Query 034469
Match_columns 94
No_of_seqs 105 out of 281
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 99.9 3.7E-23 1.3E-27 140.0 11.0 80 13-93 2-81 (133)
2 2zdi_C Prefoldin subunit alpha 99.9 3.7E-22 1.3E-26 138.2 9.2 82 12-93 9-91 (151)
3 2zqm_A Prefoldin beta subunit 96.7 0.02 6.8E-07 36.6 9.1 60 14-77 8-67 (117)
4 1fxk_A Prefoldin; archaeal pro 96.1 0.08 2.7E-06 33.2 9.3 60 14-77 3-62 (107)
5 2zdi_C Prefoldin subunit alpha 92.1 0.42 1.4E-05 32.0 6.0 59 15-80 19-98 (151)
6 1gmj_A ATPase inhibitor; coile 91.4 0.98 3.4E-05 28.4 6.7 41 14-54 39-79 (84)
7 2w6a_A ARF GTPase-activating p 90.1 1.1 3.8E-05 26.6 5.7 32 14-45 29-60 (63)
8 1fxk_C Protein (prefoldin); ar 89.1 1.3 4.4E-05 28.7 6.2 66 15-80 11-88 (133)
9 3zbh_A ESXA; unknown function, 72.6 12 0.00041 21.9 6.3 33 12-44 9-41 (99)
10 3gwk_C SAG1039, putative uncha 69.3 15 0.00052 21.7 6.4 31 12-42 8-38 (98)
11 2vs0_A Virulence factor ESXA; 68.6 15 0.00051 21.4 6.4 33 11-43 5-37 (97)
12 4ioe_A Secreted protein ESXB; 67.7 16 0.00054 21.3 5.4 32 11-42 8-39 (93)
13 3m9b_A Proteasome-associated A 67.1 24 0.00081 26.1 7.1 34 23-56 58-95 (251)
14 2jo8_A Serine/threonine-protei 64.6 14 0.00049 21.0 4.3 31 9-39 7-41 (51)
15 1t3j_A Mitofusin 1; coiled coi 64.3 20 0.00069 22.8 5.5 31 16-46 44-74 (96)
16 3cvo_A Methyltransferase-like 62.2 1.7 5.9E-05 30.7 0.2 21 73-94 23-43 (202)
17 2e5q_A PHD finger protein 19; 57.4 15 0.0005 21.8 3.6 25 58-82 8-32 (63)
18 4hcz_A PHD finger protein 1; p 56.8 7.5 0.00026 22.7 2.3 22 59-80 5-26 (58)
19 4b28_A Metallopeptidase, famil 56.0 22 0.00074 27.8 5.5 17 77-93 308-325 (470)
20 1zke_A Hypothetical protein HP 54.1 7.1 0.00024 24.2 1.9 22 35-56 54-75 (83)
21 4dzo_A Mitotic spindle assembl 53.5 44 0.0015 21.8 5.9 42 15-56 4-45 (123)
22 3gpv_A Transcriptional regulat 53.2 25 0.00085 23.1 4.8 34 22-55 98-131 (148)
23 3ibp_A Chromosome partition pr 51.2 53 0.0018 24.8 6.7 46 12-57 10-55 (302)
24 3fpp_A Macrolide-specific effl 50.3 66 0.0023 22.9 7.9 8 62-69 154-161 (341)
25 2l5g_B Putative uncharacterize 50.2 30 0.001 18.9 4.9 37 12-48 2-38 (42)
26 2lme_A Adhesin YADA; trimeric 50.2 44 0.0015 20.9 6.9 49 25-73 15-63 (105)
27 1t2k_D Cyclic-AMP-dependent tr 48.9 34 0.0012 19.2 4.7 32 22-53 25-56 (61)
28 4i0x_B ESAT-6-like protein MAB 48.3 42 0.0014 20.2 5.0 31 12-42 11-41 (103)
29 3fx7_A Putative uncharacterize 47.4 48 0.0016 20.9 5.1 29 12-40 6-34 (94)
30 1fxk_A Prefoldin; archaeal pro 47.2 42 0.0014 20.2 4.9 39 17-55 3-41 (107)
31 3f1i_H Hepatocyte growth facto 45.8 56 0.0019 20.8 5.3 30 27-56 56-85 (98)
32 1e52_A Excinuclease ABC subuni 45.5 22 0.00074 20.8 3.1 45 7-53 12-56 (63)
33 1nkp_B MAX protein, MYC proto- 44.3 16 0.00056 21.7 2.5 23 17-39 52-74 (83)
34 2e5p_A Protein PHF1, PHD finge 44.0 15 0.00051 22.1 2.2 25 58-82 10-34 (68)
35 1hjb_A Ccaat/enhancer binding 43.8 48 0.0016 20.5 4.7 24 16-39 47-70 (87)
36 3rrk_A V-type ATPase 116 kDa s 43.3 93 0.0032 22.6 7.1 44 13-56 93-139 (357)
37 2no2_A HIP-I, huntingtin-inter 43.2 62 0.0021 20.5 6.9 38 16-53 55-95 (107)
38 3gpv_A Transcriptional regulat 42.3 69 0.0023 20.8 5.7 30 19-48 102-131 (148)
39 2j5u_A MREC protein; bacterial 42.0 46 0.0016 23.9 5.0 65 16-90 23-93 (255)
40 1gu4_A CAAT/enhancer binding p 40.9 54 0.0018 19.8 4.5 24 16-39 47-70 (78)
41 2yy0_A C-MYC-binding protein; 40.7 35 0.0012 19.1 3.4 28 13-40 20-47 (53)
42 1ci6_A Transcription factor AT 40.7 50 0.0017 18.8 4.8 23 17-39 35-57 (63)
43 2oa5_A Hypothetical protein BQ 40.0 24 0.00083 23.0 2.9 32 1-36 1-32 (110)
44 1r8e_A Multidrug-efflux transp 39.7 72 0.0025 22.0 5.7 32 22-53 82-113 (278)
45 2p2u_A HOST-nuclease inhibitor 39.4 85 0.0029 21.2 5.9 35 15-49 41-75 (171)
46 3kin_B Kinesin heavy chain; mo 38.9 74 0.0025 20.2 5.6 35 11-45 81-115 (117)
47 3s8i_A Protein DDI1 homolog 1; 38.6 19 0.00064 23.9 2.3 25 69-93 22-47 (148)
48 4i0x_A ESAT-6-like protein MAB 38.6 50 0.0017 19.6 4.2 25 14-38 2-26 (94)
49 3ra3_B P2F; coiled coil domain 38.3 37 0.0013 16.6 2.8 24 15-38 3-26 (28)
50 3viq_A SWI5-dependent recombin 38.1 64 0.0022 21.0 4.8 27 16-42 4-30 (122)
51 3gp4_A Transcriptional regulat 37.8 82 0.0028 20.4 6.4 27 21-47 90-116 (142)
52 2akf_A Coronin-1A; coiled coil 37.6 42 0.0014 17.0 5.0 26 23-48 3-28 (32)
53 3nmd_A CGMP dependent protein 37.4 67 0.0023 19.3 6.4 40 14-53 21-60 (72)
54 3iv1_A Tumor susceptibility ge 36.8 71 0.0024 19.4 6.8 33 17-49 16-48 (78)
55 1g6u_A Domain swapped dimer; d 36.5 53 0.0018 17.9 4.0 25 11-39 16-40 (48)
56 3err_A Fusion protein of micro 36.4 1.1E+02 0.0037 24.4 6.8 46 12-57 25-74 (536)
57 1aq5_A Matrilin-1, CMP, cartil 35.5 59 0.002 18.0 5.2 31 15-45 12-42 (47)
58 3g89_A Ribosomal RNA small sub 35.5 74 0.0025 22.0 5.2 11 81-91 80-90 (249)
59 1l8d_A DNA double-strand break 35.3 76 0.0026 19.3 6.6 43 12-54 57-99 (112)
60 2wg5_A General control protein 34.2 61 0.0021 20.4 4.1 13 23-35 11-23 (109)
61 2jee_A YIIU; FTSZ, septum, coi 34.1 81 0.0028 19.3 6.7 37 15-51 30-73 (81)
62 2er8_A Regulatory protein Leu3 34.1 17 0.0006 20.5 1.4 21 20-40 50-70 (72)
63 4hc4_A Protein arginine N-meth 33.5 16 0.00056 27.8 1.5 12 81-92 83-94 (376)
64 1tjl_A DNAK suppressor protein 33.2 1.1E+02 0.0037 20.4 5.9 29 10-38 30-58 (151)
65 1lwu_C Fibrinogen gamma chain; 33.1 1.5E+02 0.0053 22.2 6.9 37 17-53 17-53 (323)
66 2ztd_A Holliday junction ATP-d 33.1 24 0.00082 25.1 2.2 21 72-92 19-42 (212)
67 1jcd_A Major outer membrane li 33.0 67 0.0023 18.0 5.6 27 14-40 6-32 (52)
68 2aze_B Transcription factor E2 33.0 77 0.0026 20.0 4.5 27 14-40 15-41 (106)
69 2gr7_A Adhesin; trimeric autot 32.9 1E+02 0.0035 20.1 9.0 74 14-89 24-110 (129)
70 2ke4_A CDC42-interacting prote 31.3 97 0.0033 19.3 6.7 35 5-42 4-38 (98)
71 2zqm_A Prefoldin beta subunit 30.7 92 0.0032 18.9 5.9 43 14-56 5-47 (117)
72 3o48_A Mitochondria fission 1 30.7 33 0.0011 22.9 2.5 19 10-28 16-34 (134)
73 1fpo_A HSC20, chaperone protei 30.6 89 0.003 20.9 4.8 9 45-53 141-149 (171)
74 4dk0_A Putative MACA; alpha-ha 30.5 1E+02 0.0035 22.1 5.4 8 71-78 193-200 (369)
75 3pbf_A Pulmonary surfactant-as 30.3 45 0.0015 20.7 3.0 22 20-41 3-24 (148)
76 3gnl_A Uncharacterized protein 30.1 23 0.00079 25.4 1.8 13 80-92 20-32 (244)
77 1r8d_A Transcription activator 30.1 40 0.0014 20.6 2.7 19 24-42 80-98 (109)
78 2k48_A Nucleoprotein; viral pr 29.8 1.1E+02 0.0039 19.7 4.9 33 10-42 30-62 (107)
79 3fav_B ESAT-6, 6 kDa early sec 29.7 77 0.0026 18.3 3.9 22 14-35 7-28 (94)
80 3emo_C HIA (adhesin); transmem 29.4 1.3E+02 0.0046 20.3 9.6 79 11-90 54-144 (162)
81 1p9i_A Cortexillin I/GCN4 hybr 29.0 60 0.002 16.2 3.2 24 15-38 2-25 (31)
82 2wt7_B Transcription factor MA 28.8 1.1E+02 0.0037 19.0 5.9 33 22-54 51-83 (90)
83 3nr7_A DNA-binding protein H-N 28.8 1E+02 0.0035 18.8 7.2 45 10-54 22-66 (86)
84 2dyi_A Probable 16S rRNA-proce 28.7 46 0.0016 22.2 3.0 27 62-92 134-160 (162)
85 1zme_C Proline utilization tra 28.5 55 0.0019 18.0 2.9 19 22-40 47-65 (70)
86 3lec_A NADB-rossmann superfami 28.5 25 0.00087 25.0 1.7 14 79-92 19-32 (230)
87 2je6_I RRP4, exosome complex R 28.3 49 0.0017 23.8 3.3 30 65-94 62-100 (251)
88 3na7_A HP0958; flagellar bioge 28.3 1.6E+02 0.0053 20.7 6.4 25 18-42 24-48 (256)
89 1y8m_A FIS1; mitochondria, unk 27.7 39 0.0013 22.8 2.5 18 10-27 15-32 (144)
90 2eqj_A Metal-response element- 27.5 41 0.0014 20.0 2.3 24 59-82 15-38 (66)
91 3h9n_A Ribosome maturation fac 27.2 81 0.0028 21.3 4.1 34 60-93 139-172 (177)
92 3gp4_A Transcriptional regulat 27.2 1.3E+02 0.0044 19.4 6.4 34 21-54 83-116 (142)
93 1am9_A Srebp-1A, protein (ster 27.1 1E+02 0.0035 18.2 4.7 19 22-40 53-71 (82)
94 2xk0_A Polycomb protein PCL; t 26.7 59 0.002 19.5 2.9 30 58-87 16-47 (69)
95 3kqg_A Langerin, C-type lectin 26.6 1.1E+02 0.0037 19.6 4.5 22 22-43 19-40 (182)
96 3hh0_A Transcriptional regulat 26.3 1.4E+02 0.0046 19.4 5.5 22 26-47 87-108 (146)
97 1yzh_A TRNA (guanine-N(7)-)-me 26.2 30 0.001 22.9 1.7 13 80-92 40-52 (214)
98 1nlw_A MAD protein, MAX dimeri 26.0 1.1E+02 0.0037 18.2 4.6 26 14-39 49-74 (80)
99 3uo3_A J-type CO-chaperone JAC 25.4 1.2E+02 0.0041 20.6 4.7 38 15-53 121-158 (181)
100 1r8e_A Multidrug-efflux transp 25.0 1.7E+02 0.0058 20.1 6.2 35 16-50 83-117 (278)
101 2qyw_A Vesicle transport throu 24.1 1.2E+02 0.0043 18.6 4.3 17 38-54 51-67 (102)
102 2v7q_J ATPase inhibitor; ION t 23.8 22 0.00075 21.2 0.5 20 14-33 39-58 (66)
103 1rtm_1 Mannose-binding protein 23.5 1.3E+02 0.0043 18.7 4.3 20 21-40 6-25 (149)
104 3l51_B Structural maintenance 23.5 40 0.0014 22.3 1.9 25 45-69 52-76 (166)
105 3fx7_A Putative uncharacterize 23.4 1.4E+02 0.0049 18.7 5.2 25 15-39 16-40 (94)
106 3tee_A Flagella basal BODY P-r 23.3 1.3E+02 0.0043 21.1 4.6 35 55-89 165-199 (219)
107 4b4t_K 26S protease regulatory 23.2 2.6E+02 0.0088 21.5 7.9 14 78-91 102-115 (428)
108 1v5r_A Growth-arrest-specific 23.0 41 0.0014 21.4 1.8 29 65-93 31-65 (97)
109 3n7n_E Monopolin complex subun 22.9 18 0.00061 23.1 0.0 12 43-54 82-93 (95)
110 1ik9_A DNA repair protein XRCC 22.7 2E+02 0.007 20.1 6.9 33 21-53 141-173 (213)
111 2fca_A TRNA (guanine-N(7)-)-me 22.5 38 0.0013 22.6 1.6 13 80-92 37-49 (213)
112 2qtx_A Uncharacterized protein 22.4 76 0.0026 18.9 2.8 30 59-88 23-52 (71)
113 2i1a_A DNA damage-inducible pr 22.1 54 0.0019 20.7 2.3 25 69-93 24-49 (148)
114 1a93_B MAX protein, coiled coi 22.1 52 0.0018 17.1 1.8 16 24-39 12-27 (34)
115 3q0x_A Centriole protein; cent 22.0 2.2E+02 0.0076 20.4 5.9 26 22-47 188-213 (228)
116 2j8p_A Cleavage stimulation fa 21.8 52 0.0018 18.3 1.8 25 11-35 18-42 (49)
117 3dxy_A TRNA (guanine-N(7)-)-me 21.8 40 0.0014 22.9 1.7 12 81-92 34-45 (218)
118 1vf7_A Multidrug resistance pr 21.7 67 0.0023 23.5 3.0 23 11-33 73-95 (369)
119 2z0s_A Probable exosome comple 21.7 55 0.0019 23.1 2.4 22 73-94 69-92 (235)
120 1dd4_C 50S ribosomal protein L 21.4 64 0.0022 17.1 2.1 20 9-28 10-29 (40)
121 3ghg_A Fibrinogen alpha chain; 21.2 1.9E+02 0.0066 23.6 5.7 25 26-50 131-155 (562)
122 1buu_A Protein (mannose-bindin 20.9 1.5E+02 0.0051 19.0 4.3 20 21-40 25-44 (168)
123 3rva_A Organophosphorus acid a 20.7 1.9E+02 0.0066 22.2 5.5 31 63-93 213-250 (451)
124 2lf0_A Uncharacterized protein 20.5 1.6E+02 0.0055 19.4 4.3 24 21-44 38-61 (123)
125 3ckk_A TRNA (guanine-N(7)-)-me 20.4 45 0.0016 22.9 1.7 14 79-92 44-57 (235)
126 2gpy_A O-methyltransferase; st 20.2 54 0.0018 21.8 2.0 32 62-93 198-229 (233)
127 3fav_A ESAT-6-like protein ESX 20.2 1E+02 0.0035 18.1 3.2 8 14-21 9-16 (101)
128 3efg_A Protein SLYX homolog; x 20.2 1.5E+02 0.0051 17.6 5.8 43 11-53 6-48 (78)
129 3c3g_A Alpha/beta peptide with 20.0 1E+02 0.0036 15.8 3.2 18 15-32 10-27 (33)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.90 E-value=3.7e-23 Score=140.01 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
.+++|.+++++|++++++++++++.|+.++.+|..|+++|+.|++ .++.++|||||+++||||++.|+++|+|+||+||
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~ 80 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV 80 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Confidence 489999999999999999999999999999999999999999986 6689999999999999999999999999999999
Q ss_pred c
Q 034469 93 D 93 (94)
Q Consensus 93 ~ 93 (94)
|
T Consensus 81 ~ 81 (133)
T 1fxk_C 81 A 81 (133)
T ss_dssp E
T ss_pred E
Confidence 8
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.87 E-value=3.7e-22 Score=138.17 Aligned_cols=82 Identities=18% Similarity=0.352 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCeEEEecCCCeeeeeEeccCCeeEEecCC
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRP-QGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~-~~~eiLVPLt~slyV~gkl~d~~kVlVdIGt 90 (94)
-.+++|.+++++|++++++|+++++.|+.|.+++.++.++++.++..+ ++.++|||||+++||||++.|+++|+||||+
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~ 88 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGS 88 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCC
Confidence 457999999999999999999999999999999999999999888766 7899999999999999999999999999999
Q ss_pred Ccc
Q 034469 91 END 93 (94)
Q Consensus 91 Gy~ 93 (94)
|||
T Consensus 89 g~~ 91 (151)
T 2zdi_C 89 GYA 91 (151)
T ss_dssp TEE
T ss_pred CeE
Confidence 998
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=96.70 E-value=0.02 Score=36.58 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeE
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGT 77 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gk 77 (94)
.+++..-.++++++++.+..++..+..-..+...+.+.|+.+. ++..++.|+| ++||+-.
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~---~d~~vy~~iG-~vfv~~~ 67 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP---DDAVVYKTVG-TLIVKTT 67 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---TTCCEEEEET-TEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCcHhHHHhh-HHHhhcc
Confidence 3566666688899999999999998877777777777666664 4677999999 5666543
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=96.13 E-value=0.08 Score=33.21 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeE
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGT 77 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gk 77 (94)
++++..-.++++++++.+..+++.++.-..+...+.+.|+.+. ++..++.++| ++||+-.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~---~d~~vy~~iG-~vfv~~~ 62 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA---DDAEVYKSSG-NILIRVA 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---TTCCEEEEET-TEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCchHHHHHh-HHHHhcc
Confidence 5677777788999999999999998877777777777777664 4667999998 4566543
No 5
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=92.10 E-value=0.42 Score=32.03 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc-CC-----------------CCCCeEEEecCCCee
Q 034469 15 EQLKAIKEQTDLEVNLL---QDSLNNIRTATSRLESASTALHDLS-LR-----------------PQGAKMLVPLTASLY 73 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l---~~s~~~L~~a~~~~~~~~~al~~l~-~~-----------------~~~~eiLVPLt~sly 73 (94)
++|...-+.+.+.++.| ...+. ++..++++|+.++ .. .+...|+|.||++.|
T Consensus 19 qql~~~~~~l~~~~~~L~~a~~~~~-------e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~ 91 (151)
T 2zdi_C 19 QVLQAQAQILAQNLELLNLAKAEVQ-------TVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYA 91 (151)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeE
Confidence 34444446777777777 55554 4555566666554 21 234679999999999
Q ss_pred eeeEecc
Q 034469 74 VPGTLDD 80 (94)
Q Consensus 74 V~gkl~d 80 (94)
|.=.+.+
T Consensus 92 vE~~~~e 98 (151)
T 2zdi_C 92 VERSIDE 98 (151)
T ss_dssp EEEEHHH
T ss_pred EEecHHH
Confidence 9765543
No 6
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=91.41 E-value=0.98 Score=28.40 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
.+||..|++.++.|+++-...|..|+.++.+....+.-|+.
T Consensus 39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999999999888877766666553
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=90.15 E-value=1.1 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
++||..+...+.+|+..++.-++.|+...+.+
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 68888999999999999999998888766544
No 8
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=89.13 E-value=1.3 Score=28.74 Aligned_cols=66 Identities=8% Similarity=0.177 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccC----------CCCCCeEEEecCCCeeeeeEecc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST--ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDD 80 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~--al~~l~~----------~~~~~eiLVPLt~slyV~gkl~d 80 (94)
+++...-+.+.++++.+...+..++.+...+..-.. ..+.+-| -.+...|+|.||.+.||.=.+.+
T Consensus 11 q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~e 88 (133)
T 1fxk_C 11 NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFED 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHH
Confidence 566666678888888888888888877665544331 1111101 12345799999999999765543
No 9
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=72.58 E-value=12 Score=21.94 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSR 44 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~ 44 (94)
++|++|...-.++....+.++..+..|+.....
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888877777777777777766654433
No 10
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=69.30 E-value=15 Score=21.73 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
++|++|...-.++....+.++..+..|+...
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~ 38 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQ 38 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888777777776666666666544
No 11
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=68.56 E-value=15 Score=21.41 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATS 43 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~ 43 (94)
..+|++|.+.-.++......++..+..|+....
T Consensus 5 ~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~ 37 (97)
T 2vs0_A 5 KMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQG 37 (97)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888887777777777776666665443
No 12
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=67.68 E-value=16 Score=21.32 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
.++|++|...-.++....+.++..+..|+...
T Consensus 8 ~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~ 39 (93)
T 4ioe_A 8 KITPEELERIAGNFKNAAGEAQSQINRLEGDI 39 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888777777777777776666543
No 13
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=67.11 E-value=24 Score=26.07 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc
Q 034469 23 QTDLEVNLLQDSLN----NIRTATSRLESASTALHDLS 56 (94)
Q Consensus 23 ql~qei~~l~~s~~----~L~~a~~~~~~~~~al~~l~ 56 (94)
+++.+++.|++... .|+.+..++...++-|+.|+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444 44455555666666666664
No 14
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=64.57 E-value=14 Score=20.96 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIKE----QTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 9 l~~L~~~qL~~l~~----ql~qei~~l~~s~~~L~ 39 (94)
|.+||.++|.+.-. .+++|++.+...++.=+
T Consensus 7 Lk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KR 41 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQSKR 41 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhH
Confidence 45678888877664 55566666666665533
No 15
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=64.31 E-value=20 Score=22.77 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~ 46 (94)
+.-...+.++.||..|...++.|..++.++.
T Consensus 44 ~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 44 QVDMTQKHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444567777888888888888777776553
No 16
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=62.21 E-value=1.7 Score=30.65 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=14.1
Q ss_pred eeeeEeccCCeeEEecCCCccC
Q 034469 73 YVPGTLDDARKVLVDIGTENDG 94 (94)
Q Consensus 73 yV~gkl~d~~kVlVdIGtGy~~ 94 (94)
|+..++. ..+.+++|||||++
T Consensus 23 ~L~~~l~-~a~~VLEiGtGyST 43 (202)
T 3cvo_A 23 ALRMAYE-EAEVILEYGSGGST 43 (202)
T ss_dssp HHHHHHH-HCSEEEEESCSHHH
T ss_pred HHHHHhh-CCCEEEEECchHHH
Confidence 3333444 45788999999973
No 17
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.37 E-value=15 Score=21.82 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCCCeEEEecCCCeeeeeEeccCC
Q 034469 58 RPQGAKMLVPLTASLYVPGTLDDAR 82 (94)
Q Consensus 58 ~~~~~eiLVPLt~slyV~gkl~d~~ 82 (94)
-.+|.++|+-=+.++|-+|+|...+
T Consensus 8 f~eGqdVLarWsDGlfYlgtV~kV~ 32 (63)
T 2e5q_A 8 LTEGQYVLCRWTDGLYYLGKIKRVS 32 (63)
T ss_dssp CCTTCEEEEECTTSCEEEEEECCCC
T ss_pred eecCCEEEEEecCCCEEEEEEEEEe
Confidence 3568999999999999999998765
No 18
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=56.83 E-value=7.5 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.1
Q ss_pred CCCCeEEEecCCCeeeeeEecc
Q 034469 59 PQGAKMLVPLTASLYVPGTLDD 80 (94)
Q Consensus 59 ~~~~eiLVPLt~slyV~gkl~d 80 (94)
.+|.++|+--+.++|-+|+|..
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~ 26 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKK 26 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEE
Confidence 4688999999999999999976
No 19
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114}
Probab=55.98 E-value=22 Score=27.81 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=13.0
Q ss_pred EeccCCeeEEecCC-Ccc
Q 034469 77 TLDDARKVLVDIGT-END 93 (94)
Q Consensus 77 kl~d~~kVlVdIGt-Gy~ 93 (94)
+|.+.|-|+||+|. ||.
T Consensus 308 ~l~~Gd~vliD~G~~g~~ 325 (470)
T 4b28_A 308 VCQRNEIISFDTDLVGAY 325 (470)
T ss_dssp BCCSSEEEEEECCEECGG
T ss_pred cccCCCEEEEEecccccC
Confidence 57778899999986 453
No 20
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=54.14 E-value=7.1 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 034469 35 LNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 35 ~~~L~~a~~~~~~~~~al~~l~ 56 (94)
++++..-..++.++++||+.+|
T Consensus 54 ~~QideeV~~LKe~IdaLNK~K 75 (83)
T 1zke_A 54 FTQLSEEVERLKELINALNKIK 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555567777777777776
No 21
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=53.47 E-value=44 Score=21.76 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
.++.+++.++++.-...+.--+..+....+|++++-+|=.++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGyk 45 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQ 45 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeE
Confidence 455555544433322222222333346688998888887654
No 22
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=53.17 E-value=25 Score=23.06 Aligned_cols=34 Identities=3% Similarity=0.053 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
+-+++.++.+.+.+..|+.....+...++.++..
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666665555555555555543
No 23
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=51.21 E-value=53 Score=24.84 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~ 57 (94)
....++.+.+..+.++.+.|++.+++|..-.-....+.++|+.|..
T Consensus 10 ~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~e 55 (302)
T 3ibp_A 10 DSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSE 55 (302)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 3457778888899999999999999999988888889999988764
No 24
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.30 E-value=66 Score=22.93 Aligned_cols=8 Identities=13% Similarity=0.779 Sum_probs=3.4
Q ss_pred CeEEEecC
Q 034469 62 AKMLVPLT 69 (94)
Q Consensus 62 ~eiLVPLt 69 (94)
..|.-|..
T Consensus 154 ~~i~AP~~ 161 (341)
T 3fpp_A 154 TRIVAPMA 161 (341)
T ss_dssp SEEECSSS
T ss_pred CEEECCCC
Confidence 34444443
No 25
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.22 E-value=30 Score=18.89 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~ 48 (94)
++-++|.+-...++.||+--.+.|..|+.-+..+.++
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446788888889999998888888888777666554
No 26
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=50.15 E-value=44 Score=20.89 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCee
Q 034469 25 DLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73 (94)
Q Consensus 25 ~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~sly 73 (94)
.+.++.|...+..++.-..+-..+-.|+..|-.........|-.+.+-|
T Consensus 15 ~~~~~~l~~~i~~~~~~~~~g~A~a~A~a~lp~~~~~gk~~v~~g~G~y 63 (105)
T 2lme_A 15 AHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGY 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEEecc
Confidence 3445555555555555444555556666665222222345566666665
No 27
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.85 E-value=34 Score=19.22 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
..|+.+++.|+..-..|+.-...+..-...|+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 28
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=48.27 E-value=42 Score=20.24 Aligned_cols=31 Identities=3% Similarity=0.289 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
.++++|...-..+......|+..+..|+...
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v 41 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRA 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444444444444444333
No 29
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=47.38 E-value=48 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
.+|++|..+.++|++=.+.|++....|..
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~ 34 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSN 34 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777776666666665555555544
No 30
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=47.18 E-value=42 Score=20.25 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l 55 (94)
|+++.++|..=-+.++.-..+++.......++..+++.|
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333333333334444444444555555444
No 31
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=45.75 E-value=56 Score=20.82 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 27 EVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 27 ei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
+.+.....++.|+.-.+.+.+|..||+.|.
T Consensus 56 ~~ee~R~~yE~LQDkL~qi~eAR~ALdaLR 85 (98)
T 3f1i_H 56 QLDERRLYYEGLQDKLAQIRDARGALSALR 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777777777777777877663
No 32
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=45.52 E-value=22 Score=20.77 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 7 i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
.+...+++.++..+..+|++++......+.-=+.| +|++-+.+|+
T Consensus 12 ~~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA--~lRD~I~~L~ 56 (63)
T 1e52_A 12 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA--QIRDQLHQLR 56 (63)
T ss_dssp TSSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHT--THHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHH--HHHHHHHHHH
Confidence 46677888899999999999999887776544433 3555555554
No 33
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.25 E-value=16 Score=21.71 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~ 39 (94)
|....+.++.|++.|......|+
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 34
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.98 E-value=15 Score=22.06 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.6
Q ss_pred CCCCCeEEEecCCCeeeeeEeccCC
Q 034469 58 RPQGAKMLVPLTASLYVPGTLDDAR 82 (94)
Q Consensus 58 ~~~~~eiLVPLt~slyV~gkl~d~~ 82 (94)
-.+|.++|.-=+.++|-+|+|+..+
T Consensus 10 f~eGqdVLarWsDGlfYlGtV~kV~ 34 (68)
T 2e5p_A 10 LWEGQDVLARWTDGLLYLGTIKKVD 34 (68)
T ss_dssp CCTTCEEEEECTTSSEEEEEEEEEE
T ss_pred cccCCEEEEEecCCcEEEeEEEEEe
Confidence 4578999999999999999998644
No 35
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.78 E-value=48 Score=20.46 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
+|.....+|..+|+.|+..+..|+
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554444
No 36
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=43.26 E-value=93 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcc
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA---STALHDLS 56 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~---~~al~~l~ 56 (94)
+++++...-..+.+++..+...+..|+....++... ++.|..+.
T Consensus 93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~ 139 (357)
T 3rrk_A 93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALA 139 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 478888888999999999999999999999999998 66666554
No 37
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=43.16 E-value=62 Score=20.53 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=19.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDL---EVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 16 qL~~l~~ql~q---ei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
++..++++|.. |++.|+..++.+...-.++...+.+|.
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 444555555555555555555554444
No 38
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=42.35 E-value=69 Score=20.84 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 19 AIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (94)
Q Consensus 19 ~l~~ql~qei~~l~~s~~~L~~a~~~~~~~ 48 (94)
...++++++++.|+..+..|......|.+.
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555444443
No 39
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=41.98 E-value=46 Score=23.88 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEecc------CCeeEEecC
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDD------ARKVLVDIG 89 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d------~~kVlVdIG 89 (94)
.|.+..++|.+|+..|......++....+...-.+-|+ ++.. +...-|+.|++.. .+.+++|.|
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~-~~~~---------~~~~~~i~A~VI~~~~~~~~~~i~IdkG 92 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD-ITDS---------IRDYDPLNASVISRNPTNWNDQVEIDKG 92 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCSC---------TTCEEEEEEEEEECCGGGTTTEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cccc---------cccCceEEEEEEEECCCCcceEEEEeCC
Confidence 34444567777777777777766665555443322222 2211 0122455666643 457899988
Q ss_pred C
Q 034469 90 T 90 (94)
Q Consensus 90 t 90 (94)
+
T Consensus 93 s 93 (255)
T 2j5u_A 93 S 93 (255)
T ss_dssp G
T ss_pred c
Confidence 6
No 40
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.86 E-value=54 Score=19.78 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
+|.....+|..+++.|+..+..|+
T Consensus 47 ~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.72 E-value=35 Score=19.10 Aligned_cols=28 Identities=7% Similarity=0.163 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
+.+-|..-...|.++++.|...++.|+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666654
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.67 E-value=50 Score=18.82 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~ 39 (94)
|..-...|..+++.|+..+..|+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 43
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=40.03 E-value=24 Score=22.99 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLN 36 (94)
Q Consensus 1 m~~~~~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~ 36 (94)
||++++ ++++++|++.-++|+=|=..|...+.
T Consensus 1 Mas~r~----~~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 1 MASKKP----DKTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp -----C----CSSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776666 78999999999888888888887775
No 44
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=39.66 E-value=72 Score=22.04 Aligned_cols=32 Identities=3% Similarity=0.078 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
+-|+++++.+.+.+..|+.....+...++.++
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444444444
No 45
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=39.45 E-value=85 Score=21.22 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS 49 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~ 49 (94)
.++..+++.+.+++.-+.+++..|......|-++.
T Consensus 41 ~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 41 EAIDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788888888888888888888888887665
No 46
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=38.95 E-value=74 Score=20.24 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
.++.+++....++...+++.|...++.|+.-..++
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888887655544
No 47
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=38.58 E-value=19 Score=23.86 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.2
Q ss_pred CCCeeeeeEecc-CCeeEEecCCCcc
Q 034469 69 TASLYVPGTLDD-ARKVLVDIGTEND 93 (94)
Q Consensus 69 t~slyV~gkl~d-~~kVlVdIGtGy~ 93 (94)
+..+||++++.. +-+++||=|+.+.
T Consensus 22 ~~~l~v~~~Ing~~v~~LVDTGAs~s 47 (148)
T 3s8i_A 22 VTMLYINCKVNGHPLKAFVDSGAQMT 47 (148)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCSSC
T ss_pred cCEEEEEEEECCEEEEEEEeCCCCcE
Confidence 456899999865 6799999998764
No 48
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=38.56 E-value=50 Score=19.57 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L 38 (94)
|++|...-..+..-.+.|+..+..|
T Consensus 2 peel~~~a~~~~~~~~~i~~~l~~l 26 (94)
T 4i0x_A 2 IDEVGALSKFAASLADQMRAGSNSL 26 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333333333
No 49
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.25 E-value=37 Score=16.60 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L 38 (94)
+.|.+-.-.|.||+..|.-.+..|
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 345555566667766665555443
No 50
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=38.07 E-value=64 Score=21.01 Aligned_cols=27 Identities=33% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
+|..-+..|+.+++.+...+..|+.|.
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~ 30 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETAR 30 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888899999999988888875
No 51
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.78 E-value=82 Score=20.39 Aligned_cols=27 Identities=7% Similarity=0.316 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 21 KEQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
.++++++++.|+.....|......|..
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444443
No 52
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.64 E-value=42 Score=17.02 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 23 QTDLEVNLLQDSLNNIRTATSRLESA 48 (94)
Q Consensus 23 ql~qei~~l~~s~~~L~~a~~~~~~~ 48 (94)
.|++++..|+.-.+.|+....++.+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555443
No 53
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.42 E-value=67 Score=19.30 Aligned_cols=40 Identities=8% Similarity=0.099 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
+++|+.+-+.-.+|+......|..|.......++-+.-|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766677777777777766666666655555543
No 54
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.85 E-value=71 Score=19.44 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS 49 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~ 49 (94)
|.+.-.|.+.|++.|...=+.|+...+++.+-+
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi 48 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444445555555555555555555555554433
No 55
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.53 E-value=53 Score=17.87 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
-.+|++|..+ +.|++.|...+..|+
T Consensus 16 gfspeelaal----eselqalekklaalk 40 (48)
T 1g6u_A 16 GFSPEELAAL----ESELQALEKKLAALK 40 (48)
T ss_dssp TCSHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4567777654 445555555555554
No 56
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=36.43 E-value=1.1e+02 Score=24.45 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccC
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSL----NNIRTATSRLESASTALHDLSL 57 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~----~~L~~a~~~~~~~~~al~~l~~ 57 (94)
..++++..++++++.+...++..= ..|..|.=.+.+|.+||+.|++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k 74 (536)
T 3err_A 25 LDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKK 74 (536)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 567788888888877666555433 3677777888889999998763
No 57
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=35.47 E-value=59 Score=18.05 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~ 45 (94)
+-|..++.+....++.|++.+..+......+
T Consensus 12 Eslv~FQ~~v~~~l~~Lt~kL~~vt~rle~l 42 (47)
T 1aq5_A 12 KSIVKFQTKVEELINTLQQKLEAVAKRIEAL 42 (47)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999988665544433
No 58
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=35.47 E-value=74 Score=22.00 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=8.4
Q ss_pred CCeeEEecCCC
Q 034469 81 ARKVLVDIGTE 91 (94)
Q Consensus 81 ~~kVlVdIGtG 91 (94)
...-++|||||
T Consensus 80 ~~~~vLDiG~G 90 (249)
T 3g89_A 80 GPLRVLDLGTG 90 (249)
T ss_dssp SSCEEEEETCT
T ss_pred CCCEEEEEcCC
Confidence 45568899988
No 59
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.34 E-value=76 Score=19.33 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
+++.....+...++.++..+...+..|+.....+..-++.+..
T Consensus 57 l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 57 LTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566677777777777777777777766666655543
No 60
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.17 E-value=61 Score=20.37 Aligned_cols=13 Identities=23% Similarity=0.074 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 034469 23 QTDLEVNLLQDSL 35 (94)
Q Consensus 23 ql~qei~~l~~s~ 35 (94)
||+.+++.+...+
T Consensus 11 ~l~~~~~~l~~~i 23 (109)
T 2wg5_A 11 QLEDKVEELLSKN 23 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.15 E-value=81 Score=19.30 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNL-------LQDSLNNIRTATSRLESASTA 51 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~-------l~~s~~~L~~a~~~~~~~~~a 51 (94)
++|.+-...|.++.+. |....++|+.-+..+.+-+++
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 333444444444444444444
No 62
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=34.10 E-value=17 Score=20.48 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034469 20 IKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 20 l~~ql~qei~~l~~s~~~L~~ 40 (94)
-..+|+++++.|...+..|..
T Consensus 50 ~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 50 RNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777777766554
No 63
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=33.48 E-value=16 Score=27.78 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=9.1
Q ss_pred CCeeEEecCCCc
Q 034469 81 ARKVLVDIGTEN 92 (94)
Q Consensus 81 ~~kVlVdIGtGy 92 (94)
.+++++|||+|-
T Consensus 83 ~~k~VLDvG~Gt 94 (376)
T 4hc4_A 83 RGKTVLDVGAGT 94 (376)
T ss_dssp TTCEEEEETCTT
T ss_pred CCCEEEEeCCCc
Confidence 346789999984
No 64
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=33.25 E-value=1.1e+02 Score=20.43 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L 38 (94)
+-++..||..+++.|.++.+.|...+...
T Consensus 30 ~~M~~~ql~~fr~~L~~~k~eL~~~l~~~ 58 (151)
T 1tjl_A 30 EYMNEAQLAHFRRILEAWRNQLRDEVDRT 58 (151)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999988888776544
No 65
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.11 E-value=1.5e+02 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 17 L~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
|+.+-...+.+++.|+..+..++..+.++...+..+.
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555555544444444433333
No 66
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=33.07 E-value=24 Score=25.05 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=17.3
Q ss_pred eeeeeEecc--CCeeEEecCC-Cc
Q 034469 72 LYVPGTLDD--ARKVLVDIGT-EN 92 (94)
Q Consensus 72 lyV~gkl~d--~~kVlVdIGt-Gy 92 (94)
.|++|++.. ++.+++|+|. ||
T Consensus 19 ~~l~G~v~~~~~~~~Vi~v~gVGy 42 (212)
T 2ztd_A 19 ASVRGEVLEVALDHVVIEAAGVGY 42 (212)
T ss_dssp CEEEEEEEEECSSEEEEEETTEEE
T ss_pred eEEEEEEEEEECCEEEEEECCeeE
Confidence 689999975 7889999976 54
No 67
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.02 E-value=67 Score=18.01 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
+.+|..--++|-.+++.|+..+..|+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666655555554
No 68
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.01 E-value=77 Score=20.00 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~ 40 (94)
+.+|...-+.|++.+.++++++..+..
T Consensus 15 l~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 15 LRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555556677777777777766653
No 69
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=32.92 E-value=1e+02 Score=20.10 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=44.0
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeEEEecCCCee---------eeeEecc
Q 034469 14 VEQLKAIK---EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL-RPQGAKMLVPLTASLY---------VPGTLDD 80 (94)
Q Consensus 14 ~~qL~~l~---~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~-~~~~~eiLVPLt~sly---------V~gkl~d 80 (94)
-.||..+. .++++.++.|+..+..++.-...=..+--|+..|-. ...++. +|-++.+.| +. ++.+
T Consensus 24 g~QL~~v~~~v~~~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LPq~~~pGk~-~v~~g~G~Y~GqsAvAvG~s-~~s~ 101 (129)
T 2gr7_A 24 GSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMPGKS-MVAIAGSSYQGQNGLAIGVS-RISD 101 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSTTCE-EEEEEEEEETTEEEEEEEEE-EECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCE-EEEEEEEecCCCcEEEEEEE-EEcC
Confidence 34444444 456678888888888877665555666777777742 234554 488888777 32 4555
Q ss_pred CCeeEEecC
Q 034469 81 ARKVLVDIG 89 (94)
Q Consensus 81 ~~kVlVdIG 89 (94)
..|+++-+|
T Consensus 102 ngk~~~k~s 110 (129)
T 2gr7_A 102 NGKVIIRLS 110 (129)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 556665544
No 70
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.31 E-value=97 Score=19.32 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=24.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 5 ~~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
..-|.+.|||+| .++.|++.|+.|+..|+.-..++
T Consensus 4 ~~~d~s~LPpeq---RkkkL~~Ki~el~~ei~ke~~~r 38 (98)
T 2ke4_A 4 MTEDFSHLPPEQ---QRKRLQQQLEERSRELQKEVDQR 38 (98)
T ss_dssp CCSCSSSSCHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccCCHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899976 56677777777777776655443
No 71
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.75 E-value=92 Score=18.90 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~ 56 (94)
++++.++..+|..=-+.++.-..+++.......++..+++.|.
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555555555444555555555555566666666666664
No 72
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=30.70 E-value=33 Score=22.89 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLEV 28 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei 28 (94)
+.++++||..+++|++.|.
T Consensus 16 ~~~~~eeL~~l~~qy~~E~ 34 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEG 34 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 3589999999999999983
No 73
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=30.60 E-value=89 Score=20.95 Aligned_cols=9 Identities=11% Similarity=0.235 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 034469 45 LESASTALH 53 (94)
Q Consensus 45 ~~~~~~al~ 53 (94)
+..|...+.
T Consensus 141 ~~~A~~~~~ 149 (171)
T 1fpo_A 141 WDAAADTCR 149 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 74
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.53 E-value=1e+02 Score=22.10 Aligned_cols=8 Identities=0% Similarity=0.198 Sum_probs=3.5
Q ss_pred CeeeeeEe
Q 034469 71 SLYVPGTL 78 (94)
Q Consensus 71 slyV~gkl 78 (94)
.++|.+.+
T Consensus 193 ~~~v~~~v 200 (369)
T 4dk0_A 193 KMRIKPEI 200 (369)
T ss_dssp SCEEEECC
T ss_pred eEEEEEEE
Confidence 44444443
No 75
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=30.30 E-value=45 Score=20.74 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034469 20 IKEQTDLEVNLLQDSLNNIRTA 41 (94)
Q Consensus 20 l~~ql~qei~~l~~s~~~L~~a 41 (94)
+.+.|+++++.|+.++..++..
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~ 24 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGV 24 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655544
No 76
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=30.11 E-value=23 Score=25.44 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=10.3
Q ss_pred cCCeeEEecCCCc
Q 034469 80 DARKVLVDIGTEN 92 (94)
Q Consensus 80 d~~kVlVdIGtGy 92 (94)
.+...++|||||.
T Consensus 20 ~~g~~VlDIGtGs 32 (244)
T 3gnl_A 20 TKNERIADIGSDH 32 (244)
T ss_dssp CSSEEEEEETCST
T ss_pred CCCCEEEEECCcc
Confidence 4557789999986
No 77
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=30.06 E-value=40 Score=20.65 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 24 TDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 24 l~qei~~l~~s~~~L~~a~ 42 (94)
|+++++.+.+.+..|+...
T Consensus 80 l~~~~~~l~~~i~~l~~~~ 98 (109)
T 1r8d_A 80 LQSQKEILMKKKQRMDEMI 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 78
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.82 E-value=1.1e+02 Score=19.66 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
..+.+..|..++..+.+.=..|..+-+.|+.|.
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555444444444444444433
No 79
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=29.70 E-value=77 Score=18.28 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSL 35 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~ 35 (94)
+++|...-..+......|+..+
T Consensus 7 ~~~l~~~a~~~~~~~~~i~~~l 28 (94)
T 3fav_B 7 FAGIEAAASAIQGNVTSIHSLL 28 (94)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333333333333333
No 80
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=29.44 E-value=1.3e+02 Score=20.34 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeEEEecCCCee-------ee-eEe
Q 034469 11 KMSVEQLKAIKEQ---TDLEVNLLQDSLNNIRTATSRLESASTALHDLSL-RPQGAKMLVPLTASLY-------VP-GTL 78 (94)
Q Consensus 11 ~L~~~qL~~l~~q---l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~-~~~~~eiLVPLt~sly-------V~-gkl 78 (94)
-.+..||....++ +...+..|+..+..++.....=..+-.|+-.|-. ...++ ..|-++.+-| |- .++
T Consensus 54 AvN~~Ql~~~~~~v~n~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LP~~~~pGk-~~va~G~G~Y~GqsAvAvG~s~~ 132 (162)
T 3emo_C 54 AINGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMPGK-SMVAIAGSSYQGQNGLAIGVSRI 132 (162)
T ss_dssp BCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSTTC-EEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccHHHHhhhhhhhhhhHHHHHHHHhhhhhhHHhHHHHHHHHHHhccCCCcCCCCC-EEEEEEEEeeCCCcEEEEEeeee
Confidence 3556788877654 4456777777777666554444566677777721 22454 4677777766 11 246
Q ss_pred ccCCeeEEecCC
Q 034469 79 DDARKVLVDIGT 90 (94)
Q Consensus 79 ~d~~kVlVdIGt 90 (94)
.+..++++.+|.
T Consensus 133 s~N~~~~~k~s~ 144 (162)
T 3emo_C 133 SDNGKVIIRLSG 144 (162)
T ss_dssp CTTSSEEEEEEE
T ss_pred ccCCcEEEEEEE
Confidence 677777766554
No 81
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=29.05 E-value=60 Score=16.18 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNI 38 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L 38 (94)
+||.++--.++.|-..|....+.|
T Consensus 2 dqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777666665554
No 82
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.79 E-value=1.1e+02 Score=19.04 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
..|+.+...|...++.|+....++....++++.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777666666653
No 83
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=28.75 E-value=1e+02 Score=18.82 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
-++++++|..+...|..=++.-.......+.++..-.+-++.+..
T Consensus 22 rel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e 66 (86)
T 3nr7_A 22 RESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 66 (86)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999988888888887777777666555555544
No 84
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=28.71 E-value=46 Score=22.23 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=21.9
Q ss_pred CeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTEN 92 (94)
Q Consensus 62 ~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy 92 (94)
+++|||... -||+ +. ..++.||.-.|+
T Consensus 134 ~e~LIPfv~-~~V~--VD-~~~I~v~~p~gl 160 (162)
T 2dyi_A 134 AERLVPLQA-PYVR--VE-EGSIHVDPIPGL 160 (162)
T ss_dssp TTEEEETTC-TTEE--EC-SSCEEECCCTTT
T ss_pred cEEEEeccc-cEEE--EE-CCEEEEeCCchh
Confidence 799999986 6999 66 778888876664
No 85
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=28.51 E-value=55 Score=18.04 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~ 40 (94)
++|++++..|...+..|+.
T Consensus 47 ~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555543
No 86
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=28.50 E-value=25 Score=24.96 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=10.6
Q ss_pred ccCCeeEEecCCCc
Q 034469 79 DDARKVLVDIGTEN 92 (94)
Q Consensus 79 ~d~~kVlVdIGtGy 92 (94)
..+...++|||||-
T Consensus 19 v~~g~~VlDIGtGs 32 (230)
T 3lec_A 19 VPKGARLLDVGSDH 32 (230)
T ss_dssp SCTTEEEEEETCST
T ss_pred CCCCCEEEEECCch
Confidence 34567899999984
No 87
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=28.31 E-value=49 Score=23.78 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=22.8
Q ss_pred EEecCCCee-------eeeEecc--CCeeEEecCCCccC
Q 034469 65 LVPLTASLY-------VPGTLDD--ARKVLVDIGTENDG 94 (94)
Q Consensus 65 LVPLt~sly-------V~gkl~d--~~kVlVdIGtGy~~ 94 (94)
.+|+++.-| |.|++.+ ++.+.||||.+|.|
T Consensus 62 V~p~~~~~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~G 100 (251)
T 2je6_I 62 VIPLEGSFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKA 100 (251)
T ss_dssp EEESCCSCCCCCTTCEEEEEEEEECSSEEEEECSSSSCE
T ss_pred EEECCCcccCCCCCCEEEEEEEEEeCceEEEEcCCCeEE
Confidence 568877666 5578764 78999999998764
No 88
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.28 E-value=1.6e+02 Score=20.75 Aligned_cols=25 Identities=4% Similarity=0.070 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 18 KAIKEQTDLEVNLLQDSLNNIRTAT 42 (94)
Q Consensus 18 ~~l~~ql~qei~~l~~s~~~L~~a~ 42 (94)
......+..+++.+...+..++...
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~ 48 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAI 48 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 89
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=27.71 E-value=39 Score=22.77 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 034469 10 EKMSVEQLKAIKEQTDLE 27 (94)
Q Consensus 10 ~~L~~~qL~~l~~ql~qe 27 (94)
+.|++++|..+++|++.|
T Consensus 15 ~~l~~eeL~~lr~qY~~E 32 (144)
T 1y8m_A 15 EPLYPQQLEILRQQVVSE 32 (144)
T ss_dssp CCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 568999999999999998
No 90
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=27.47 E-value=41 Score=19.95 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.8
Q ss_pred CCCCeEEEecCCCeeeeeEeccCC
Q 034469 59 PQGAKMLVPLTASLYVPGTLDDAR 82 (94)
Q Consensus 59 ~~~~eiLVPLt~slyV~gkl~d~~ 82 (94)
..|.++|.--+.++|-+|+|...+
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~ 38 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKIN 38 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEE
T ss_pred cCCCEEEEEEccCcEEEeEEEEEc
Confidence 568899999999999999997543
No 91
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=27.24 E-value=81 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 60 ~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
.++++|||.-..-||+--=.+..++.||.--|+.
T Consensus 139 ~~~e~LIP~v~~~~V~~VDl~~~~I~v~~p~gll 172 (177)
T 3h9n_A 139 GKQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFL 172 (177)
T ss_dssp CCSEEEEECCBTTTEEEEEGGGTEEEECCCSSTT
T ss_pred CCcEEEeeccchheEEEEeCCCCEEEEECCcchh
Confidence 4789999997667787665667889999887763
No 92
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.20 E-value=1.3e+02 Score=19.40 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~ 54 (94)
.+-+++.++.+.+.+..|+.....+...++..+.
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776666666554
No 93
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.14 E-value=1e+02 Score=18.23 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~ 40 (94)
+.|+.+++.|......|+.
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 94
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=26.66 E-value=59 Score=19.46 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCCCeEEEecCCCeeeeeEecc--CCeeEEe
Q 034469 58 RPQGAKMLVPLTASLYVPGTLDD--ARKVLVD 87 (94)
Q Consensus 58 ~~~~~eiLVPLt~slyV~gkl~d--~~kVlVd 87 (94)
-..|.++|+=-+.|+|--|+|+| .+..+|.
T Consensus 16 ~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~ 47 (69)
T 2xk0_A 16 YALQEDVFIKCNDGRFYLGTIIDQTSDQYLIR 47 (69)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEECSSCEEEE
T ss_pred cccCCeEEEEecCCCEEEEEEEecCCceEEEE
Confidence 35688999999999999999976 3344443
No 95
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.58 E-value=1.1e+02 Score=19.62 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATS 43 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~ 43 (94)
..|...++.|+..+..++.+..
T Consensus 19 ~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 19 SALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555443
No 96
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=26.33 E-value=1.4e+02 Score=19.38 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034469 26 LEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 26 qei~~l~~s~~~L~~a~~~~~~ 47 (94)
++.+.|.+.+..|+.....++.
T Consensus 87 ~q~~~L~~~i~~l~~~l~~l~~ 108 (146)
T 3hh0_A 87 FQREVLLAEQERIAKVLSHMDE 108 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333
No 97
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=26.24 E-value=30 Score=22.87 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=10.2
Q ss_pred cCCeeEEecCCCc
Q 034469 80 DARKVLVDIGTEN 92 (94)
Q Consensus 80 d~~kVlVdIGtGy 92 (94)
++...++|||+|-
T Consensus 40 ~~~~~vLDiGcG~ 52 (214)
T 1yzh_A 40 NDNPIHVEVGSGK 52 (214)
T ss_dssp SCCCEEEEESCTT
T ss_pred CCCCeEEEEccCc
Confidence 4577899999883
No 98
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.98 E-value=1.1e+02 Score=18.18 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
|.+|..-.+++.+|.+.|......|+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556555555555554
No 99
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=25.39 E-value=1.2e+02 Score=20.58 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
+.|..+..++++.++.+.+.+...-.. ..+..|.+.+.
T Consensus 121 ~~l~~l~~~~~~~~~~~~~~l~~~~~~-~d~~~A~~~~~ 158 (181)
T 3uo3_A 121 AGVKLLEKQNKERIQDIEAQLGQCYND-KDYAAAVKLTV 158 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 456666666777776666666554432 24555554444
No 100
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=24.98 E-value=1.7e+02 Score=20.06 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50 (94)
Q Consensus 16 qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~ 50 (94)
-|.+..++++++++.|+.....|+.....+..+..
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~ 117 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISLVKKRMKRQME 117 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35556688899999999999998887777665543
No 101
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.12 E-value=1.2e+02 Score=18.62 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034469 38 IRTATSRLESASTALHD 54 (94)
Q Consensus 38 L~~a~~~~~~~~~al~~ 54 (94)
++.+...+++|.+.|++
T Consensus 51 i~~ie~~ldEA~eLl~q 67 (102)
T 2qyw_A 51 VRDFDEKQQEANETLAE 67 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 102
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=23.80 E-value=22 Score=21.21 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034469 14 VEQLKAIKEQTDLEVNLLQD 33 (94)
Q Consensus 14 ~~qL~~l~~ql~qei~~l~~ 33 (94)
.+||..|++.+++|+++=..
T Consensus 39 kEQL~~LKkkl~eq~~~h~~ 58 (66)
T 2v7q_J 39 KEQLAALKKHHENEISHHAK 58 (66)
T ss_dssp HHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777765443
No 103
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=23.53 E-value=1.3e+02 Score=18.69 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034469 21 KEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~ 40 (94)
.+.|+.+++.|+..+..|+.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555554
No 104
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=23.48 E-value=40 Score=22.34 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecC
Q 034469 45 LESASTALHDLSLRPQGAKMLVPLT 69 (94)
Q Consensus 45 ~~~~~~al~~l~~~~~~~eiLVPLt 69 (94)
-..|.++|+.|+....|.-.++||.
T Consensus 52 ~~~A~~~i~~Lk~~~~GRatflpL~ 76 (166)
T 3l51_B 52 IDTAQECVNFLKKHNIGIATFIGLD 76 (166)
T ss_dssp HHHHHHHHHHHHHTTCCCCCEEEGG
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECc
Confidence 3567888888887777889999985
No 105
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.43 E-value=1.4e+02 Score=18.65 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQDSLNNIR 39 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~~s~~~L~ 39 (94)
.+|..+...|++++.-|+.++..|.
T Consensus 16 ~~L~~F~d~Lq~~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 16 GHLERFKELLREEVNSLSNHFHNLE 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6899999999999999999999886
No 106
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=23.33 E-value=1.3e+02 Score=21.12 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=29.7
Q ss_pred ccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecC
Q 034469 55 LSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIG 89 (94)
Q Consensus 55 l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIG 89 (94)
|++...|..|-|=..|+--|.|++.++.+|.|++.
T Consensus 165 L~~G~~Gd~IrVr~~Sgkiv~g~V~~~g~V~V~L~ 199 (219)
T 3tee_A 165 MNNAAVAQNARVRMTSGQIVSGTVDSDGNILINLD 199 (219)
T ss_dssp CSCBCTTSEEEEEETTSCEEEEEECTTSCEEEEC-
T ss_pred ccccCCCCEEEEECCCCCEEEEEEecCCEEEEEcC
Confidence 45566788899999999999999999999999875
No 107
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.22 E-value=2.6e+02 Score=21.50 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=7.2
Q ss_pred eccCCeeEEecCCC
Q 034469 78 LDDARKVLVDIGTE 91 (94)
Q Consensus 78 l~d~~kVlVdIGtG 91 (94)
+.|.+++||...+|
T Consensus 102 ~~d~~~~iv~~~~~ 115 (428)
T 4b4t_K 102 PIDQNTGIVSSTTG 115 (428)
T ss_dssp EEETTEEEEEETTS
T ss_pred EccCCeeEEecCCC
Confidence 34556666554443
No 108
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=22.96 E-value=41 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=20.7
Q ss_pred EEecCCCeee------eeEeccCCeeEEecCCCcc
Q 034469 65 LVPLTASLYV------PGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 65 LVPLt~slyV------~gkl~d~~kVlVdIGtGy~ 93 (94)
+.-++.+-|- --++...++|+|-||+|+.
T Consensus 31 v~rv~eGkYr~G~k~i~vRil~~~~vMVRVGGGW~ 65 (97)
T 1v5r_A 31 VERLSQGRYRVGEKILFIRMLHNKHVMVRVGGGWE 65 (97)
T ss_dssp EEEEETTEEEETTEEEEEEEETTTEEEEEETTEEE
T ss_pred eEEeCCCcEEeCCeEEEEEEecCCEEEEEeCCcHH
Confidence 4556666663 3356667899999999974
No 109
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=22.90 E-value=18 Score=23.07 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh
Q 034469 43 SRLESASTALHD 54 (94)
Q Consensus 43 ~~~~~~~~al~~ 54 (94)
+|+..|+.+|+.
T Consensus 82 SKL~~~kk~ie~ 93 (95)
T 3n7n_E 82 SKLSSKDAFIDD 93 (95)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 110
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.66 E-value=2e+02 Score=20.13 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
...|.+|.+.++.++..|..-..+|..+++..+
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555655555554
No 111
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=22.48 E-value=38 Score=22.63 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=10.2
Q ss_pred cCCeeEEecCCCc
Q 034469 80 DARKVLVDIGTEN 92 (94)
Q Consensus 80 d~~kVlVdIGtGy 92 (94)
++...++|||+|.
T Consensus 37 ~~~~~vLDiGcG~ 49 (213)
T 2fca_A 37 NDNPIHIEVGTGK 49 (213)
T ss_dssp SCCCEEEEECCTT
T ss_pred CCCceEEEEecCC
Confidence 4567899999984
No 112
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=22.39 E-value=76 Score=18.91 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCCCeEEEecCCCeeeeeEeccCCeeEEec
Q 034469 59 PQGAKMLVPLTASLYVPGTLDDARKVLVDI 88 (94)
Q Consensus 59 ~~~~eiLVPLt~slyV~gkl~d~~kVlVdI 88 (94)
++..++-|=|..|.=++|+|.+-|++.|=+
T Consensus 23 ~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 23 LNGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp GTTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 456789899999999999999877765544
No 113
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=22.10 E-value=54 Score=20.74 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=17.9
Q ss_pred CCCeeeeeEecc-CCeeEEecCCCcc
Q 034469 69 TASLYVPGTLDD-ARKVLVDIGTEND 93 (94)
Q Consensus 69 t~slyV~gkl~d-~~kVlVdIGtGy~ 93 (94)
....||++++.. +-++|||-|+...
T Consensus 24 ~~~~~v~v~InG~~~~~LvDTGAs~s 49 (148)
T 2i1a_A 24 VPMLYINIEINNYPVKAFVDTGAQTT 49 (148)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCSSC
T ss_pred cceEEEEEEECCEEEEEEEECCCCcc
Confidence 345777777764 5678999998753
No 114
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.06 E-value=52 Score=17.08 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 034469 24 TDLEVNLLQDSLNNIR 39 (94)
Q Consensus 24 l~qei~~l~~s~~~L~ 39 (94)
.+++|+.|..+-..|.
T Consensus 12 ~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 12 HQQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHH
Confidence 4445555444444433
No 115
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.02 E-value=2.2e+02 Score=20.37 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 22 EQTDLEVNLLQDSLNNIRTATSRLES 47 (94)
Q Consensus 22 ~ql~qei~~l~~s~~~L~~a~~~~~~ 47 (94)
++.+.|++.++.++.+.+.+.++.++
T Consensus 188 ~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 188 SRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554444444433
No 116
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=21.81 E-value=52 Score=18.34 Aligned_cols=25 Identities=8% Similarity=0.385 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSL 35 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~ 35 (94)
+|+++|+..|=..-.+.|..|.+++
T Consensus 18 sLt~eQI~~LPp~qR~qI~~LR~q~ 42 (49)
T 2j8p_A 18 QLTADQIAMLPPEQRQSILILKEQI 42 (49)
T ss_dssp TSCHHHHHTSCHHHHTHHHHHHHHH
T ss_pred hCCHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677777776666666666666655
No 117
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=21.75 E-value=40 Score=22.85 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=10.0
Q ss_pred CCeeEEecCCCc
Q 034469 81 ARKVLVDIGTEN 92 (94)
Q Consensus 81 ~~kVlVdIGtGy 92 (94)
...+++|||+|.
T Consensus 34 ~~~~vLDiGcG~ 45 (218)
T 3dxy_A 34 EAPVTLEIGFGM 45 (218)
T ss_dssp CCCEEEEESCTT
T ss_pred CCCeEEEEeeeC
Confidence 677899999884
No 118
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=21.74 E-value=67 Score=23.52 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQD 33 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~ 33 (94)
.|+.+++..-..+.+.+++..+.
T Consensus 73 ~ld~~~~~~~l~~a~a~l~~a~~ 95 (369)
T 1vf7_A 73 QIDPATYEADYQSAQANLASTQE 95 (369)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHH
T ss_pred EECcHHHHHHHHHHHHHHHHHHH
Confidence 34445554444444444444443
No 119
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=21.70 E-value=55 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=17.7
Q ss_pred eeeeEecc--CCeeEEecCCCccC
Q 034469 73 YVPGTLDD--ARKVLVDIGTENDG 94 (94)
Q Consensus 73 yV~gkl~d--~~kVlVdIGtGy~~ 94 (94)
.|.|++.+ ++.+.||||.+|.|
T Consensus 69 iV~G~V~~v~~~~~~V~I~~~~~g 92 (235)
T 2z0s_A 69 VVIGLIQSVGIMNWFVDINSPYVA 92 (235)
T ss_dssp CEEEEEEEECSSEEEEECSSSSCE
T ss_pred EEEEEEEEEeCCeEEEEeCCCeEE
Confidence 46788874 78999999998864
No 120
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=21.42 E-value=64 Score=17.08 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 034469 9 MEKMSVEQLKAIKEQTDLEV 28 (94)
Q Consensus 9 l~~L~~~qL~~l~~ql~qei 28 (94)
|.+|++-++.+|-+.++++.
T Consensus 10 i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 10 IEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HTTSCHHHHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHHHH
Confidence 56788888888888887764
No 121
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.22 E-value=1.9e+02 Score=23.63 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 26 LEVNLLQDSLNNIRTATSRLESAST 50 (94)
Q Consensus 26 qei~~l~~s~~~L~~a~~~~~~~~~ 50 (94)
+.|..|+..|..+..-+.|+...|.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 122
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=20.86 E-value=1.5e+02 Score=18.97 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034469 21 KEQTDLEVNLLQDSLNNIRT 40 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~ 40 (94)
-++|+.+++.|++.+..|+.
T Consensus 25 l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 25 LANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666655543
No 123
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii}
Probab=20.66 E-value=1.9e+02 Score=22.18 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=19.1
Q ss_pred eEEEecCCCe----eeeeE---eccCCeeEEecCCCcc
Q 034469 63 KMLVPLTASL----YVPGT---LDDARKVLVDIGTEND 93 (94)
Q Consensus 63 eiLVPLt~sl----yV~gk---l~d~~kVlVdIGtGy~ 93 (94)
+..|..|... |+|.. +.+.|-|+||+|+-|.
T Consensus 213 ~~IVasG~naa~~H~~~~~~~~l~~GdlVliD~G~~~~ 250 (451)
T 3rva_A 213 TSIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYH 250 (451)
T ss_dssp CCEEEEGGGGGCTTCCCCCSSCCSSCCEEEEEEEEEET
T ss_pred CcEEEECCcccccCCCCCCCcccCCCCEEEEEeeEEEC
Confidence 4456555432 34432 3567899999998654
No 124
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.48 E-value=1.6e+02 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 21 KEQTDLEVNLLQDSLNNIRTATSR 44 (94)
Q Consensus 21 ~~ql~qei~~l~~s~~~L~~a~~~ 44 (94)
..++..|++.|+..|+.|+..+++
T Consensus 38 i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888876643
No 125
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=20.36 E-value=45 Score=22.91 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=10.1
Q ss_pred ccCCeeEEecCCCc
Q 034469 79 DDARKVLVDIGTEN 92 (94)
Q Consensus 79 ~d~~kVlVdIGtGy 92 (94)
.+....++|||.|.
T Consensus 44 ~~~~~~vLDiGcG~ 57 (235)
T 3ckk_A 44 AQAQVEFADIGCGY 57 (235)
T ss_dssp --CCEEEEEETCTT
T ss_pred cCCCCeEEEEccCC
Confidence 45667899999985
No 126
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=20.24 E-value=54 Score=21.79 Aligned_cols=32 Identities=3% Similarity=0.040 Sum_probs=14.3
Q ss_pred CeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469 62 AKMLVPLTASLYVPGTLDDARKVLVDIGTEND 93 (94)
Q Consensus 62 ~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~ 93 (94)
...++|++.|+++--+.....+=--+=|+||.
T Consensus 198 ~~~~~p~~dG~~~~~~~~~k~~~~~~~~~~~~ 229 (233)
T 2gpy_A 198 DTRIFPVGDGIAISIKRETKGDTDDEKAEGHH 229 (233)
T ss_dssp EEEEECSTTCEEEEEEC---------------
T ss_pred EEEEEEcCCeEEEEEEcCCCCCchhhhhcccc
Confidence 45789999999998777666666667777774
No 127
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=20.20 E-value=1e+02 Score=18.09 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=1.8
Q ss_pred HHHHHHHH
Q 034469 14 VEQLKAIK 21 (94)
Q Consensus 14 ~~qL~~l~ 21 (94)
+++|...-
T Consensus 9 ~~~l~~~A 16 (101)
T 3fav_A 9 AATLAQEA 16 (101)
T ss_dssp ---CHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 128
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.16 E-value=1.5e+02 Score=17.62 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (94)
Q Consensus 11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~ 53 (94)
++...+|.+....|+-.+.+....++.|..+..+-..-++.|.
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888888888888888877766555555444
No 129
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.00 E-value=1e+02 Score=15.79 Aligned_cols=18 Identities=0% Similarity=0.027 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034469 15 EQLKAIKEQTDLEVNLLQ 32 (94)
Q Consensus 15 ~qL~~l~~ql~qei~~l~ 32 (94)
++|..-+..|+.|+.-|.
T Consensus 10 EeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 10 XEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 344444444555544443
Done!