BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034470
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXP|A Chain A, Crystal Structure Of A Putative Aminoglycoside
Phosphotransferase (Reut_a1007) From Ralstonia Eutropha
Jmp134 At 2.32 A Resolution
Length = 359
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 11 PFQPAHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVL 70
P + D +AL + +V F ++ QF GQSNPTF + V G + YV
Sbjct: 14 PVADQQRFDTEALEAWXRQHVEGFA---GPLSVEQFKGGQSNPTFKL-VTPG---QTYVX 66
Query: 71 RKKPA--GKLLESAHAVDREFQV 91
R KP KLL SAHA++RE++V
Sbjct: 67 RAKPGPKSKLLPSAHAIEREYRV 89
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEQSGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 30 NVSDFP-RSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKL 78
N+ D P SP+ T QF G++ PT+ + + A V+ +L P G +
Sbjct: 335 NLRDVPFPSPTTNTPRQFRFGRTGPTWTINGVAFADVQNRLLANVPVGTV 384
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEQSGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEESGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEESGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLQKGTPASKLILGMPTYGRSFTLAS 254
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 15 AHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAA--------VK 66
A LD L+ Y DF S K T G ++P + + SGAA V+
Sbjct: 180 AQNLDFVNLMAY------DFHGSWEKVT------GHNSPLYKRQEESGAAASLNVDAAVQ 227
Query: 67 RYVLRKKPAGKLLESAHAVDREFQVAS 93
+++ + PA KL+ R F +AS
Sbjct: 228 QWLEKGTPASKLILGMPTYGRSFTLAS 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,667,955
Number of Sequences: 62578
Number of extensions: 93815
Number of successful extensions: 161
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 7
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)