 75 FFNGQHMKVDYGSP 88 (114)
T ss_pred EECCcEEEEecCCC
Confidence 35677999999998
No 136
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=34.26 E-value=1.3e+02 Score=19.32 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 6 GGGMEKMSVEQLKAIK--EQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 6 ~i~l~~L~~~qL~~l~--~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
.+....++|+++..-+ ..+..+.+.|..-++.++.-...+.+.+.+.
T Consensus 58 ~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 58 PVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999987654 7788888888888888887766666555443
No 137
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.16 E-value=1.1e+02 Score=18.37 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
.+|..--++|..+++.|+.-+..|+
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.11 E-value=1.8e+02 Score=22.72 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=10.8
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIKEQTDL 26 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~q 26 (94)
+.+.++.+|..++.++..
T Consensus 198 ~~~~d~~eL~~lk~~l~~ 215 (312)
T smart00787 198 LEDCDPTELDRAKEKLKK 215 (312)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 445667777777755443
No 139
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.03 E-value=1.9e+02 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
.+++-.++|.+|++.+++.+...+
T Consensus 61 s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 61 SLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554
No 140
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=33.93 E-value=1.4e+02 Score=23.23 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHhccCCCC
Q 034469 9 MEKMSVEQLKAIKEQTDLEVNLLQDSL----------------------------NNIRTATSRLESASTALHDLSLRPQ 60 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~qei~~l~~s~----------------------------~~L~~a~~~~~~~~~al~~l~~~~~ 60 (94)
|..|+..++....++.+.++...+.++ ..++.+++++..+...++..+..-.
T Consensus 91 La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~ 170 (385)
T PRK09578 91 LFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLD 170 (385)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred CCeEEEecCC
Q 034469 61 GAKMLVPLTA 70 (94)
Q Consensus 61 ~~eiLVPLt~ 70 (94)
..++.-|..+
T Consensus 171 ~~~I~AP~dG 180 (385)
T PRK09578 171 YATVTAPIDG 180 (385)
T ss_pred CCEEECCCCe
No 141
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=33.92 E-value=27 Score=29.13 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCe-----------EEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 42 TSRLESASTALHDLSLRPQGAK-----------MLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 42 ~~~~~~~~~al~~l~~~~~~~e-----------iLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
.++...+.++++.+...- |.- ++-|++++..+--+=.+.--.+||||+|-
T Consensus 97 ~~~~~Nl~~~v~~~~~~~-gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGT 157 (475)
T PRK10719 97 TARKENAREVVMALSGSA-GDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGT 157 (475)
T ss_pred hhHHHHHHHHHHHhcccc-cceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCc
Confidence 355566666666533111 222 25699988888755345566789999985
No 142
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.55 E-value=1.5e+02 Score=21.61 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+.|.++++|.+.++....+++..=-.+. +|.+|...+..+
T Consensus 115 ~~l~~lk~q~q~ri~q~~~qlge~~esk-~~~~Al~~i~rl 154 (168)
T KOG3192|consen 115 EDLKQLKSQNQERIAQCKQQLGEAFESK-KYDEALKKILRL 154 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 3477888888888877777776654444 488887777665
No 143
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=33.33 E-value=1.5e+02 Score=19.81 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~ 57 (94)
+...+.++++.++.+......|.....++..+.....-++.
T Consensus 46 ~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~a 86 (171)
T PF03357_consen 46 YLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKA 86 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777888888888888888888888777766555443
No 144
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=33.25 E-value=2.2e+02 Score=21.78 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=7.5
Q ss_pred CCeeEEecCC
Q 034469 81 ARKVLVDIGT 90 (94)
Q Consensus 81 ~~kVlVdIGt 90 (94)
.+++++|.|+
T Consensus 131 ~~~ivId~Gs 140 (284)
T COG1792 131 SQTIVIDKGS 140 (284)
T ss_pred hcEEEEecCc
Confidence 4678888886
No 145
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=33.20 E-value=2.1e+02 Score=21.78 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~ 50 (94)
=+++++..+..=++.++++..++++.|+..+.++...++
T Consensus 193 ~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 193 KEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777888888888888888877777666543
No 146
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.01 E-value=2.2e+02 Score=21.71 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=4.1
Q ss_pred CeEEEecCC
Q 034469 62 AKMLVPLTA 70 (94)
Q Consensus 62 ~eiLVPLt~ 70 (94)
..|.-|+.+
T Consensus 272 ~~i~AP~dG 280 (423)
T TIGR01843 272 LIIRSPVDG 280 (423)
T ss_pred cEEECCCCc
Confidence 344444444
No 147
>PRK14127 cell division protein GpsB; Provisional
Probab=32.98 E-value=1.5e+02 Score=19.83 Aligned_cols=44 Identities=9% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.-.++++.-++-.++-++.+.|...+..|+....++.+..+.++
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555555555544444444443
No 148
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=32.70 E-value=56 Score=19.77 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=16.9
Q ss_pred CCeeeeeEecc--CCeeEEecC-CCcc
Q 034469 70 ASLYVPGTLDD--ARKVLVDIG-TEND 93 (94)
Q Consensus 70 ~slyV~gkl~d--~~kVlVdIG-tGy~ 93 (94)
.+.-|+|++++ +.-++||+| .|+.
T Consensus 4 ~G~~v~g~V~si~d~G~~v~~g~~gv~ 30 (74)
T cd05694 4 EGMVLSGCVSSVEDHGYILDIGIPGTT 30 (74)
T ss_pred CCCEEEEEEEEEeCCEEEEEeCCCCcE
Confidence 45567888875 667889998 4553
No 149
>PF13861 FLgD_tudor: FlgD Tudor-like domain; PDB: 3OSV_A 3C12_A.
Probab=32.63 E-value=1e+02 Score=17.80 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=24.1
Q ss_pred CCCCeEEE--ecCCCeeeeeEec----cCCeeEEecCCC
Q 034469 59 PQGAKMLV--PLTASLYVPGTLD----DARKVLVDIGTE 91 (94)
Q Consensus 59 ~~~~eiLV--PLt~slyV~gkl~----d~~kVlVdIGtG 91 (94)
--|+++++ +.+...|+.|++. +.....+++|.+
T Consensus 10 lIGk~V~~~~~~~~~~~~~g~V~sV~~~~g~~~L~l~~~ 48 (61)
T PF13861_consen 10 LIGKEVLVPKSVAATTLVSGRVESVTFSGGGPMLNLGGG 48 (61)
T ss_dssp TTTSEEEEEEEEEE-EEEEEEEEEEEEETTEEEEEETTT
T ss_pred hcCCEEEECCcEeeeeEEEEEEEEEEEcCCeEEEEEecC
Confidence 34889999 6778888888885 467788888543
No 150
>PRK14575 putative peptidase; Provisional
Probab=32.53 E-value=1.4e+02 Score=23.61 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=13.4
Q ss_pred EeccCCeeEEecCCCcc
Q 034469 77 TLDDARKVLVDIGTEND 93 (94)
Q Consensus 77 kl~d~~kVlVdIGtGy~ 93 (94)
++.+.|-|++|+|+.|.
T Consensus 252 ~l~~Gd~v~iD~g~~~~ 268 (406)
T PRK14575 252 KACSGDLIKFDCGVDVD 268 (406)
T ss_pred cCCCCCEEEEEeceEEC
Confidence 46678999999998554
No 151
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.50 E-value=1.7e+02 Score=24.92 Aligned_cols=39 Identities=8% Similarity=0.310 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
++|.--+..++.|+..+++.+..|..-.++-.+-|++|+
T Consensus 476 DEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 476 DELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666788888999999999988877777777777766
No 152
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=31.72 E-value=2.1e+02 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
+++..++..++++++.+...+..+..++...
T Consensus 119 ~~~~~l~~~l~~~l~~~~~~y~~~d~~q~dw 149 (332)
T TIGR01541 119 EQLAAIKAALNEALAELHAYYAAEDALQGDW 149 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4555666667777777777777776655444
No 153
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=31.65 E-value=1.5e+02 Score=19.28 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNN 37 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~ 37 (94)
++.+|+..+++.|.+....|...+..
T Consensus 1 M~~~~l~~~k~~L~~~~~~L~~~i~~ 26 (110)
T TIGR02420 1 MSEAQLEHFRKILLRWKQELLEEADK 26 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887666655544
No 154
>PHA03155 hypothetical protein; Provisional
Probab=31.57 E-value=1.5e+02 Score=20.33 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNN 37 (94)
Q Consensus 1 m~~~~~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~ 37 (94)
||+.++ .+++++|+.--++|+-|=..|...+.+
T Consensus 1 mas~~~----~~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 1 MASGRA----CADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 676663 789999999888888888888777743
No 155
>PRK14576 putative endopeptidase; Provisional
Probab=31.43 E-value=1.7e+02 Score=23.22 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEEecCCCeee-----eeEeccCCeeEEecCCCccC
Q 034469 64 MLVPLTASLYV-----PGTLDDARKVLVDIGTENDG 94 (94)
Q Consensus 64 iLVPLt~slyV-----~gkl~d~~kVlVdIGtGy~~ 94 (94)
.+|.-|..... ..++.+.|-|++|+|+.|.|
T Consensus 233 ~~v~~G~~~~~h~~~~~~~l~~Gd~v~~d~g~~~~G 268 (405)
T PRK14576 233 NLISVGDNFSPKIIADTTPAKVGDLIKFDCGIDVAG 268 (405)
T ss_pred CEEEECCcccCCCCCCCcccCCCCEEEEEeceeECC
Confidence 46666665221 13477889999999997754
No 156
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=31.29 E-value=35 Score=21.07 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=9.0
Q ss_pred CCeeEEecCCCc
Q 034469 81 ARKVLVDIGTEN 92 (94)
Q Consensus 81 ~~kVlVdIGtGy 92 (94)
+++.++|+|+|.
T Consensus 19 ~~~~vldlG~G~ 30 (124)
T TIGR02469 19 PGDVLWDIGAGS 30 (124)
T ss_pred CCCEEEEeCCCC
Confidence 345789999885
No 157
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=30.95 E-value=50 Score=20.73 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=17.5
Q ss_pred EEecCCCeeeeeEeccCCeeEEec
Q 034469 65 LVPLTASLYVPGTLDDARKVLVDI 88 (94)
Q Consensus 65 LVPLt~slyV~gkl~d~~kVlVdI 88 (94)
++| -.|+||-.+..|.+.|+|=+
T Consensus 5 f~P-~~gvYvYfR~~~~~tVmVil 27 (78)
T PF10438_consen 5 FAP-QDGVYVYFRYYDGKTVMVIL 27 (78)
T ss_dssp ----BTTEEEEEEEESSEEEEEEE
T ss_pred ECc-cCCEEEEEEEcCCCEEEEEE
Confidence 356 67899999999999998854
No 158
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=30.79 E-value=1.7e+02 Score=20.41 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
|..+...+++.+..+.+.+...-. ...+..|...+..
T Consensus 102 L~~l~~~~~~~~~~~~~~l~~~~~-~~d~~~A~~~~~k 138 (157)
T TIGR00714 102 LESFIKRVKKMFQTRHQLLVEQLD-NQTWAAAADYTRK 138 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 334444444444444444433221 1234444444443
No 159
>PF13991 BssS: BssS protein family
Probab=30.60 E-value=74 Score=20.05 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDS 34 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s 34 (94)
|++++..+|...|+..|+.+..+
T Consensus 42 lT~e~Ar~Li~~L~~~I~kiE~s 64 (73)
T PF13991_consen 42 LTTEMARQLISILEAGIDKIESS 64 (73)
T ss_pred ecHHHHHHHHHHHHHHHHHHHhC
Confidence 67788888888887777766543
No 160
>PRK10869 recombination and repair protein; Provisional
Probab=30.52 E-value=1.5e+02 Score=24.70 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDS 34 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s 34 (94)
+++++...++++++|++.|...
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~ 339 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQ 339 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCC
Confidence 5566666666666666554443
No 161
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.47 E-value=1.4e+02 Score=18.49 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
+++..+..+-. +..+++.|+..+..|+...
T Consensus 59 ~~l~~i~~~l~-l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 59 VNLAGVKRILE-LEEELAELRAELDELRARL 88 (91)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 45555555443 6677777777777776544
No 162
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=30.42 E-value=2.4e+02 Score=21.24 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+.++|.+.++.|+.+++.|...=+.|..-+..+..-++.+..+
T Consensus 39 d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~ 81 (228)
T PRK06800 39 DHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEH 81 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888777777666666655555543
No 163
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=30.27 E-value=94 Score=19.84 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCeeeeeEeccCCee
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
.|++|.|=|-.+..++|++...|..
T Consensus 10 ~g~~V~VeLKng~~~~G~L~~vD~~ 34 (90)
T cd01724 10 TNETVTIELKNGTIVHGTITGVDPS 34 (90)
T ss_pred CCCEEEEEECCCCEEEEEEEEEcCc
Confidence 4899999999999999999887654
No 164
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.15 E-value=1.5e+02 Score=18.88 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
..+|+.+...-..+......++.-++.|+..+.++
T Consensus 6 ~~~~~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l 40 (97)
T COG4842 6 RVNPEEMRATAKDYAGSSGEIQALLQDLASEIAKL 40 (97)
T ss_pred cCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35677777777666666666666666665554444
No 165
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.13 E-value=1.6e+02 Score=19.18 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q 034469 18 KAIKEQTDLEVNLL--QDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 18 ~~l~~ql~qei~~l--~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
...-.++|++++++ .+.+..|+...++.+....+++.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34446777888888 77777777777777766666653
No 166
>PRK15173 peptidase; Provisional
Probab=30.00 E-value=2.4e+02 Score=21.61 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.2
Q ss_pred EeccCCeeEEecCCCccC
Q 034469 77 TLDDARKVLVDIGTENDG 94 (94)
Q Consensus 77 kl~d~~kVlVdIGtGy~~ 94 (94)
++.+.|-|++|+|+.|.|
T Consensus 169 ~l~~Gd~V~iD~g~~~~G 186 (323)
T PRK15173 169 KACSGDLIKFDCGVDVDG 186 (323)
T ss_pred ccCCCCEEEEEeCccCCC
Confidence 456789999999997653
No 167
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.91 E-value=2.7e+02 Score=23.37 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
.+|.....++.+.-..|.+ .|+.|+.++...++-|+.|.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAE---LLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 3444444455555444444 45556677777777777765
No 168
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=29.78 E-value=2.7e+02 Score=22.15 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeE
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVL 85 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVl 85 (94)
+-.++..+...+...... .+-..-++.|+.++......++-+|+..+..|.|-..+.-+|+
T Consensus 10 ~~~~l~~i~~~vk~~~~~-~~~~~l~~~l~~~~~~~~~~~~~lP~~p~~~~~~i~~~~~~v~ 70 (353)
T cd05166 10 LVNKLGSIAEDVKSASES-ARQHVLRTGLGRVDSFLLQNKCRLPLNPALDVKGIDVRECSYF 70 (353)
T ss_pred HHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhhhccCCCCccCCCCceEEEeEEcCceEEe
Confidence 334455555555544321 2333334445554432233578899999999999877665553
No 169
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.60 E-value=55 Score=27.47 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 27 EVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 27 ei~~l~~s~~~L~~a~~~~ 45 (94)
+|+.|++++++|+..+.+.
T Consensus 32 kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 5555555555555444433
No 170
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.59 E-value=1.8e+02 Score=19.57 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 034469 31 LQDSLNNIRTATSRL 45 (94)
Q Consensus 31 l~~s~~~L~~a~~~~ 45 (94)
|..+.+.|..-...|
T Consensus 52 F~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 52 FAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 171
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.50 E-value=1.7e+02 Score=24.51 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 034469 44 RLESASTAL 52 (94)
Q Consensus 44 ~~~~~~~al 52 (94)
++.+-.+.|
T Consensus 108 eLEaE~~~L 116 (475)
T PRK13729 108 KLGQDNAAL 116 (475)
T ss_pred HHHHHHHHH
Confidence 333333333
No 172
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=29.38 E-value=1.2e+02 Score=17.35 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
+|.++-.++.+++.+-...+..|+.++.+.
T Consensus 12 ~l~~~l~elk~~l~~Q~kE~~~LRntI~eC 41 (45)
T PF11598_consen 12 ELNQMLQELKELLRQQIKETRFLRNTIMEC 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555554444555555554443
No 173
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.27 E-value=46 Score=25.83 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=25.9
Q ss_pred eEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 63 KMLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 63 eiLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
=+.+.++..-+|++....+..++||+|..|
T Consensus 204 IVIsavg~~~~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 204 ILVAAVGRPEMVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred EEEEecCChhhcchheecCCCEEEEcCCcc
Confidence 466778888899999889999999999876
No 174
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=29.26 E-value=29 Score=24.94 Aligned_cols=7 Identities=43% Similarity=0.933 Sum_probs=6.5
Q ss_pred EEecCCC
Q 034469 85 LVDIGTE 91 (94)
Q Consensus 85 lVdIGtG 91 (94)
++|||||
T Consensus 52 ~lDiGSG 58 (184)
T PF02527_consen 52 VLDIGSG 58 (184)
T ss_dssp EEEETST
T ss_pred EEecCCC
Confidence 8999998
No 175
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.26 E-value=1.3e+02 Score=18.04 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
.++..-.++++++++.+++....|+.-+.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445555566666666666666666665555443
No 176
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.20 E-value=1.9e+02 Score=20.27 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=8.4
Q ss_pred CCeeEEecCCCcc
Q 034469 81 ARKVLVDIGTEND 93 (94)
Q Consensus 81 ~~kVlVdIGtGy~ 93 (94)
.|.+||-+|..||
T Consensus 107 ~dG~iVki~~~yY 119 (149)
T PF11694_consen 107 TDGMIVKIGDKYY 119 (149)
T ss_pred cCCeEEEECCccE
Confidence 5566677766665
No 177
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.19 E-value=2.6e+02 Score=23.64 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034469 18 KAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (94)
Q Consensus 18 ~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~ 57 (94)
..--..+.+++..+.+.+++|+..+.++.+-++.|+.++.
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ 131 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGN 131 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3445778888888888888888888888888887776643
No 178
>PF09870 DUF2097: Uncharacterized protein conserved in archaea (DUF2097); InterPro: IPR019208 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.07 E-value=1.2e+02 Score=19.69 Aligned_cols=41 Identities=10% Similarity=0.224 Sum_probs=24.4
Q ss_pred HHHHHHHhccCC-CCCCeEEEecCCCeeeeeEeccCCeeEEec
Q 034469 47 SASTALHDLSLR-PQGAKMLVPLTASLYVPGTLDDARKVLVDI 88 (94)
Q Consensus 47 ~~~~al~~l~~~-~~~~eiLVPLt~slyV~gkl~d~~kVlVdI 88 (94)
.|.++++.++.. ++|.-+=+- =+-+||||++...+...+-+
T Consensus 7 ~~de~~eYi~~nV~e~D~lEis-ygRv~vpG~V~~~~~~~~~l 48 (86)
T PF09870_consen 7 TPDELIEYIKNNVKEGDYLEIS-YGRVHVPGEVLSIEDGFLRL 48 (86)
T ss_pred CHHHHHHHHHhcCCCCCEEEEE-eeEEEeeeEEEEeeeeEEEE
Confidence 456777777542 333332232 24689999998877655543
No 179
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=29.02 E-value=2.7e+02 Score=21.46 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~ 39 (94)
++++++++.+++..+.+.
T Consensus 240 ~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 240 EELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 180
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.96 E-value=1.9e+02 Score=23.16 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcc
Q 034469 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT----SRLESASTALHDLS 56 (94)
Q Consensus 8 ~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~----~~~~~~~~al~~l~ 56 (94)
++..+....|--..++|+.++++++-+-.-++..+ .++.-|.+-++.++
T Consensus 21 ~~~~~~~~dly~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriq 73 (408)
T KOG0727|consen 21 QLSGLDKEDLYVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQ 73 (408)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677788888999999998876655544433 34555666666554
No 181
>PRK07281 methionine aminopeptidase; Reviewed
Probab=28.82 E-value=1.8e+02 Score=22.16 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.3
Q ss_pred eEeccCCeeEEecCCC
Q 034469 76 GTLDDARKVLVDIGTE 91 (94)
Q Consensus 76 gkl~d~~kVlVdIGtG 91 (94)
-++.+-|-|+||+|.+
T Consensus 87 ~~l~~Gd~v~iD~g~~ 102 (286)
T PRK07281 87 YILKEGDLLKVDMVLS 102 (286)
T ss_pred cCcCCCCEEEEEeccc
Confidence 3578899999999974
No 182
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=28.80 E-value=89 Score=18.58 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 19 AIKEQTDLEVNLLQDSLNN 37 (94)
Q Consensus 19 ~l~~ql~qei~~l~~s~~~ 37 (94)
+.+.++..|++.|+..+..
T Consensus 2 ~~~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 2 QEKDQLKREIEQLRQELER 20 (68)
T ss_dssp THHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHcc
Confidence 3567788888888888776
No 183
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=28.74 E-value=1.8e+02 Score=19.29 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 30 LLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 30 ~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
.-...++.|+.-.+.+.+|..||+.|.
T Consensus 57 e~R~~~E~lQdkL~qi~eAR~AlDalR 83 (96)
T PF12210_consen 57 EKRVYYEGLQDKLAQIKEARAALDALR 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666777777777653
No 184
>PF05397 Med15_fungi: Mediator complex subunit 15; InterPro: IPR008626 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family represents subunit 15 of the Mediator complex in fungi. It contains Saccharomyces cerevisiae GAL11 (Med15) protein. Gal11 (Med15) and Sin4 (Med16) proteins are S. cerevisiae global transcription factors that regulate transcription of a variety of genes, both positively and negatively. Gal11, in a major part, functions in the activation of transcription, whereas Sin4 has an opposite role [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.61 E-value=1.8e+02 Score=19.36 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+||++|=.+.++++ +++..+-..+.+|-.--..+....++++.|
T Consensus 28 ~ls~eeK~~i~~~l-~~~~~m~~~vd~li~~f~~lt~ne~~~k~L 71 (115)
T PF05397_consen 28 SLSPEEKAAIRQQL-QEIQDMLARVDSLIPWFYKLTKNEENTKRL 71 (115)
T ss_pred cCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 68899999988888 455555555555555445555555555543
No 185
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=28.39 E-value=36 Score=24.84 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=8.1
Q ss_pred CCeeEEecCCCc
Q 034469 81 ARKVLVDIGTEN 92 (94)
Q Consensus 81 ~~kVlVdIGtGy 92 (94)
++.|.+|+|.|.
T Consensus 42 ~~dvF~DlGSG~ 53 (205)
T PF08123_consen 42 PDDVFYDLGSGV 53 (205)
T ss_dssp TT-EEEEES-TT
T ss_pred CCCEEEECCCCC
Confidence 567899999885
No 186
>PF12604 gp37_C: Tail fiber protein gp37 C terminal; InterPro: IPR022246 This domain family is found in bacterial prophage and viruses, and is typically between 49 and 166 amino acids in length. The family is found in association with PF03906 from PFAM. In T-even phages, Gp37 and Gp38 are components of the tail fibre that are critical for phage-host interaction. ; PDB: 4A0T_B 4A0U_B.
Probab=28.28 E-value=51 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.0
Q ss_pred ecCCCeeeeeEeccCCeeEEecCCC
Q 034469 67 PLTASLYVPGTLDDARKVLVDIGTE 91 (94)
Q Consensus 67 PLt~slyV~gkl~d~~kVlVdIGtG 91 (94)
+.+.++||.|+..+.++.-|..|.+
T Consensus 22 ~~~~~~yi~g~~~g~~~WyiG~G~~ 46 (145)
T PF12604_consen 22 SARASSYILGKDGGVDRWYIGNGSD 46 (145)
T ss_dssp STTS-EEEEEEETTEEEEEEEE-ST
T ss_pred cCCcceEEEEecCCcccEEEeccCC
Confidence 4677899999999999999998864
No 187
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=28.14 E-value=2e+02 Score=19.55 Aligned_cols=42 Identities=10% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 14 VEQLKAIKEQTDLEVN--------LLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~--------~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
.+++..++++++..++ .|+.+++........+.+|.+-+..+
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l 91 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL 91 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776 23444444444444444444444443
No 188
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=28.05 E-value=52 Score=19.21 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=12.8
Q ss_pred eeeeEecc--CCeeEEecCC
Q 034469 73 YVPGTLDD--ARKVLVDIGT 90 (94)
Q Consensus 73 yV~gkl~d--~~kVlVdIGt 90 (94)
-|.|++.. .+.++||+|.
T Consensus 6 iV~G~V~~~~~~~~~vdig~ 25 (67)
T cd04455 6 IVTGIVKRVDRGNVIVDLGK 25 (67)
T ss_pred EEEEEEEEEcCCCEEEEcCC
Confidence 36777764 5669999974
No 189
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=28.01 E-value=69 Score=19.51 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred CCeEEEecCCCeeeeeEeccCCe
Q 034469 61 GAKMLVPLTASLYVPGTLDDARK 83 (94)
Q Consensus 61 ~~eiLVPLt~slyV~gkl~d~~k 83 (94)
+++++|=|.++-++.|++..-|.
T Consensus 10 ~k~V~V~L~~g~~~~G~L~~~D~ 32 (72)
T cd01719 10 DKKLSLKLNGNRKVSGILRGFDP 32 (72)
T ss_pred CCeEEEEECCCeEEEEEEEEEcc
Confidence 68999999999999999987664
No 190
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=27.95 E-value=81 Score=19.13 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCeeeeeEeccCCeeEEecC
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIG 89 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kVlVdIG 89 (94)
+..++-|=|.+|.=++|++..-|++.|=+.
T Consensus 14 ~~~~Vti~L~nG~~l~G~I~~fD~ftVll~ 43 (61)
T TIGR02383 14 ERIPVTVFLVNGVQLKGVIESFDNFTVLLE 43 (61)
T ss_pred cCCcEEEEEeCCcEEEEEEEEEeeeEEEEE
Confidence 457889999999999999998888766543
No 191
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=27.93 E-value=1.9e+02 Score=20.79 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=14.2
Q ss_pred eEeccCCeeEEecCCCcc
Q 034469 76 GTLDDARKVLVDIGTEND 93 (94)
Q Consensus 76 gkl~d~~kVlVdIGtGy~ 93 (94)
.++.+.|-|++|+|.-|-
T Consensus 82 ~~l~~Gd~v~iD~g~~~~ 99 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYD 99 (247)
T ss_pred cccCCCCEEEEEEEEEEC
Confidence 357788999999997653
No 192
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.63 E-value=2.1e+02 Score=19.66 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 034469 28 VNLLQDSLNNIRTATSRLESASTALHDLSLR 58 (94)
Q Consensus 28 i~~l~~s~~~L~~a~~~~~~~~~al~~l~~~ 58 (94)
++.++..+..++....+...+++.|+.+=|.
T Consensus 89 v~els~~L~~~~~lL~~~v~~ie~LN~~LP~ 119 (131)
T PF10158_consen 89 VNELSQQLSRCQSLLNQTVPSIETLNEILPE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Confidence 5566666666666666777777777765443
No 193
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=27.53 E-value=3.2e+02 Score=21.82 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEecc------CCeeEE
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDD------ARKVLV 86 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d------~~kVlV 86 (94)
+...|.+..++|.+|...|.+.+..++.+..+-. -++.+-+ | ...-|++|++.. .+.+++
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~----~Lr~ll~---------~-~~~~~i~ArVI~r~ps~~~~~ltI 123 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPP----LFSEILS---------P-YFQKLIMGRVIFRDPAHWGSSCWI 123 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhc---------c-cccceEEEEEEEeCCCccceEEEE
Confidence 3455666667777777777776666554443211 1232211 1 011478888875 356888
Q ss_pred ecCC
Q 034469 87 DIGT 90 (94)
Q Consensus 87 dIGt 90 (94)
|.|+
T Consensus 124 nkGs 127 (337)
T PRK14872 124 NVGK 127 (337)
T ss_pred cccc
Confidence 8885
No 194
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=27.44 E-value=1.9e+02 Score=19.15 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 19 AIKEQTDLEVNLLQDSLNNIRTATSRLESAS 49 (94)
Q Consensus 19 ~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~ 49 (94)
+++++|++--..|.+..+.|+.|..++...+
T Consensus 64 ~~NerLqqa~~~Lkkk~e~L~~age~Le~~i 94 (97)
T PF15136_consen 64 AMNERLQQARDQLKKKCEELRQAGEELERDI 94 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666777776666665543
No 195
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=27.36 E-value=1.5e+02 Score=18.01 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 034469 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQ 32 (94)
Q Consensus 1 m~~~~~i~l~~L~~~qL~~l~~ql~qei~~l~ 32 (94)
|+--..-++.++++++|......+..|+-.|.
T Consensus 1 M~~mk~~elr~ls~~eL~~~l~elk~elf~LR 32 (67)
T CHL00154 1 MSLPKITDIIDLTDSEISEEIIKTKKELFDLR 32 (67)
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 44334456788999999998888888887665
No 196
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=27.35 E-value=2.6e+02 Score=24.25 Aligned_cols=41 Identities=7% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
++..+.+++++.-+.|..+|.+|..+.++++.--..|..+-
T Consensus 615 ~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~ 655 (661)
T PRK06664 615 KIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFN 655 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666667888888888888888888877777643
No 197
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=27.34 E-value=1.3e+02 Score=17.27 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATS 43 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~ 43 (94)
+-+..++.+....++.|++.+..+.....
T Consensus 12 Eslv~FQ~~v~~~lq~Lt~kL~~vs~RLe 40 (47)
T PF10393_consen 12 ESLVAFQNKVTSALQSLTQKLDAVSKRLE 40 (47)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888776654443
No 198
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.32 E-value=2.7e+02 Score=22.46 Aligned_cols=38 Identities=11% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.|......++.++..+...+..++..+.++.+..+-+.
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~ 340 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLL 340 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666666666655555544444433333
No 199
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.26 E-value=1.3e+02 Score=17.73 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.2
Q ss_pred CCCeEEEecCCCeeeeeEeccCCee
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
.|+.+.|=|-.+-.+.|++...|..
T Consensus 9 ~~~~V~V~Lk~g~~~~G~L~~~D~~ 33 (67)
T cd01726 9 IGRPVVVKLNSGVDYRGILACLDGY 33 (67)
T ss_pred CCCeEEEEECCCCEEEEEEEEEccc
Confidence 3789999999999999999876653
No 200
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.26 E-value=1.7e+02 Score=18.54 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
+.+|..-+.+|+.|++.+.+.+++++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777778888777766665543
No 201
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.18 E-value=2.3e+02 Score=22.43 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 20 IKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 20 l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
.++.|..++..+.+.+.+|...++++..=+.+|+.+
T Consensus 155 qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~l 190 (300)
T KOG2629|consen 155 QQSELSRALASLKNTLVQLSRNIEKLESEINTIKQL 190 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334455555555555555666677788778888763
No 202
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=27.11 E-value=47 Score=20.91 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=15.6
Q ss_pred CCCCCeEEEecCCCeeee
Q 034469 58 RPQGAKMLVPLTASLYVP 75 (94)
Q Consensus 58 ~~~~~eiLVPLt~slyV~ 75 (94)
..+|..+|||-.+-.||-
T Consensus 44 D~kGr~~lVp~~~iaYVe 61 (74)
T PF11305_consen 44 DEKGRRVLVPAASIAYVE 61 (74)
T ss_pred eCCCCEEEEECCcEEEEE
Confidence 466999999999999985
No 203
>smart00338 BRLZ basic region leucin zipper.
Probab=27.05 E-value=1.4e+02 Score=17.38 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
..|+.+++.|......|......+..-...|+.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444444443
No 204
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=27.02 E-value=1.8e+02 Score=18.80 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC---CCeEEEec-CCCeeeeeEeccCCe
Q 034469 34 SLNNIRTATSRLESASTALHDLSLRPQ---GAKMLVPL-TASLYVPGTLDDARK 83 (94)
Q Consensus 34 s~~~L~~a~~~~~~~~~al~~l~~~~~---~~eiLVPL-t~slyV~gkl~d~~k 83 (94)
-+..+-...+=|...++.++.+...++ .+-+||+. ..++|+-|=+.+.+.
T Consensus 30 ll~riP~v~~iY~~~k~~~~~~~~~~~~~f~~vVlV~~p~~g~~~igFvT~~~~ 83 (108)
T PF04367_consen 30 LLQRIPLVKSIYSSIKQLVESFSGDKKKSFKKVVLVEFPRPGMYVIGFVTGEDP 83 (108)
T ss_pred HHHHCCchHHHHHHHHHHHHHHhhcccccCCeEEEEEecCCCcEEEEEEeccCc
Confidence 334444444557777777777644222 35899999 789999998876543
No 205
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.97 E-value=3.5e+02 Score=22.09 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.+..++.++.++-.-+.+++..+...+..+...+.+..+.++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 121 RNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ 165 (525)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999998888888888877777777666664
No 206
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.73 E-value=1.6e+02 Score=18.14 Aligned_cols=25 Identities=8% Similarity=0.124 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESA 48 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~ 48 (94)
+..+-..|.....+|+.-+..+.+-
T Consensus 37 L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 37 LKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333333333
No 207
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=26.60 E-value=37 Score=23.73 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=17.9
Q ss_pred CCeeeeeEeccCCeeEEecCCCc
Q 034469 70 ASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 70 ~slyV~gkl~d~~kVlVdIGtGy 92 (94)
+.+||+|.++..|.- |-||+|=
T Consensus 42 al~~~~G~lE~vDg~-i~IGs~q 63 (145)
T TIGR02542 42 ALLYVHGTLEQVDGN-IRIGSGQ 63 (145)
T ss_pred hhheeeeehhhccCc-EEEccCC
Confidence 358999999998877 7788873
No 208
>PRK00736 hypothetical protein; Provisional
Probab=26.57 E-value=1.6e+02 Score=17.87 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
+++|+..--+-+++|+.|+..+..|.
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555544443
No 209
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=26.46 E-value=2.1e+02 Score=20.19 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
|..+..++++++..+.+.+...-.. ..+..|...+..|
T Consensus 115 l~~l~~~~~~~~~~~~~~l~~~~~~-~d~~~A~~~~~~L 152 (171)
T PRK05014 115 LESFIKRVKKMFKTRLQQMVEQLDN-EAWDAAADTVRKL 152 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 5555566666666555555543322 3455665555544
No 210
>PRK11281 hypothetical protein; Provisional
Probab=26.45 E-value=3.8e+02 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 7 i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L 38 (94)
-+..++++.||++.-.+++++++..++.++.+
T Consensus 116 ~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 116 ETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999888888888888888876
No 211
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=26.37 E-value=74 Score=19.15 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=16.4
Q ss_pred CeeeeeEecc--CCeeEEecCCCccC
Q 034469 71 SLYVPGTLDD--ARKVLVDIGTENDG 94 (94)
Q Consensus 71 slyV~gkl~d--~~kVlVdIGtGy~~ 94 (94)
+-.|.|++.+ ++.+.|++|.++.|
T Consensus 7 GdiV~g~V~~i~~~g~~v~i~~~~~G 32 (86)
T cd05789 7 GDVVIGRVTEVGFKRWKVDINSPYDA 32 (86)
T ss_pred CCEEEEEEEEECCCEEEEECCCCeEE
Confidence 4456677764 66788999887643
No 212
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=26.20 E-value=71 Score=20.40 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=16.3
Q ss_pred eeeEeccC--CeeEEecCCCccC
Q 034469 74 VPGTLDDA--RKVLVDIGTENDG 94 (94)
Q Consensus 74 V~gkl~d~--~kVlVdIGtGy~~ 94 (94)
|=|++.+. +...||||+-|.|
T Consensus 10 VIG~V~~~~~~~~~VdI~s~~~a 32 (86)
T cd05790 10 VIGIVVAKAGDFFKVDIGGSEPA 32 (86)
T ss_pred EEEEEEEEcCCeEEEEcCCCcce
Confidence 44888775 9999999987654
No 213
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=26.09 E-value=72 Score=24.39 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=25.4
Q ss_pred CeEEEecCCCeeee-------eEecc--CCeeEEecCCCccC
Q 034469 62 AKMLVPLTASLYVP-------GTLDD--ARKVLVDIGTENDG 94 (94)
Q Consensus 62 ~eiLVPLt~slyV~-------gkl~d--~~kVlVdIGtGy~~ 94 (94)
.-..|||.+ -|+| |++.+ ++.-.||||+=|.|
T Consensus 50 ~v~VIpl~g-~YiP~~gD~VIG~I~~v~~~~W~VDI~sp~~A 90 (239)
T COG1097 50 LVRVIPLEG-RYIPEVGDVVIGKIIEVGPSGWKVDIGSPYPA 90 (239)
T ss_pred EEEEEeCCC-cccCCCCCEEEEEEEEEcccceEEEcCCccce
Confidence 356799998 8977 77765 78889999997764
No 214
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.05 E-value=2.1e+02 Score=23.76 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQ 32 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~ 32 (94)
+++++...+++++++++.+.
T Consensus 323 s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555433
No 215
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=25.80 E-value=93 Score=18.84 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCeeeeeEeccCCeeEEecC
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIG 89 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kVlVdIG 89 (94)
+..++-|=|.+|.=++|++.+-|++.|=+.
T Consensus 10 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~ 39 (61)
T cd01716 10 EKIPVTIYLVNGVQLKGQIESFDNFTVLLE 39 (61)
T ss_pred cCCcEEEEEeCCcEEEEEEEEEcceEEEEE
Confidence 457899999999999999998888766443
No 216
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.75 E-value=2.3e+02 Score=19.47 Aligned_cols=14 Identities=14% Similarity=0.359 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSL 35 (94)
Q Consensus 22 ~ql~qei~~l~~s~ 35 (94)
+.|.+.|+.+...+
T Consensus 64 khLsqRId~vd~kl 77 (126)
T PF07889_consen 64 KHLSQRIDRVDDKL 77 (126)
T ss_pred HHHHHHHHHHHhhH
Confidence 33333333333333
No 217
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=25.73 E-value=38 Score=27.93 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=10.4
Q ss_pred cCCeeEEecCCC
Q 034469 80 DARKVLVDIGTE 91 (94)
Q Consensus 80 d~~kVlVdIGtG 91 (94)
-.+||++|+|+|
T Consensus 176 F~~kiVlDVGaG 187 (517)
T KOG1500|consen 176 FQDKIVLDVGAG 187 (517)
T ss_pred cCCcEEEEecCC
Confidence 378999999998
No 218
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=25.64 E-value=73 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEV 28 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei 28 (94)
.++++++.++..++..++
T Consensus 62 ~~~~~e~~~~y~~~~~~i 79 (308)
T cd07211 62 KMSLDECEELYRKLGKDV 79 (308)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 367777777777666543
No 219
>PRK11020 hypothetical protein; Provisional
Probab=25.54 E-value=1.9e+02 Score=19.82 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 20 IKEQTDLEVNLLQDSLNNIRTATSR 44 (94)
Q Consensus 20 l~~ql~qei~~l~~s~~~L~~a~~~ 44 (94)
...|+..|++.|+..|+.|+..++.
T Consensus 32 ~i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 32 KYAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889999999999999987743
No 220
>COG3584 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.39 E-value=33 Score=23.29 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=12.2
Q ss_pred eEEEecCCCeeeee
Q 034469 63 KMLVPLTASLYVPG 76 (94)
Q Consensus 63 eiLVPLt~slyV~g 76 (94)
+-.+|||+-+||+|
T Consensus 56 P~ViPlGs~v~V~g 69 (109)
T COG3584 56 PSVIPLGSRVYVPG 69 (109)
T ss_pred CceecccCEEEEcC
Confidence 34699999999998
No 221
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=25.26 E-value=1.5e+02 Score=17.11 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q 034469 8 GMEKMSVEQLKAIKEQTDLEVNLLQ 32 (94)
Q Consensus 8 ~l~~L~~~qL~~l~~ql~qei~~l~ 32 (94)
+|-++|.++|...-..+..|+-.|.
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr 25 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELR 25 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887777776665
No 222
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.26 E-value=2.7e+02 Score=20.19 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 18 KAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 18 ~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
..-...|..++..+..--..|..+.+++.....-|+.|
T Consensus 68 ~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 223
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=25.26 E-value=79 Score=19.29 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 034469 6 GGGMEKMSVEQLKAIKEQTDLEVNLLQ 32 (94)
Q Consensus 6 ~i~l~~L~~~qL~~l~~ql~qei~~l~ 32 (94)
.-+|.+++.++|...-..+..|+-.|.
T Consensus 6 ~~elr~ls~~eL~~~l~elk~eLf~LR 32 (69)
T PRK14549 6 ASEIREMSPEEREEKLEELKLELLKER 32 (69)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 356778999999988888888887776
No 224
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=25.11 E-value=1e+02 Score=22.15 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
.+++.|||... -||+=-=.+..++.||-..|+
T Consensus 141 ~~k~~LIPf~~-~~V~~Vd~~~k~I~v~~~~~l 172 (174)
T COG0806 141 GKKERLIPFVD-AVVKEVDLEAKKIEVDPDEGL 172 (174)
T ss_pred CCcEEEecchH-heeeEEecCCCEEEEeccchh
Confidence 35899999999 888877778889999887765
No 225
>PF14071 YlbD_coat: Putative coat protein
Probab=25.08 E-value=1.5e+02 Score=20.52 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
++++..|..+++.|..++.....|..
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~ 105 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQG 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666666666666666655543
No 226
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=25.04 E-value=2.5e+02 Score=20.47 Aligned_cols=35 Identities=9% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
++++..+..+++++..+.....+|+......+..+
T Consensus 160 ~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K 194 (204)
T PF10368_consen 160 KQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEK 194 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888777776543
No 227
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=25.04 E-value=1.1e+02 Score=24.27 Aligned_cols=39 Identities=10% Similarity=0.305 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
|..+..+++.+-+.+...+..|.....+++....=++.+
T Consensus 59 Le~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM 97 (324)
T PF12126_consen 59 LEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKM 97 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Confidence 444555666666666666666666666655554444443
No 228
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=24.97 E-value=61 Score=22.11 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=16.2
Q ss_pred eEEEecCCCeeeeeEecc-CCeeEEecCCCc
Q 034469 63 KMLVPLTASLYVPGTLDD-ARKVLVDIGTEN 92 (94)
Q Consensus 63 eiLVPLt~slyV~gkl~d-~~kVlVdIGtGy 92 (94)
|.+.. ...+||+-++.+ +-|.+||-|+..
T Consensus 17 E~f~~-v~mLyI~~~ing~~vkA~VDtGAQ~ 46 (124)
T PF09668_consen 17 ESFGQ-VSMLYINCKINGVPVKAFVDTGAQS 46 (124)
T ss_dssp ----------EEEEEETTEEEEEEEETT-SS
T ss_pred HhhcC-cceEEEEEEECCEEEEEEEeCCCCc
Confidence 44554 447999999987 558999999865
No 229
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.93 E-value=3e+02 Score=21.61 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
+..||..||..-..++..-|...+..+..++.-+.++...++..
T Consensus 64 l~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 64 LKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888877777777776666665555443
No 230
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.86 E-value=2.1e+02 Score=18.72 Aligned_cols=26 Identities=4% Similarity=0.142 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
.++.+..++++++-+.|...+..|+.
T Consensus 37 ~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444445666677777777777765
No 231
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.78 E-value=2.2e+02 Score=21.46 Aligned_cols=19 Identities=5% Similarity=0.228 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 18 KAIKEQTDLEVNLLQDSLN 36 (94)
Q Consensus 18 ~~l~~ql~qei~~l~~s~~ 36 (94)
...-+++++|+..|+.+++
T Consensus 60 ~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3333444444444444444
No 232
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.74 E-value=3.3e+02 Score=20.99 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
.+|.+..+..+..+..|++++.+|..-+.+..+=...|..++
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk 111 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK 111 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777788888899999999999887777777666666655
No 233
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=24.61 E-value=1.2e+02 Score=21.59 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034469 18 KAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (94)
Q Consensus 18 ~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~ 57 (94)
..++..+..+++.+..+++.|......+++|.=+++.|..
T Consensus 76 ~~L~~kL~~qLq~l~ds~qiL~~~~q~Ld~~~Wsl~~La~ 115 (159)
T PF08824_consen 76 RNLQAKLRRQLQPLEDSYQILLQTSQALDSCNWSLDVLAR 115 (159)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence 3566788889999999999999999999999888887653
No 234
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=24.43 E-value=2.5e+02 Score=19.42 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
+=|+.+-...++.+..+...|+.+.....-+..-..+|..|+
T Consensus 10 ~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpgLe 51 (148)
T PF10152_consen 10 QFLNRFASVCEEKLSDMEQRLQRLEATLNILEAKLSSIPGLE 51 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 346677777888999999999998888766666666665543
No 235
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=24.43 E-value=3.1e+02 Score=20.55 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 8 ~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
|+-+-.++++.+|..=++.|+++.+++.+.|+..+..+.+
T Consensus 179 n~le~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 179 NFLENDVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888888888888888888888888887776654
No 236
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.41 E-value=2.1e+02 Score=18.74 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSL 35 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~ 35 (94)
..+.+-+.++++|++.|++++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677789999999999888
No 237
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.40 E-value=1.9e+02 Score=18.15 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 034469 24 TDLEVNLLQDSLNN 37 (94)
Q Consensus 24 l~qei~~l~~s~~~ 37 (94)
++++++.+...+..
T Consensus 75 l~~~l~~l~~~~~~ 88 (104)
T PF13600_consen 75 LEEELEALEDELAA 88 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 238
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=24.25 E-value=2.8e+02 Score=21.48 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCeEEEecCCCeeee------eEeccCCeeEEecCCCcc
Q 034469 61 GAKMLVPLTASLYVP------GTLDDARKVLVDIGTEND 93 (94)
Q Consensus 61 ~~eiLVPLt~slyV~------gkl~d~~kVlVdIGtGy~ 93 (94)
.-+..|..|...-+| -++.+.|-|++|+|+-|.
T Consensus 207 sf~~iv~~G~n~a~pH~~~~~~~~~~gd~vliD~G~~~~ 245 (384)
T COG0006 207 SFDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYN 245 (384)
T ss_pred CcCcEEeccccccCcCCCCCcccccCCCEEEEEeeeEEC
Confidence 356667777655433 345678999999998764
No 239
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.20 E-value=2.2e+02 Score=18.73 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
.|.....+++++++.++...+.++....+..+-...+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666665555544444433
No 240
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=24.12 E-value=62 Score=19.60 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=15.6
Q ss_pred CCCeeeeeEeccCCeeEEecCCCcc
Q 034469 69 TASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 69 t~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
.+.+|+ ++| .++|+|-||.+|+
T Consensus 17 e~dlY~-A~I--d~kv~~KiGp~~~ 38 (61)
T smart00810 17 EADLYV-AMI--DEKVIMKIGPRYD 38 (61)
T ss_pred cCCcEE-EEe--CCeEEEEECCCCC
Confidence 345666 444 4599999999875
No 241
>PRK05716 methionine aminopeptidase; Validated
Probab=24.07 E-value=2.7e+02 Score=19.88 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.5
Q ss_pred EeccCCeeEEecCCCcc
Q 034469 77 TLDDARKVLVDIGTEND 93 (94)
Q Consensus 77 kl~d~~kVlVdIGtGy~ 93 (94)
.+.+.+-|++|+|..|.
T Consensus 85 ~l~~Gd~v~id~g~~~~ 101 (252)
T PRK05716 85 VLKEGDIVNIDVTVIKD 101 (252)
T ss_pred ccCCCCEEEEEEEEEEC
Confidence 56778899999998654
No 242
>COG5442 FlaF Flagellar biosynthesis regulator FlaF [Cell motility and secretion]
Probab=24.00 E-value=1.3e+02 Score=20.52 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 23 ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
.-+.|-+.|+.++..|..|+..-..+.++++.
T Consensus 17 akdRer~~ltRsiall~aa~a~~~~sre~IeA 48 (115)
T COG5442 17 AKDRERQLLTRSIALLDAARAPGDDSREAIEA 48 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 34567788999999999998766555555543
No 243
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.98 E-value=1.8e+02 Score=17.74 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
+||++|-..++.-+++........-.+++...
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r 72 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQEMRALRQELRAAR 72 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777776555554444444444433333
No 244
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=23.88 E-value=3.6e+02 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=5.3
Q ss_pred EeccCCeeEEe
Q 034469 77 TLDDARKVLVD 87 (94)
Q Consensus 77 kl~d~~kVlVd 87 (94)
++.|.+++-|+
T Consensus 205 ~i~~~~~l~v~ 215 (397)
T PRK15030 205 TVQQLDPIYVD 215 (397)
T ss_pred EEEecCcEEEE
Confidence 44455554444
No 245
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=23.81 E-value=3e+02 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
+||+.+.+--+.|+.+|.+.+....
T Consensus 265 eqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 265 EQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555555566666666654443
No 246
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=23.75 E-value=2.6e+02 Score=19.57 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=17.6
Q ss_pred CCCeEEEecCCCeeeeeEecc
Q 034469 60 QGAKMLVPLTASLYVPGTLDD 80 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d 80 (94)
-|+++.+..+.+-++.|.+..
T Consensus 91 VGk~V~~~~~~g~~~tG~V~~ 111 (142)
T PRK09618 91 IGKEVEWEGEDGEIVSGTVTS 111 (142)
T ss_pred hCCEEEEEeCCCCEEEEEEEE
Confidence 388999999999999998764
No 247
>PRK10780 periplasmic chaperone; Provisional
Probab=23.57 E-value=2.6e+02 Score=19.32 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=16.4
Q ss_pred HHHHhccCCCCCCeEEEecCCCeeeeeEe
Q 034469 50 TALHDLSLRPQGAKMLVPLTASLYVPGTL 78 (94)
Q Consensus 50 ~al~~l~~~~~~~eiLVPLt~slyV~gkl 78 (94)
++|+.+. ..+|-.+.+.-++-+|+...+
T Consensus 127 ~ai~~va-k~~gy~~Vld~~~v~Y~~~~~ 154 (165)
T PRK10780 127 TAVKSVA-NKQGYDLVVDANAVAYNSSDK 154 (165)
T ss_pred HHHHHHH-HHcCCeEEEeCCceeeeCCCC
Confidence 4444443 344667666667777876553
No 248
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=23.54 E-value=84 Score=20.49 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.0
Q ss_pred EecCCCeeeeeEec-cCCeeEEecCCC
Q 034469 66 VPLTASLYVPGTLD-DARKVLVDIGTE 91 (94)
Q Consensus 66 VPLt~slyV~gkl~-d~~kVlVdIGtG 91 (94)
+.-|..+.|+|++. +++++-|++.+|
T Consensus 10 l~~G~~i~i~G~~~~~~~~f~inl~~~ 36 (133)
T PF00337_consen 10 LSPGDSIIIRGTVPPDAKRFSINLQTG 36 (133)
T ss_dssp EETTEEEEEEEEEBTTSSBEEEEEEES
T ss_pred CCCCcEEEEEEEECCCCCEEEEEecCC
Confidence 36677889999998 689999999887
No 249
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=23.54 E-value=88 Score=19.48 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 19 AIKEQTDLEVNLLQDSLNNIRTATS 43 (94)
Q Consensus 19 ~l~~ql~qei~~l~~s~~~L~~a~~ 43 (94)
.+|.++.+.++.+...++.+..+..
T Consensus 10 ~~K~~lk~~L~~I~~~~~~i~~~ld 34 (70)
T PF10372_consen 10 PLKEQLKQYLEQIEEEISQIIQTLD 34 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777777777776655443
No 250
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=23.44 E-value=2.6e+02 Score=19.92 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSL 35 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~ 35 (94)
|..+...+.+.++.+...+
T Consensus 116 L~~l~~~v~~~~~~~~~~l 134 (173)
T PRK01773 116 LTAFSKEIKQEQQAILTEL 134 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 251
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=23.44 E-value=1.4e+02 Score=20.88 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
+++++|||... -||+--=.+..++.|+...+|
T Consensus 138 ~~ke~LIP~~~-~~V~~iD~e~k~I~v~~~~~~ 169 (169)
T PRK14591 138 DNSEYLIPYVK-QYIVSEDLNSKKIVVDWEYDY 169 (169)
T ss_pred CCeEEEEeChh-heeeeEEcCCCEEEEecCCCC
Confidence 46899999984 577654456778888876654
No 252
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=23.36 E-value=2.2e+02 Score=18.41 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
.+.+|..--++|..+++.+++-++.++.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~a 52 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRP 52 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 253
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=23.21 E-value=48 Score=24.60 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=10.3
Q ss_pred ccCCeeEEecCCC
Q 034469 79 DDARKVLVDIGTE 91 (94)
Q Consensus 79 ~d~~kVlVdIGtG 91 (94)
.+.+-+++|||+|
T Consensus 110 ~~~~~lviDIGGG 122 (285)
T PF02541_consen 110 PDKNGLVIDIGGG 122 (285)
T ss_dssp TTSSEEEEEEESS
T ss_pred ccCCEEEEEECCC
Confidence 4456799999998
No 254
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=23.14 E-value=1.4e+02 Score=16.24 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
|..||..|+..+..=......+..-..+|..+
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 56677777776665555555555555555443
No 255
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=23.06 E-value=1.8e+02 Score=24.81 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCC
Q 034469 43 SRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTE 91 (94)
Q Consensus 43 ~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtG 91 (94)
..+..|++++.. ..|..++|| +|.|+.|-|.=..++-..+=.|
T Consensus 100 ~aiq~AI~~ca~----a~Gg~V~lP--aGtylsg~l~LKS~~~L~l~eg 142 (542)
T COG5434 100 AAIQAAIDACAS----AGGGTVLLP--AGTYLSGPLFLKSNVTLHLAEG 142 (542)
T ss_pred HHHHHHHHhhhh----hcCceEEEC--CceeEeeeEEEecccEEEecCC
Confidence 344555555554 347899999 7799999998888877776443
No 256
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=23.01 E-value=1.2e+02 Score=20.45 Aligned_cols=27 Identities=4% Similarity=0.176 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 21 KEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
..+++++++.|..+..+|+.-...|..
T Consensus 47 ~~ege~~~qkL~eqteeLK~kvqe~sk 73 (106)
T PF12443_consen 47 IREGEQMIQKLGEQTEELKDKVQEFSK 73 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666666666666655544443
No 257
>PRK00295 hypothetical protein; Provisional
Probab=23.00 E-value=1.9e+02 Score=17.52 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
+++|+..--+-+++|+.|+..+..|.
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 258
>PRK00055 ribonuclease Z; Reviewed
Probab=22.98 E-value=66 Score=22.99 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=14.5
Q ss_pred CCCeeeeeEeccCCeeEEecCCCc
Q 034469 69 TASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 69 t~slyV~gkl~d~~kVlVdIGtGy 92 (94)
+++++|.. +..++|+|.|.|.
T Consensus 20 ~~~~li~~---~~~~iLiD~G~g~ 40 (270)
T PRK00055 20 VSSILLRL---GGELFLFDCGEGT 40 (270)
T ss_pred CCEEEEEE---CCcEEEEECCHHH
Confidence 45555532 4578999999884
No 259
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.97 E-value=2.4e+02 Score=18.69 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
.+|-..-.++++++..+.+.++.|+.....+.+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E 36 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLE 36 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777777777766555443
No 260
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.79 E-value=1.7e+02 Score=16.96 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
.+|+.++..|+.....|+.....+..-...|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444444444443
No 261
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=22.76 E-value=40 Score=26.08 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.9
Q ss_pred EeccCCeeEEecCCC
Q 034469 77 TLDDARKVLVDIGTE 91 (94)
Q Consensus 77 kl~d~~kVlVdIGtG 91 (94)
...+..+.++|+|||
T Consensus 29 ~~~~~h~~a~DvG~G 43 (261)
T KOG3010|consen 29 SRTEGHRLAWDVGTG 43 (261)
T ss_pred hhCCCcceEEEeccC
Confidence 445667799999998
No 262
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=22.76 E-value=58 Score=21.71 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=8.8
Q ss_pred cCCeeEEecCCC
Q 034469 80 DARKVLVDIGTE 91 (94)
Q Consensus 80 d~~kVlVdIGtG 91 (94)
.+...+||+|+|
T Consensus 24 ~~~~~vvD~GsG 35 (141)
T PF13679_consen 24 KRCITVVDLGSG 35 (141)
T ss_pred CCCCEEEEeCCC
Confidence 355677899887
No 263
>PRK08453 fliD flagellar capping protein; Validated
Probab=22.74 E-value=2.3e+02 Score=24.79 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
+++++.-+.+..+|.+|..++++++.
T Consensus 642 ~rL~~ry~rl~~qFsAmDs~IsqmNs 667 (673)
T PRK08453 642 ELLKTRYDIMAERFAAYDSQISKANQ 667 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444444443
No 264
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=22.70 E-value=2.9e+02 Score=21.85 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCee
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
+-.++..++..+........+-....+.|+.++. ....++.+|+-.+..|.|-..+.-+|
T Consensus 10 ~~~~l~~i~~~ik~~~~~~~~~~~l~~~L~~~~~-~~~~~~~lP~~p~~~i~~i~~~~~~v 69 (352)
T cd00891 10 VINELKTLAKKVKREKSKSQRKELLREELKKLEN-NLPQEFTLPLDPRLEIKGLIIEKCKV 69 (352)
T ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHhhhhc-cCCCCccCCCCCceEEEEEeccceEE
Confidence 3344555555554431112233333344444432 23467999999999999887665444
No 265
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=22.66 E-value=94 Score=16.93 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=13.7
Q ss_pred eeeeEecc--CCeeEEecCCCcc
Q 034469 73 YVPGTLDD--ARKVLVDIGTEND 93 (94)
Q Consensus 73 yV~gkl~d--~~kVlVdIGtGy~ 93 (94)
-+.|++.. +..+.|++|.|+.
T Consensus 5 ~v~g~V~~v~~~g~~v~i~~~~~ 27 (72)
T smart00316 5 VVEGTVTEITPFGAFVDLGNGVE 27 (72)
T ss_pred EEEEEEEEEEccEEEEEeCCCCE
Confidence 45566654 4568888887764
No 266
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=22.36 E-value=1.2e+02 Score=20.29 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~ 40 (94)
++|.+++++++++++.|..
T Consensus 43 rqllekVqNmSqsievL~~ 61 (101)
T PF12308_consen 43 RQLLEKVQNMSQSIEVLDL 61 (101)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5666788888888887764
No 267
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=22.23 E-value=4.1e+02 Score=21.25 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=5.3
Q ss_pred CCeeeeeEecc
Q 034469 70 ASLYVPGTLDD 80 (94)
Q Consensus 70 ~slyV~gkl~d 80 (94)
..++|.+.+.+
T Consensus 356 ~~l~v~~~V~e 366 (457)
T TIGR01000 356 RKLKVTAYLPS 366 (457)
T ss_pred CcEEEEEEeCH
Confidence 33555555443
No 268
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=22.15 E-value=3.4e+02 Score=20.18 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
..+++..|..=++.++++..++.+.|...+..+.+
T Consensus 184 e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 184 DVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQE 218 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777766666554
No 269
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=22.07 E-value=1.2e+02 Score=14.78 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 20 IKEQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 20 l~~ql~qei~~l~~s~~~L 38 (94)
-+++|+.+.+-|....+.+
T Consensus 2 akk~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhc
Confidence 3567777777777666544
No 270
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.02 E-value=45 Score=25.90 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=25.3
Q ss_pred CeE-EEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 62 AKM-LVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 62 ~ei-LVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
.+| .+..|.-=||++....+..++||+|..|
T Consensus 201 ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 201 ADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CCEEEEccCCcCccCHHHcCCCCEEEEecccc
Confidence 344 4557777789999999999999999887
No 271
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.98 E-value=1.5e+02 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
+.+.+|.+.|+.|+.+|+.|...=++|+.
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~ 32 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEK 32 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666665554
No 272
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=21.96 E-value=67 Score=23.45 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=11.7
Q ss_pred ccCCeeEEecCCCcc
Q 034469 79 DDARKVLVDIGTEND 93 (94)
Q Consensus 79 ~d~~kVlVdIGtGy~ 93 (94)
...+-++|+||||+.
T Consensus 160 ~~~~~~vlSiGTG~~ 174 (258)
T cd07199 160 DKDDILVLSLGTGTS 174 (258)
T ss_pred CCCceEEEEecCCCC
Confidence 345678999999985
No 273
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=21.93 E-value=1.3e+02 Score=17.95 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q 034469 8 GMEKMSVEQLKAIKEQTDLEVNLLQ 32 (94)
Q Consensus 8 ~l~~L~~~qL~~l~~ql~qei~~l~ 32 (94)
++.+++.++|...-..+..|+-.|.
T Consensus 5 elr~ls~~eL~~~l~~lkkeL~~lR 29 (66)
T PRK00306 5 ELRELSVEELNEKLLELKKELFNLR 29 (66)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 5778999999988888888877665
No 274
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.92 E-value=2.2e+02 Score=18.03 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+.++.+.|..+...|.....++..+...|+.+
T Consensus 43 iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~ 74 (90)
T PF02970_consen 43 IKKQEEVLEETKMMIPDCQQRLEKAVEDLEEF 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556666667777777777777777776654
No 275
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=21.74 E-value=3.8e+02 Score=20.68 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLN-----------NIRTATSRLESASTALHDLS 56 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~-----------~L~~a~~~~~~~~~al~~l~ 56 (94)
++|++-..+||+.+++.++..++ +++...+|+.........++
T Consensus 53 leqVnnQIqqlQnQaq~yqNmlqNta~l~~~iw~Ql~~~l~kl~~l~d~aqg~a 106 (252)
T COG5314 53 LEQVNNQIQQLQNQAQQYQNMLQNTAALPFYIWGQLSQVLNKLQNLQDQAQGYA 106 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555555666666666655443 55556666666666665554
No 276
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.73 E-value=2.1e+02 Score=17.55 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATS 43 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~ 43 (94)
+++|..+.++|..|=..|.++...+..-..
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~ 38 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERA 38 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888777665443
No 277
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=3.3e+02 Score=22.84 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
.++..--+.|+.|+..+...+..+..++.+|.+++..+
T Consensus 40 ~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~ei 77 (460)
T KOG3771|consen 40 NKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEI 77 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555567888899999999999999998888876554
No 278
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=21.65 E-value=1.9e+02 Score=20.44 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 11 KMSVEQLKAIKEQTDLEVN----LLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~----~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
++|+++-+.+++||-+++= ....+...+-.+--.=++|.+||++
T Consensus 90 ~mS~~EYM~lKkqLae~il~~s~~~~e~v~v~a~a~v~~eeAr~alee 137 (153)
T COG4008 90 NMSPEEYMELKKQLAEYILGHSEPPVEEVEVLADAFVTPEEAREALEE 137 (153)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5899999999999988763 2333444443333333556666654
No 279
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.65 E-value=1.7e+02 Score=22.58 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCCCCCCeEEEecCCC
Q 034469 22 EQTDLEVNLLQDSLNNIRTA------TSRLESASTALHDLSLRPQGAKMLVPLTAS 71 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a------~~~~~~~~~al~~l~~~~~~~eiLVPLt~s 71 (94)
+.+-.|++.++.-+..|+.. ..+|..|.+||++.-|.....|++|=++-|
T Consensus 91 Eklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmgHG 146 (265)
T COG4822 91 EKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLMGHG 146 (265)
T ss_pred HHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEEecC
Confidence 34667778888888877764 489999999999876644456777766544
No 280
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.61 E-value=2.4e+02 Score=18.21 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 29 NLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 29 ~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
+.|...+..|..-+.++....+.|+
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (112)
T cd01282 84 AVLRRELARIDRQIADLTRSRDRLD 108 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 281
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=21.46 E-value=68 Score=20.66 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=9.7
Q ss_pred cCCeeEEecCCCc
Q 034469 80 DARKVLVDIGTEN 92 (94)
Q Consensus 80 d~~kVlVdIGtGy 92 (94)
.+++.++|||.|.
T Consensus 21 ~~~~~vLDiGcG~ 33 (161)
T PF13489_consen 21 KPGKRVLDIGCGT 33 (161)
T ss_dssp TTTSEEEEESSTT
T ss_pred CCCCEEEEEcCCC
Confidence 4556788999885
No 282
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=21.39 E-value=3.4e+02 Score=19.87 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 29 NLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 29 ~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
+.+++.+...+...+++..|++.|+.
T Consensus 143 q~lqqel~~~e~RlarCr~AlekiE~ 168 (175)
T COG3923 143 QKLQQELEAYEQRLARCRHALEKIEN 168 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666654
No 283
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=21.31 E-value=1e+02 Score=17.32 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQT 24 (94)
Q Consensus 12 L~~~qL~~l~~ql 24 (94)
|+++|++...++|
T Consensus 2 LtpeQ~qHRE~qL 14 (40)
T PF11502_consen 2 LTPEQRQHRERQL 14 (40)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5666665554443
No 284
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.28 E-value=2e+02 Score=17.24 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al 52 (94)
++.+--.+.+..++.+...+..|+.+.+.....+..+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~ 39 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNL 39 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446667777777777777777777776664443
No 285
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=21.12 E-value=2.4e+02 Score=21.01 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
.+...+|...+.+|+.+++..+..|..|+.+.
T Consensus 130 ~~~~~el~~ek~kL~~q~~e~~e~lr~L~~~k 161 (221)
T PF10376_consen 130 ELKQQELEEEKRKLEKQVDEKEEELRRLKLVK 161 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44678999999999999999999888777654
No 286
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.11 E-value=3e+02 Score=21.97 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034469 33 DSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 33 ~s~~~L~~a~~~~~~~~~al~ 53 (94)
+.-..|..++.+|..+-..+.
T Consensus 277 ~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 277 SAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 333333444444444443333
No 287
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.08 E-value=4.2e+02 Score=23.29 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=15.7
Q ss_pred EecCCCeeee-----eEeccC---CeeEEecCC
Q 034469 66 VPLTASLYVP-----GTLDDA---RKVLVDIGT 90 (94)
Q Consensus 66 VPLt~slyV~-----gkl~d~---~kVlVdIGt 90 (94)
+.+|.-+||+ |++.+. +.+.|++|+
T Consensus 637 ~~~Gd~V~v~~~~~~g~v~~i~~~~~~~V~~g~ 669 (782)
T PRK00409 637 LKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGI 669 (782)
T ss_pred CCCCCEEEEccCCceEEEEEEcCCCeEEEEECC
Confidence 4456666665 455543 468888884
No 288
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=3e+02 Score=19.21 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTA 41 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a 41 (94)
.+|.+-+++++.+++.+......+...
T Consensus 84 ~~LEe~ke~l~k~i~~les~~e~I~~~ 110 (131)
T KOG1760|consen 84 DQLEEKKETLEKEIEELESELESISAR 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777666655543
No 289
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=21.06 E-value=2.5e+02 Score=18.93 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
+..+-+.|..+...|..++.|++.+.+-|+.+-
T Consensus 49 lkkQeeVl~et~~mlPD~~~RL~~a~~DLe~~l 81 (107)
T KOG3470|consen 49 LKKQEEVLKETRMMLPDSQRRLRKAYEDLESIL 81 (107)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 344556777888888888888888888888743
No 290
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=21.05 E-value=56 Score=23.47 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=10.6
Q ss_pred cCCeeEEecCCCcc
Q 034469 80 DARKVLVDIGTEND 93 (94)
Q Consensus 80 d~~kVlVdIGtGy~ 93 (94)
|.++.+||+|-|+.
T Consensus 96 ~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 96 DGERYLVDVGFGGP 109 (240)
T ss_dssp TTEEEEE-SSSTTC
T ss_pred CCEEEEEeccCCCc
Confidence 44599999999975
No 291
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=21.03 E-value=59 Score=20.56 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.9
Q ss_pred CCeeEEecCCCcc
Q 034469 81 ARKVLVDIGTEND 93 (94)
Q Consensus 81 ~~kVlVdIGtGy~ 93 (94)
.++|+|-||+|+.
T Consensus 45 ~~~VMVRVGGGW~ 57 (73)
T smart00243 45 RSTVMVRVGGGWE 57 (73)
T ss_pred CCeEEEEECCcHH
Confidence 3699999999973
No 292
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=21.02 E-value=1.3e+02 Score=18.10 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCeeeeeEeccCCee
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKV 84 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kV 84 (94)
.|+.+.|=|-.+.-++|++...|..
T Consensus 9 ~g~~V~VeLk~g~~~~G~L~~~D~~ 33 (70)
T cd01721 9 EGHIVTVELKTGEVYRGKLIEAEDN 33 (70)
T ss_pred CCCEEEEEECCCcEEEEEEEEEcCC
Confidence 4889999999999999999887653
No 293
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=20.94 E-value=3.8e+02 Score=20.29 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 23 ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
+|++.-..+..--..+..+..+|..|...|+.++
T Consensus 185 ~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 185 QLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444455668899999999999875
No 294
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=20.87 E-value=3.9e+02 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034469 26 LEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 26 qei~~l~~s~~~L~~a~ 42 (94)
++...|.+++..|..+.
T Consensus 31 ~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 31 EEFGSLKEQLKQLSEAN 47 (304)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33344555554444444
No 295
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.72 E-value=2.3e+02 Score=17.79 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
+.+++..++++|...++.+...+..|..+.
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV 62 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAV 62 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777776666666666655544
No 296
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=20.71 E-value=1.8e+02 Score=16.90 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034469 21 KEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~ 42 (94)
++||.+|+..|..++-.|-...
T Consensus 13 reqlrrelnsLR~~vhelctRs 34 (48)
T PF10845_consen 13 REQLRRELNSLRRSVHELCTRS 34 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888887776443
No 297
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.70 E-value=3.7e+02 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLN 36 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~ 36 (94)
-+|++|.+..+++.+|++.|..+-.
T Consensus 318 ~~~~~l~~~~~~~~~el~~L~~~~~ 342 (557)
T COG0497 318 VTIEDLLEYLDKIKEELAQLDNSEE 342 (557)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3566777777777777766665544
No 298
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=20.70 E-value=1.1e+02 Score=20.20 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=17.2
Q ss_pred CCeeeeeEecc-CCeeEEecCCCcc
Q 034469 70 ASLYVPGTLDD-ARKVLVDIGTEND 93 (94)
Q Consensus 70 ~slyV~gkl~d-~~kVlVdIGtGy~ 93 (94)
+-.||++++.. +-+++||=|+-+.
T Consensus 10 g~~~v~~~InG~~~~flVDTGAs~t 34 (121)
T TIGR02281 10 GHFYATGRVNGRNVRFLVDTGATSV 34 (121)
T ss_pred CeEEEEEEECCEEEEEEEECCCCcE
Confidence 34677777764 5688999998763
No 299
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=20.58 E-value=33 Score=22.68 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
+|...+.++-.+++.|..++..|+....++.+....|+.
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~ 41 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEE 41 (118)
T ss_dssp ---------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444444443
No 300
>smart00150 SPEC Spectrin repeats.
Probab=20.55 E-value=1.9e+02 Score=16.75 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
+.+..-.+.++.+++.....+..+.....++..
T Consensus 34 ~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 34 EALLKKHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444567777777777777776665555443
No 301
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=20.54 E-value=1.6e+02 Score=15.77 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
.|...+++|...-++|..-+++|+.
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666666666553
No 302
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.51 E-value=1.1e+02 Score=17.71 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=11.3
Q ss_pred eeeeEecc--CCeeEEecCCCc
Q 034469 73 YVPGTLDD--ARKVLVDIGTEN 92 (94)
Q Consensus 73 yV~gkl~d--~~kVlVdIGtGy 92 (94)
-|+|++.. ++.++|+++.|+
T Consensus 3 iV~g~V~~i~~~gi~v~l~~~i 24 (70)
T cd05702 3 LVKAKVKSVKPTQLNVQLADNV 24 (70)
T ss_pred EEEEEEEEEECCcEEEEeCCCc
Confidence 35566553 445677776654
No 303
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=20.49 E-value=51 Score=24.49 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=7.8
Q ss_pred CeeEEecCCC
Q 034469 82 RKVLVDIGTE 91 (94)
Q Consensus 82 ~kVlVdIGtG 91 (94)
.+=++|||||
T Consensus 68 ~~~~~DIGSG 77 (215)
T COG0357 68 AKRVLDIGSG 77 (215)
T ss_pred CCEEEEeCCC
Confidence 4557899998
No 304
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=20.43 E-value=3.2e+02 Score=20.46 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
+-+-.++++..|..=++.++++..++.+.|+..+.++.+
T Consensus 180 il~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07614 180 LLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKR 218 (223)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788888888888888888888888877776654
No 305
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.40 E-value=1.5e+02 Score=15.99 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQT 24 (94)
Q Consensus 11 ~L~~~qL~~l~~ql 24 (94)
.++..|+.+|+.|.
T Consensus 2 ~FT~~Ql~~L~~Qi 15 (37)
T PF08880_consen 2 PFTPAQLQELRAQI 15 (37)
T ss_pred CCCHHHHHHHHHHH
Confidence 35566666666554
No 306
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.40 E-value=2.8e+02 Score=18.61 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 19 AIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 19 ~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
.+...+++.++.+.+.+..|+..+..+...+..++.
T Consensus 78 ~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~ 113 (131)
T cd04786 78 ELLAALERKVADIEALEARLAQNKAQLLVLIDLIES 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666667777777777666666655555543
No 307
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.34 E-value=52 Score=25.51 Aligned_cols=29 Identities=14% Similarity=0.449 Sum_probs=24.4
Q ss_pred EEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 64 MLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 64 iLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
+.+..|.-=|+++....+..|+||+|+.|
T Consensus 205 vIsAvGkp~~i~~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 205 LIVAVGKPNFITADMVKEGAVVIDVGINH 233 (282)
T ss_pred EEEccCCcCcCCHHHcCCCcEEEEecccc
Confidence 44567777789999999999999999876
No 308
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=20.15 E-value=2.4e+02 Score=17.79 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
+.+|..+-+.|+.----|..++...+.+..=+..|...|..
T Consensus 16 l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~ 56 (81)
T COG1722 16 LAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQ 56 (81)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766667777777777776666666666653
No 309
>PRK00395 hfq RNA-binding protein Hfq; Provisional
Probab=20.11 E-value=1.3e+02 Score=19.22 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCeeeeeEeccCCeeEEecC
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIG 89 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kVlVdIG 89 (94)
+..++-|=|..|.=++|++..-|++.|=+.
T Consensus 18 ~~~~VtifL~NG~~l~G~I~~fD~ftVll~ 47 (79)
T PRK00395 18 ERVPVTIYLVNGIKLQGQIESFDNFVVLLR 47 (79)
T ss_pred cCCCEEEEEeCCcEEEEEEEEEccEEEEEE
Confidence 356888999999999999999998877654
No 310
>PF13514 AAA_27: AAA domain
Probab=20.02 E-value=4.2e+02 Score=23.97 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~ 50 (94)
..++.+|..-..+++.+++.+...+..+...+......++
T Consensus 888 ~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~ 927 (1111)
T PF13514_consen 888 ELDPDELEAELEELEEELEELEEELEELQEERAELEQELE 927 (1111)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655566666665555555555544433333333
No 311
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.00 E-value=2.4e+02 Score=17.56 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 19 AIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 19 ~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
.-.+++++|.+.++..-..|+.-++++
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555555544444
Done!