Query 034470
Match_columns 94
No_of_seqs 108 out of 818
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02876 acyl-CoA dehydrogenas 99.6 1.1E-14 2.4E-19 121.1 9.7 94 1-94 1-94 (822)
2 COG3173 Predicted aminoglycosi 99.4 5.7E-13 1.2E-17 101.8 7.1 73 15-94 5-77 (321)
3 PLN02756 S-methyl-5-thioribose 98.8 1.2E-08 2.6E-13 80.6 6.6 70 17-93 8-86 (418)
4 TIGR02721 ycfN_thiK thiamine k 97.6 7.5E-05 1.6E-09 53.9 3.7 45 44-93 2-46 (256)
5 cd05156 ChoK_euk Choline Kinas 97.6 9.9E-05 2.2E-09 54.3 4.2 51 41-93 1-55 (302)
6 cd05157 ETNK_euk Ethanolamine 97.4 0.00023 5E-09 50.3 4.2 50 41-93 1-50 (235)
7 cd05153 HomoserineK_II Homoser 97.4 0.00036 7.8E-09 51.0 5.2 60 21-93 2-61 (296)
8 cd05151 ChoK Choline Kinase (C 97.2 0.00066 1.4E-08 45.1 4.6 46 42-93 2-47 (170)
9 cd05154 ACAD10_11_like Acyl-Co 97.1 0.00073 1.6E-08 46.4 4.3 49 42-93 2-50 (223)
10 TIGR02172 Fb_sc_TIGR02172 Fibr 97.1 0.00065 1.4E-08 49.1 3.6 42 43-93 6-47 (226)
11 PF01636 APH: Phosphotransfera 97.0 0.00033 7.2E-09 48.0 1.7 45 42-93 1-45 (239)
12 PLN02421 phosphotransferase, a 96.8 0.0046 1E-07 46.9 6.1 54 38-93 14-68 (330)
13 PTZ00296 choline kinase; Provi 96.7 0.0098 2.1E-07 47.3 7.5 74 18-93 84-164 (442)
14 cd05150 APH Aminoglycoside 3'- 96.4 0.0033 7.2E-08 44.8 3.3 43 43-93 3-46 (244)
15 PLN02236 choline kinase 96.4 0.018 3.9E-07 44.0 7.5 73 19-93 15-91 (344)
16 cd05152 MPH2' Macrolide 2'-Pho 96.3 0.0021 4.6E-08 47.7 1.5 48 41-94 11-61 (276)
17 TIGR00938 thrB_alt homoserine 95.9 0.027 5.8E-07 41.8 5.9 64 18-93 7-70 (307)
18 PRK05231 homoserine kinase; Pr 95.8 0.024 5.1E-07 42.0 5.2 64 16-92 5-68 (319)
19 PTZ00384 choline kinase; Provi 95.8 0.04 8.7E-07 43.1 6.7 74 19-93 30-107 (383)
20 PRK09550 mtnK methylthioribose 95.5 0.064 1.4E-06 42.4 6.8 56 17-75 6-61 (401)
21 cd05155 APH_ChoK_like_1 Unchar 95.3 0.016 3.6E-07 41.2 2.7 37 47-93 7-43 (235)
22 PRK12396 5-methylribose kinase 94.7 0.13 2.9E-06 40.9 6.5 74 17-93 9-87 (409)
23 cd05120 APH_ChoK_like Aminogly 89.8 0.73 1.6E-05 28.7 4.1 44 43-93 3-46 (155)
24 PF03881 Fructosamin_kin: Fruc 74.0 8.9 0.00019 28.9 5.1 48 20-74 2-49 (288)
25 cd00180 PKc Catalytic domain o 73.9 4.6 0.0001 26.0 3.1 46 46-93 1-46 (215)
26 PRK10593 hypothetical protein; 73.5 4.5 9.7E-05 30.2 3.3 46 41-93 17-62 (297)
27 PRK06148 hypothetical protein; 71.8 28 0.00061 30.7 8.2 64 16-92 9-72 (1013)
28 PRK11768 serine/threonine prot 60.9 63 0.0014 24.3 7.4 67 16-93 9-75 (325)
29 PRK06149 hypothetical protein; 59.9 46 0.001 29.2 7.2 63 16-92 15-77 (972)
30 PF10691 DUF2497: Protein of u 42.2 17 0.00036 22.3 1.3 16 19-34 43-58 (73)
31 PF12280 BSMAP: Brain specific 42.1 29 0.00063 25.4 2.8 49 18-80 71-119 (207)
32 TIGR01767 MTRK 5-methylthiorib 38.5 31 0.00066 27.3 2.6 29 45-75 2-30 (370)
33 PRK01723 3-deoxy-D-manno-octul 33.9 62 0.0013 23.3 3.5 42 48-93 42-95 (239)
34 COG3827 Uncharacterized protei 27.5 30 0.00065 25.7 0.9 16 19-34 198-213 (231)
35 COG2334 Putative homoserine ki 27.4 1.6E+02 0.0035 22.7 4.9 49 18-76 11-59 (331)
36 KOG2686 Choline kinase [Cell w 26.6 1.9E+02 0.0042 23.0 5.3 55 21-75 21-82 (366)
37 cd05073 PTKc_Hck Catalytic dom 26.1 1.1E+02 0.0023 21.2 3.5 46 43-93 11-56 (260)
38 cd08219 STKc_Nek3 Catalytic do 24.3 1E+02 0.0022 21.1 3.1 49 43-93 5-53 (255)
39 PLN02581 red chlorophyll catab 24.1 1.6E+02 0.0036 22.4 4.3 40 15-59 80-119 (267)
40 PF12544 LAM_C: Lysine-2,3-ami 23.7 97 0.0021 21.1 2.7 16 47-62 8-23 (127)
41 PF14363 AAA_assoc: Domain ass 23.3 71 0.0015 20.1 2.0 15 41-55 28-42 (98)
42 TIGR03843 conserved hypothetic 23.1 1.5E+02 0.0032 22.5 3.8 39 39-78 4-42 (253)
43 PF11324 DUF3126: Protein of u 21.5 2E+02 0.0043 17.2 3.7 32 20-56 2-34 (63)
44 PF04347 FliO: Flagellar biosy 20.9 1.2E+02 0.0025 18.1 2.5 32 39-74 16-48 (84)
No 1
>PLN02876 acyl-CoA dehydrogenase
Probab=99.57 E-value=1.1e-14 Score=121.09 Aligned_cols=94 Identities=69% Similarity=1.093 Sum_probs=78.3
Q ss_pred CCCccCCCCcCCCCCCcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCC
Q 034470 1 MASRTGDLVSPFQPAHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLE 80 (94)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~ 80 (94)
|...+.+...+++.++.+|.++|.+||.++++++.++...+++++|++|+||+||+|+..++....+||||++|++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~ 80 (822)
T PLN02876 1 MAKRTSDLLVPVQSAHRFDEDALLRYAAANVAGFPVPPSTFKVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQ 80 (822)
T ss_pred CCCCccCcCCCCCccccCCHHHHHHHHHHhCCCcCCCccceeEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCc
Confidence 66666677778888889999999999999987664322347899999999999999998654333589999999998888
Q ss_pred CccchhhhhhhhcC
Q 034470 81 SAHAVDREFQVASL 94 (94)
Q Consensus 81 ~ahdl~RE~rVl~a 94 (94)
++|++.||+++|++
T Consensus 81 ~~~~~~rE~~~l~~ 94 (822)
T PLN02876 81 SAHAVEREYQVLRA 94 (822)
T ss_pred cHHHHHHHHHHHHH
Confidence 89999999999963
No 2
>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]
Probab=99.41 E-value=5.7e-13 Score=101.79 Aligned_cols=73 Identities=33% Similarity=0.541 Sum_probs=65.3
Q ss_pred CCcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhcC
Q 034470 15 AHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVASL 94 (94)
Q Consensus 15 ~~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~a 94 (94)
...+|...|.+||..++++.. +...++++++|+||.||++...+ +.||||+||.+...+++|++.|||++|++
T Consensus 5 ~~~~~~~~l~~~l~~~ip~~~---~~~~v~~~~~G~sn~t~~~~~~~----~~~vlR~P~~~~~~~~~~~~~re~~~i~~ 77 (321)
T COG3173 5 QVALDIAALAAYLRSQIPGYA---GLLIVEEISGGWSNDTFRLGDTG----QKYVLRKPPRGDPVESAHDEKREYRVIAA 77 (321)
T ss_pred cccCCHHHHHHHHHhhCcCcC---CCceeeeccCCcccceEEEecCC----ceEEEecCCccccchhhhHHHhHHHHHHH
Confidence 357899999999999999764 45789999999999999998766 89999988889999999999999999974
No 3
>PLN02756 S-methyl-5-thioribose kinase
Probab=98.80 E-value=1.2e-08 Score=80.57 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHhhh------CCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCc---cchhh
Q 034470 17 QLDLDALLRYASVN------VSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESA---HAVDR 87 (94)
Q Consensus 17 ~~d~~~L~~wL~~~------l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~a---hdl~R 87 (94)
.+|.+.|.+||.++ +++. ...++++++++|+||.+|+|+.++ +.+|||++|+.....++ |++.|
T Consensus 8 ~l~~~~l~~yl~~~~~~~~~l~g~---~~~l~~~eiggGn~N~VyrV~~~~----~svVVKqa~p~~r~vga~wpl~~~R 80 (418)
T PLN02756 8 PLDEKSLVEYIKATPALSSKIGND---LDDLKIKEVGDGNLNFVYIVVSSS----GSFVIKQALPYIRCIGESWPMTKER 80 (418)
T ss_pred cCCHHHHHHHHHHccchhhhcCCC---CCCceEEEcCCCceeeEEEEEcCC----ccEEEEeCCccccCCCccccCCccH
Confidence 68999999999997 4432 245789999999999999999865 67999999999988877 89999
Q ss_pred hhhhhc
Q 034470 88 EFQVAS 93 (94)
Q Consensus 88 E~rVl~ 93 (94)
++..++
T Consensus 81 ~~~Ea~ 86 (418)
T PLN02756 81 AYFEAT 86 (418)
T ss_pred HHHHHH
Confidence 988754
No 4
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=97.59 E-value=7.5e-05 Score=53.91 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=35.5
Q ss_pred eeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 44 SQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 44 ~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
..+++|.||.+|+++.++ .+||+|.++......+ -+..+|+++++
T Consensus 2 ~~~~~G~tn~~y~~~~~~----~~~vlR~~~~~~~~~~-~~r~~E~~~l~ 46 (256)
T TIGR02721 2 QTLSGGLTNRSWRIEHPG----ISFVWRPQSPVCKALG-VDRQREYQILQ 46 (256)
T ss_pred CcCCCcCcCCeEEEEeCC----ccEEEeeCCccccccc-CcHHHHHHHHH
Confidence 457899999999999776 7899999886544432 26789999886
No 5
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=97.57 E-value=9.9e-05 Score=54.29 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=38.7
Q ss_pred eeEeeeCCCcccceEEEEeCCC----cceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 41 FTISQFGHGQSNPTFLMEVGSG----AAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~~~~g----~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+++.++++|.||.+|+|+..++ ...+.+|+|.+-.. .....++.+|+++++
T Consensus 1 ~~i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~--~~~~~~r~~E~~~~~ 55 (302)
T cd05156 1 LEVSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQS--VELLIDRERELVVFA 55 (302)
T ss_pred CeEEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCC--CcceechHHHHHHHH
Confidence 3688999999999999997531 11268999995543 345679999999875
No 6
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=97.41 E-value=0.00023 Score=50.31 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=36.5
Q ss_pred eeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 41 FTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+.++++++|.||.+|+++.+++ ....||||.+..... ...+..+|+++++
T Consensus 1 ~~i~~l~gG~tN~~~~v~~~~~-~~~~~vlR~~~~~~~--~~~d~~~E~~~~~ 50 (235)
T cd05157 1 ITFKRFTGGITNKLVKVSNKED-NQDAVLVRVYGNKTE--LIIDRERELRIHK 50 (235)
T ss_pred CeEEEcCCcccceEEEEEcCCC-CCCeEEEEEccCCcc--ceecHHHHHHHHH
Confidence 3588999999999999997520 016899998765432 2357788998875
No 7
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=97.39 E-value=0.00036 Score=51.00 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 21 DALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 21 ~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+.|+.+|..--.+ ...++..+.+|.+|.+|++..++ ..||||..+. .+...+..|+++++
T Consensus 2 ~~l~~~l~~y~~~-----~~~~i~~i~~G~~n~~y~v~~~~----~~~vLr~~~~----~~~~~~~~e~~~l~ 61 (296)
T cd05153 2 EELASFLADYDLG-----ELLSFEGISAGIENTNYFVTTDS----GRYVLTLFEK----VSAEELPFFLALLD 61 (296)
T ss_pred HHHHHHHHHcCCC-----chhheecccCccccceEEEEeCC----CcEEEEEcCC----CChHhccHHHHHHH
Confidence 4577777764211 23579999999999999999877 6899999875 33567888988875
No 8
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=97.22 E-value=0.00066 Score=45.14 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=37.3
Q ss_pred eEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 42 TISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 42 ~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
.++++++|.+|.+|+++..+ +.+|||.++.... ...+..+|+++++
T Consensus 2 ~~~~l~~G~~~~vy~~~~~~----~~~~lK~~~~~~~--~~~~~~~E~~~l~ 47 (170)
T cd05151 2 HISPLKGGMTNKNYRVEVAN----KKYVVRIPGNGTE--LLINRENEAENSK 47 (170)
T ss_pred ceeecCCcccCceEEEEECC----eEEEEEeCCCCcc--cccCHHHHHHHHH
Confidence 47889999999999999876 7899999876542 3457889998875
No 9
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=97.14 E-value=0.00073 Score=46.39 Aligned_cols=49 Identities=49% Similarity=0.823 Sum_probs=39.8
Q ss_pred eEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 42 TISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 42 ~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
.++++++|.+|..|+++..+| ..+|||.+...........+.+|+.+++
T Consensus 2 ~~~~l~~G~~n~~~~v~~~~g---~~~ilK~~~~~~~~~~~~~~~~E~~~~~ 50 (223)
T cd05154 2 EVRQLSGGQSNLTYLLTAGGG---RRLVLRRPPPGALLPSAHDVAREYRVLR 50 (223)
T ss_pred cceecCCCccceEEEEEecCC---cceEEEeCCCcccCcccccHHHHHHHHH
Confidence 467889999999999998653 6899999887665456678999999875
No 10
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=97.07 E-value=0.00065 Score=49.09 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=34.1
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
.++|+.|.||.+|.. .+ +++|||.++++. +.+++.+|+++|+
T Consensus 6 ~~~i~~G~t~~~y~~--~~----~~~VlR~~~~~~---~~~~i~~E~~~l~ 47 (226)
T TIGR02172 6 WTQTGEGGNGESYTH--KT----GKWMLKLYNPGF---DKETIKREFDASR 47 (226)
T ss_pred heeecCCCCcceeEe--cC----CCEEEEeCCCCC---CHHHHHHHHHHHH
Confidence 578899999999984 23 579999998644 5678999999985
No 11
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=97.03 E-value=0.00033 Score=48.04 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=36.3
Q ss_pred eEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 42 TISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 42 ~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+|+.+++|.+|.+|+++.++ +.||||..+.. .....+.+|+.+++
T Consensus 1 ~i~~l~~G~~n~~~~v~~~~----~~~vlK~~~~~---~~~~~~~~e~~~~~ 45 (239)
T PF01636_consen 1 HIRPLSGGFSNRVYRVTTDD----GRYVLKFYRPP---DAAERLRREAAVLR 45 (239)
T ss_dssp -EEEEEESSSSEEEEEEETT----SEEEEEEESSH---HHHHHHHHHHHHHH
T ss_pred CCccCCCCCeeeEEEEEECC----cEEEEEEeCCC---CCHHHHHHHHHHHH
Confidence 37889999999999999988 69999998765 34457888888764
No 12
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=96.76 E-value=0.0046 Score=46.88 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=38.4
Q ss_pred CCceeEeeeCCCcccceEEEEeCCC-cceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 38 PSKFTISQFGHGQSNPTFLMEVGSG-AAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 38 ~~~~~~~~~~~G~SN~T~~l~~~~g-~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
..++++++++||.+|.+|+|+..+. .....+|+|.+-.+.. ..-|-.+|+.+++
T Consensus 14 ~~~i~i~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~--~~IdR~~E~~il~ 68 (330)
T PLN02421 14 DSDFSVERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTD--YVIDRERELQAIK 68 (330)
T ss_pred cCceEEEEeCCcccceEEEEEecCCCCCCceEEEEEecCCcC--eEechHHHHHHHH
Confidence 3579999999999999999986432 1124899998876543 2235566776654
No 13
>PTZ00296 choline kinase; Provisional
Probab=96.66 E-value=0.0098 Score=47.32 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCHHHHHHHHhhhCCCCCCC-CCceeEeeeCCCcccceEEEEeCCC-c-----ceeeEEEeCCCCCCCCCCccchhhhhh
Q 034470 18 LDLDALLRYASVNVSDFPRS-PSKFTISQFGHGQSNPTFLMEVGSG-A-----AVKRYVLRKKPAGKLLESAHAVDREFQ 90 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~~~~-~~~~~~~~~~~G~SN~T~~l~~~~g-~-----~~~~~VLRr~P~g~~~~~ahdl~RE~r 90 (94)
.|.+.+...+.+.+++.... ...+.+.++++|.||..|+|+..++ . ..+.+|+|.+-.+.... -|-.+|..
T Consensus 84 ~~~~~~~~i~~~~vp~W~~~~~~~I~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~l--IdR~~E~~ 161 (442)
T PTZ00296 84 TDPLYIKKICLEKVPEWRRFTEDDVRVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDEL--YNPISEFE 161 (442)
T ss_pred CChHHHHHHHHHHCCccccCCcccEEEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccce--eCHHHHHH
Confidence 45556666666566554321 3468999999999999999987422 1 12689999997765333 26667777
Q ss_pred hhc
Q 034470 91 VAS 93 (94)
Q Consensus 91 Vl~ 93 (94)
+++
T Consensus 162 v~~ 164 (442)
T PTZ00296 162 VYK 164 (442)
T ss_pred HHH
Confidence 654
No 14
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=96.44 E-value=0.0033 Score=44.77 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=34.9
Q ss_pred EeeeCCCcc-cceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 43 ISQFGHGQS-NPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~S-N~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
..+++.|+| |.+|+++..+ ..+|+|+.|... ..++.+|+++|+
T Consensus 3 ~~~~~~g~~~~~v~~~~~~~----~~~~vk~~~~~~----~~~~~~E~~~l~ 46 (244)
T cd05150 3 WERVTEGQSGATVYRLDGKN----PGLYLKIAPSGP----TYELEREAERLR 46 (244)
T ss_pred ceecCCCCCcCeEEEEcCCC----CcEEEEecCCCc----ccchHHHHHHHH
Confidence 467778888 9999998765 689999998764 558899999985
No 15
>PLN02236 choline kinase
Probab=96.43 E-value=0.018 Score=44.03 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=48.0
Q ss_pred CHHHHHHHHhhhCCCCCC--CCCceeEeeeCCCcccceEEEEeCCC--cceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 19 DLDALLRYASVNVSDFPR--SPSKFTISQFGHGQSNPTFLMEVGSG--AAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 19 d~~~L~~wL~~~l~~~~~--~~~~~~~~~~~~G~SN~T~~l~~~~g--~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+...+...+.+-.+.... ....+++.+++||.||.+|+++..++ .....+|+|.+..+.. .--|-.+|+++++
T Consensus 15 ~~~~~~~~~~~~~~~w~~~~~~~~~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~--~~idR~~E~~~~~ 91 (344)
T PLN02236 15 IPDELKRILHSLASKWGDVVDDEALQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVE--LFFDRDDEIRTFE 91 (344)
T ss_pred ChHHHHHHHHHhcchhcCCCCcCcEEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCC--eeechHHHHHHHH
Confidence 445555555554444321 13568999999999999999986332 2236899999987642 2235567888764
No 16
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=96.26 E-value=0.0021 Score=47.75 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=32.3
Q ss_pred eeEeeeCCCcccceEEEEe---CCCcceeeEEEeCCCCCCCCCCccchhhhhhhhcC
Q 034470 41 FTISQFGHGQSNPTFLMEV---GSGAAVKRYVLRKKPAGKLLESAHAVDREFQVASL 94 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~~---~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~a 94 (94)
+.+.++.+|+||.+|.+.. .+| +.||+|+||.+.. ...+.||+++|++
T Consensus 11 ~~~~~~~~~~~g~~~~v~~i~~~~g---~~~VlR~p~~~~~---~~~l~rE~~vL~~ 61 (276)
T cd05152 11 LKPETLSLNESGLDFQVVFAKDTDG---VPWVLRIPRRPDV---SERAAAEKRVLAL 61 (276)
T ss_pred cCCCcceecCCcceeEEEEEEcCCC---CeEEEEecCCHHH---HHHHHHHHHHHHH
Confidence 4556666666666655443 222 7899999986443 3468999999863
No 17
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=95.88 E-value=0.027 Score=41.76 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 18 LDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+-.+.|..||... +++ .+.+++.+.+|.+|.+|+++.++ ..||||.--. ..+...+..|.++++
T Consensus 7 ~~~~~l~~~l~~y--~~~---~~~~i~~~~~G~~n~~y~v~t~~----~~~vLK~~~~---~~~~~~i~~e~~~l~ 70 (307)
T TIGR00938 7 VSDEEMSSFLDGY--DLG---ELLSLKGIAEGVENSNYLLTTDV----GRYILTLYEK---RVKAEELPFFLALTT 70 (307)
T ss_pred CCHHHHHHHHHhc--CCC---CceeccccCCccccceEEEEeCC----CcEEEEEecC---CCCHHHHHHHHHHHH
Confidence 3448899999965 221 34679999999999999999876 5799996322 122346777777653
No 18
>PRK05231 homoserine kinase; Provisional
Probab=95.78 E-value=0.024 Score=41.98 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=43.6
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhh
Q 034470 16 HQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVA 92 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl 92 (94)
+.++.+.|+.||. +.+ .+ ...++..+.+|.+|.+|++++++ ..||||.-. . .+...+..|++++
T Consensus 5 t~ls~~~l~~~l~-~y~-~~---~~~~~~~l~~G~~n~~y~v~t~~----g~~vLK~~~-~---~~~~~l~~~~~~l 68 (319)
T PRK05231 5 TDVSDDELAAFLA-PYD-LG---ELLSLKGIAEGIENSNFFLTTTQ----GEYVLTLFE-R---LTAEDLPFFLGLM 68 (319)
T ss_pred ccCCHHHHHHHHH-hcC-Cc---hhhccchhccccccceEEEEeCC----CcEEEEEec-c---CChHHhHHHHHHH
Confidence 3567788999994 442 21 23568889999999999999877 579999643 1 1223455565554
No 19
>PTZ00384 choline kinase; Provisional
Probab=95.76 E-value=0.04 Score=43.08 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=45.9
Q ss_pred CHHHHHHHHhhhCCCCCCC-CCceeEeeeCCCcccceEEEEeCCCc-ce--eeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 19 DLDALLRYASVNVSDFPRS-PSKFTISQFGHGQSNPTFLMEVGSGA-AV--KRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 19 d~~~L~~wL~~~l~~~~~~-~~~~~~~~~~~G~SN~T~~l~~~~g~-~~--~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+...+-.++.+.++++.+. ...+++++++||.||..|+++..++. .. .+.||||.. |....-.-|=.+|++|++
T Consensus 30 ~~~~~~~~~~~~~p~w~~~~~~~i~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~-g~~~~l~IdR~~E~~i~~ 107 (383)
T PTZ00384 30 SHSNLKSLCIRHVPFWNNVNPEFIEIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKS-STYNSLVIDNDLQYNIAK 107 (383)
T ss_pred cHHHHHHHHHHHCCccccCCcccEEEEEeCCcccceEEEEEecCCCCCccccceEEEEec-cCCCceEeccHHHHHHHH
Confidence 4456777777778876543 34589999999999999999864421 00 123666653 222222224455888764
No 20
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=95.45 E-value=0.064 Score=42.42 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCC
Q 034470 17 QLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPA 75 (94)
Q Consensus 17 ~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~ 75 (94)
.++.+.+..||...++-+.. ....+++.+++|..|..|+++..+|. +.+|++..|+
T Consensus 6 ~l~~~~v~~yl~~~~~~~~~-~~~~~~~elggGn~N~VyrV~~~~g~--~svIVKqa~p 61 (401)
T PRK09550 6 TLTEEDAVEYAALKLGLFDP-KALLTAREIGDGNLNLVFRVSDTEGG--KSVIVKQALP 61 (401)
T ss_pred eCCHhHHHHHHHHhcCCCCC-cccceeeEcCCCceEEEEEEEeCCCC--eEEEEEecCc
Confidence 46778899999666554433 35678999999999999999976531 3799998764
No 21
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=95.27 E-value=0.016 Score=41.24 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 47 GHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 47 ~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
++|.+|.+|.+. ..+|||.++... +++++.+|+++|+
T Consensus 7 ~gG~~n~vy~~~-------~~~VlR~~~~~~---~~~~~~~E~~~l~ 43 (235)
T cd05155 7 SGGTDNATFRLG-------DDMSVRLPSAAG---YAGQVRKEQRWLP 43 (235)
T ss_pred CCCcccceEEcC-------CceEEEcCCccc---hHHHHHHHHHHHH
Confidence 589999999983 469999887632 4669999999985
No 22
>PRK12396 5-methylribose kinase; Reviewed
Probab=94.65 E-value=0.13 Score=40.92 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCC-----CCccchhhhhhh
Q 034470 17 QLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLL-----ESAHAVDREFQV 91 (94)
Q Consensus 17 ~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~-----~~ahdl~RE~rV 91 (94)
.++.+.+..|+.+.++.+.. .+.++++.+++|.+|.+|++....+. +.+|+....+--.. -+-.....|+.+
T Consensus 9 ~l~~~~v~~yl~~~l~~~~~-~~~~~~~eigdGnlN~VfrV~~~~~~--~svIVKQAlp~vRv~~swpL~~~R~~~E~~a 85 (409)
T PRK12396 9 LMEANDVIVYVKEKLSKFEH-AKGLQCKEIGDGNLNYVFRVWDEQKN--ISVIVKQAGDTARISDEFKLSTNRIRIESDV 85 (409)
T ss_pred eCCHhHHHHHHHHhcCCCCC-cccceeeEcCCCceEEEEEEeeCCCC--ceEEEEeccHhhccCCCCCCChHHHHHHHHH
Confidence 57778899999887665544 35688999999999999999853111 56887544431111 222344556666
Q ss_pred hc
Q 034470 92 AS 93 (94)
Q Consensus 92 l~ 93 (94)
|+
T Consensus 86 L~ 87 (409)
T PRK12396 86 LQ 87 (409)
T ss_pred HH
Confidence 54
No 23
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=89.82 E-value=0.73 Score=28.67 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=33.4
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
+..++.|.+|.+|.+...+ ..++++....... ...+.+|+.+++
T Consensus 3 ~~~i~~g~~~~v~~~~~~~----~~~~iK~~~~~~~---~~~~~~e~~~~~ 46 (155)
T cd05120 3 IKLLKGGLTNRVYLLGTKD----EDYVLKINPSREK---GADREREVAILQ 46 (155)
T ss_pred ceecccccccceEEEEecC----CeEEEEecCCCCc---hhHHHHHHHHHH
Confidence 4567889999999999876 6899987764432 457888888764
No 24
>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []. Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.
Probab=74.04 E-value=8.9 Score=28.91 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCC
Q 034470 20 LDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKP 74 (94)
Q Consensus 20 ~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P 74 (94)
+.+++..|.++++.. ....+++.++||.-|..|.++.++ +.+.+...+
T Consensus 2 w~~i~~~~~~~~~~~---~~i~~~~~v~GG~i~~a~~~~~~~----~~~FvK~~~ 49 (288)
T PF03881_consen 2 WQAIEQQISEQLGAD---FKITSIEPVSGGDINEAYRLDTDG----GSYFVKVNS 49 (288)
T ss_dssp HHHHHHHHHHHHTS--------EEEEE--SSSSEEEEEETTS-----EEEEEEEE
T ss_pred hHHHHHHHHHHhCCC---CceeeeEecCCCChhheEEEECCC----ccEEEEecC
Confidence 467889999987531 123468999999999999999766 788888666
No 25
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=73.90 E-value=4.6 Score=26.00 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=31.6
Q ss_pred eCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 46 FGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 46 ~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
++.|..+.+|.+...+. +..++++..+..........+.+|+++++
T Consensus 1 l~~g~~~~v~~~~~~~~--~~~~~~K~~~~~~~~~~~~~~~~e~~~~~ 46 (215)
T cd00180 1 LGEGGFGTVYLARDKKT--GKKVAIKIIKKEDSSSLLEELLREIEILK 46 (215)
T ss_pred CCcCCceEEEEEEecCC--CcEEEEEEeccccchhHHHHHHHHHHHHH
Confidence 35788899999987521 17899998776543222356888888775
No 26
>PRK10593 hypothetical protein; Provisional
Probab=73.47 E-value=4.5 Score=30.22 Aligned_cols=46 Identities=4% Similarity=-0.120 Sum_probs=32.2
Q ss_pred eeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 41 FTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
.+++.+++|.+|..|.++.++ .++|+.-.+.. .....+.+|++.|+
T Consensus 17 ~~~~~i~~G~~~~vy~~~~~~----~~~~~k~~~~~---~~~~~~~~Ea~~L~ 62 (297)
T PRK10593 17 SRVECISEQPYAALWALYDSQ----GNPMPLMARSF---STPGVAQQEAWKLS 62 (297)
T ss_pred heeeecCCccceeEEEEEcCC----CCEEEEEeccc---ccchHHHHHHHHHH
Confidence 468999999999999998766 45554433221 12347889988875
No 27
>PRK06148 hypothetical protein; Provisional
Probab=71.83 E-value=28 Score=30.69 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=43.3
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhh
Q 034470 16 HQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVA 92 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl 92 (94)
..++.+.++.-+.++.+- . .+++.+. |.-|.+|+|+.++| ..||||...+.. +.-.++-|.++|
T Consensus 9 p~~s~~~~~~~~~~~ygl-~-----~~~~~L~-s~~d~nf~v~~~~g---~~yVLKi~~~~~---~~~~~~~q~~~L 72 (1013)
T PRK06148 9 PEFTTKDAEALLAQHFGI-S-----ATATPLD-GERDLNFRLTTDDG---ADYILKIVNPSE---PRVESDFQTAAL 72 (1013)
T ss_pred CCCCHHHHHHHHHHHcCC-c-----eEEeecC-CcCCceEEEEeCCC---CeEEEEEcCCcc---chhHHHHHHHHH
Confidence 367888898999988753 2 2466764 56799999998653 689999877642 222444444444
No 28
>PRK11768 serine/threonine protein kinase; Provisional
Probab=60.93 E-value=63 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=43.0
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 16 HQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
..++.+.+.+-+... |+. ..-.+.. -++.-|.+|+|+..++ ..+|+|...++. .+...+..|.+++.
T Consensus 9 ~~l~p~~~~~a~~~~--g~~---~~~~~~~-l~s~eN~vy~v~~~~~---~~~vlKv~r~~~--~~~~~i~~E~~~l~ 75 (325)
T PRK11768 9 QTLTPDLILDALESL--GLR---VDGRLLA-LNSYENRVYQFGDEDG---RRVVAKFYRPER--WSDAQILEEHAFAL 75 (325)
T ss_pred CCCChHHHHHHHHHc--CCC---CccceEe-eccccceEEEEecCCC---CEEEEEEcCccc--CCHHHHHHHHHHHH
Confidence 456777777777664 221 1123444 4578999999998543 679999765443 34556777777653
No 29
>PRK06149 hypothetical protein; Provisional
Probab=59.86 E-value=46 Score=29.17 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=44.2
Q ss_pred CcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhh
Q 034470 16 HQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVA 92 (94)
Q Consensus 16 ~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl 92 (94)
..++.+.+++.|.++.+- . .++..+ +|..|.+|+|+..+ .+||||.-.++. +...+.-|..+|
T Consensus 15 p~ls~~~~~~ll~~~ygl-~-----~~~~~L-~s~~d~nf~v~t~~----~~yVLKi~~~~~---~~~~l~~e~~~l 77 (972)
T PRK06149 15 PDVSEAQAERILAEHYGL-S-----GTLTEL-GSQQDRNFRVDSDG----GRFVLKICHAAY---AAVELEAQHAAL 77 (972)
T ss_pred CCCCHHHHHHHHHHhcCC-c-----eEEEec-CCcCcceEEEEecC----CcEEEEeCCccC---ChHHHHHHHHHH
Confidence 467888999999887642 1 246665 57789999999876 689999876533 233566665554
No 30
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=42.24 E-value=17 Score=22.34 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=12.7
Q ss_pred CHHHHHHHHhhhCCCC
Q 034470 19 DLDALLRYASVNVSDF 34 (94)
Q Consensus 19 d~~~L~~wL~~~l~~~ 34 (94)
-.+-|..||++|||..
T Consensus 43 LRPmLkeWLD~nLP~l 58 (73)
T PF10691_consen 43 LRPMLKEWLDENLPGL 58 (73)
T ss_pred HHHHHHHHHHhccHHH
Confidence 4467999999999853
No 31
>PF12280 BSMAP: Brain specific membrane anchored protein; InterPro: IPR022065 This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.
Probab=42.10 E-value=29 Score=25.36 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=32.0
Q ss_pred CCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCC
Q 034470 18 LDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLE 80 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~ 80 (94)
...+.+..|+.+-+..+ ..|- .|+.||++..++| +-+|++..|...-.+
T Consensus 71 s~l~lv~~~~~dv~ssA---------qsfI--sStWTfYLQaDdG---KvVVfQsqp~i~~~~ 119 (207)
T PF12280_consen 71 SPLDLVRSFCSDVMSSA---------QSFI--SSTWTFYLQADDG---KVVVFQSQPEIEYFP 119 (207)
T ss_pred CHHHHHHHHHHHHHHhh---------hhhc--cceeEEEEEcCCC---CEEEEeccccceecc
Confidence 34455667776654332 2222 6999999999876 778888888654333
No 32
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=38.45 E-value=31 Score=27.34 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=21.0
Q ss_pred eeCCCcccceEEEEeCCCcceeeEEEeCCCC
Q 034470 45 QFGHGQSNPTFLMEVGSGAAVKRYVLRKKPA 75 (94)
Q Consensus 45 ~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~ 75 (94)
.+++|.+|..|++...+| ++.+|+...++
T Consensus 2 EigdGnlN~VfrV~~~~g--~~svIVKQAlp 30 (370)
T TIGR01767 2 EVGDGNLNLVFHVYDQEG--DRAAIVKQALP 30 (370)
T ss_pred cCCCCceEEEEEEEcCCC--CeeEEEEEcCH
Confidence 368999999999986432 14788865554
No 33
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=33.94 E-value=62 Score=23.27 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=28.0
Q ss_pred CCcccceEEEEeCCCcceeeEEEeCCCCCCC----C--------CCccchhhhhhhhc
Q 034470 48 HGQSNPTFLMEVGSGAAVKRYVLRKKPAGKL----L--------ESAHAVDREFQVAS 93 (94)
Q Consensus 48 ~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~----~--------~~ahdl~RE~rVl~ 93 (94)
.|..|.+|++..++ ..+|||+-=.+.. . .....+.||+++|+
T Consensus 42 ~~g~gtv~~v~~~~----~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~ 95 (239)
T PRK01723 42 AKGRGTTWFVQTPG----VNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLA 95 (239)
T ss_pred CCCCccEEEEEeCC----ceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHH
Confidence 57889999999887 7899986533221 1 11124677888764
No 34
>COG3827 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.49 E-value=30 Score=25.73 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=12.4
Q ss_pred CHHHHHHHHhhhCCCC
Q 034470 19 DLDALLRYASVNVSDF 34 (94)
Q Consensus 19 d~~~L~~wL~~~l~~~ 34 (94)
-..-|+.||+++||..
T Consensus 198 LRPmLqdWLDkNLPtL 213 (231)
T COG3827 198 LRPMLQDWLDKNLPTL 213 (231)
T ss_pred HHHHHHHHHHccchHH
Confidence 3456999999999743
No 35
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=27.44 E-value=1.6e+02 Score=22.68 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCC
Q 034470 18 LDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAG 76 (94)
Q Consensus 18 ~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g 76 (94)
+-.+.+..+|...--+.. .....+.+ ..|.+|+|.+.+ +++|||.-.++
T Consensus 11 ~~~~~~~~~l~~~~~g~~-----~~~~~l~s-~eN~~f~~~~~~----g~~iLki~~~~ 59 (331)
T COG2334 11 LTSDEAAAALEAYHYGLD-----GSLRGLNS-EENSNFRVQTED----GRYILKIYRPG 59 (331)
T ss_pred cChHHHHHHHHhcCcCcc-----cccccccc-ccCceEEEEecC----CCeEEEEecCC
Confidence 333556666665432221 23555554 899999999988 57799988776
No 36
>KOG2686 consensus Choline kinase [Cell wall/membrane/envelope biogenesis]
Probab=26.61 E-value=1.9e+02 Score=23.00 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=33.7
Q ss_pred HHHHHHHhhhCCCC-CCC-CCceeEeeeCCCcccceEEEEeCCCc-----ceeeEEEeCCCC
Q 034470 21 DALLRYASVNVSDF-PRS-PSKFTISQFGHGQSNPTFLMEVGSGA-----AVKRYVLRKKPA 75 (94)
Q Consensus 21 ~~L~~wL~~~l~~~-~~~-~~~~~~~~~~~G~SN~T~~l~~~~g~-----~~~~~VLRr~P~ 75 (94)
.+--.|+++.+++. ... ....++..+.+|+||.+|.++.+... .-+.+.||.--.
T Consensus 21 ~~~~~~~~~~l~~~w~~v~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~LlRiyg~ 82 (366)
T KOG2686|consen 21 PRAKELCAQYLGGAWRDVINEEQRLEVIPGGGSNLLFVVTSSASTTPIKDEPRKVLLRIYGQ 82 (366)
T ss_pred HHHHHHHHHHhhhHHhhhhhhhheeeeccCCCcceEEEEecCcccCCcccccceeEEEEecC
Confidence 44445555555543 111 23357899999999999999874421 124678885443
No 37
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=26.08 E-value=1.1e+02 Score=21.16 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=30.9
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
.+.++.|..+.+|+.....+ ..++++....+. ...+.+.+|.++|+
T Consensus 11 ~~~lg~g~~~~vy~~~~~~~---~~~~iK~~~~~~--~~~~~~~~e~~~l~ 56 (260)
T cd05073 11 EKKLGAGQFGEVWMATYNKH---TKVAVKTMKPGS--MSVEAFLAEANVMK 56 (260)
T ss_pred EeEecCccceEEEEEEecCC---ccEEEEecCCCh--hHHHHHHHHHHHHH
Confidence 56678888889998875432 457887554332 23457788988875
No 38
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=24.33 E-value=1e+02 Score=21.08 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=29.2
Q ss_pred EeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCCCCCccchhhhhhhhc
Q 034470 43 ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKLLESAHAVDREFQVAS 93 (94)
Q Consensus 43 ~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~~~~ahdl~RE~rVl~ 93 (94)
...++.|.++.+|.+..... +..++++.-.............+|..+++
T Consensus 5 ~~~lg~g~~g~v~~~~~~~~--~~~~~iK~~~~~~~~~~~~~~~~e~~~l~ 53 (255)
T cd08219 5 LRVVGEGSFGRALLVQHVNS--DQKYAMKEIRLPKSSSAVEDSRKEAVLLA 53 (255)
T ss_pred EEEeeccCCeEEEEEEEcCC--CceEEEEEEEcCcchHHHHHHHHHHHHHH
Confidence 45667788889999876321 16777775432222223346667776654
No 39
>PLN02581 red chlorophyll catabolite reductase
Probab=24.09 E-value=1.6e+02 Score=22.42 Aligned_cols=40 Identities=8% Similarity=0.298 Sum_probs=20.5
Q ss_pred CCcCCHHHHHHHHhhhCCCCCCCCCceeEeeeCCCcccceEEEEe
Q 034470 15 AHQLDLDALLRYASVNVSDFPRSPSKFTISQFGHGQSNPTFLMEV 59 (94)
Q Consensus 15 ~~~~d~~~L~~wL~~~l~~~~~~~~~~~~~~~~~G~SN~T~~l~~ 59 (94)
+..+|+..|..||..+.. .+.+-++-+-++-+|..++++.
T Consensus 80 ggalnItsL~~~L~~std-----aPhf~~Eliq~sptslv~~LDl 119 (267)
T PLN02581 80 GGALNITSLSAFLNPSTD-----APHFLVELIQSSPTSLVLILDL 119 (267)
T ss_pred CccccHHHHHhHhccCCC-----CCceeeeeeccCCceEEEEecc
Confidence 345566666666665432 1234444444445555555554
No 40
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=23.71 E-value=97 Score=21.09 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=8.1
Q ss_pred CCCcccceEEEEeCCC
Q 034470 47 GHGQSNPTFLMEVGSG 62 (94)
Q Consensus 47 ~~G~SN~T~~l~~~~g 62 (94)
..|..-+||.|+..+|
T Consensus 8 tSGlAvPtyVvD~PGG 23 (127)
T PF12544_consen 8 TSGLAVPTYVVDAPGG 23 (127)
T ss_dssp C-GGG--EEEEEETTT
T ss_pred ccccccceEEEECCCC
Confidence 4566777777776443
No 41
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=23.28 E-value=71 Score=20.05 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=8.9
Q ss_pred eeEeeeCCCcccceE
Q 034470 41 FTISQFGHGQSNPTF 55 (94)
Q Consensus 41 ~~~~~~~~G~SN~T~ 55 (94)
+.|.++.|++.|.+|
T Consensus 28 i~I~E~~g~~~N~ly 42 (98)
T PF14363_consen 28 IVIPEFDGLSRNELY 42 (98)
T ss_pred EEEEeCCCccccHHH
Confidence 346666666666655
No 42
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=23.06 E-value=1.5e+02 Score=22.51 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=25.0
Q ss_pred CceeEeeeCCCcccceEEEEeCCCcceeeEEEeCCCCCCC
Q 034470 39 SKFTISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKPAGKL 78 (94)
Q Consensus 39 ~~~~~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P~g~~ 78 (94)
+++++...--..||-||+++...+.. ...++=||=.|..
T Consensus 4 Gel~v~gri~~aSN~t~~~~~~~~~~-~~~~VYKPv~gEr 42 (253)
T TIGR03843 4 GELTVLGRLVDASNATLLCEVTLGGV-SARAVYKPVRGER 42 (253)
T ss_pred ceEEEEEEEccccceeEEEEEecCCe-eEEEEECCcCCcc
Confidence 46777776778999999999743211 2344555555553
No 43
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=21.48 E-value=2e+02 Score=17.22 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhCCCCCCCCCceeEeee-CCCcccceEE
Q 034470 20 LDALLRYASVNVSDFPRSPSKFTISQF-GHGQSNPTFL 56 (94)
Q Consensus 20 ~~~L~~wL~~~l~~~~~~~~~~~~~~~-~~G~SN~T~~ 56 (94)
+.+|++||.+.+.. ..+++.+- ..+.|-+.|.
T Consensus 2 i~klq~yLr~~f~n-----~~i~v~~rpk~~dsaEV~~ 34 (63)
T PF11324_consen 2 IKKLQAYLRRTFGN-----PGITVKARPKKDDSAEVYI 34 (63)
T ss_pred hHHHHHHHHHHhCC-----CceEEEcCCCCCCceEEEe
Confidence 47899999998753 23555443 3466666654
No 44
>PF04347 FliO: Flagellar biosynthesis protein, FliO; InterPro: IPR022781 FliO is an essential component of the flagellum-specific protein export apparatus []. It is an integral membrane protein. Its precise molecular function is unknown. FliO is a short protein found in flagellar biosynthesis operons, and which contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.; GO: 0043064 flagellum organization, 0016021 integral to membrane, 0019861 flagellum
Probab=20.91 E-value=1.2e+02 Score=18.08 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=20.8
Q ss_pred Ccee-EeeeCCCcccceEEEEeCCCcceeeEEEeCCC
Q 034470 39 SKFT-ISQFGHGQSNPTFLMEVGSGAAVKRYVLRKKP 74 (94)
Q Consensus 39 ~~~~-~~~~~~G~SN~T~~l~~~~g~~~~~~VLRr~P 74 (94)
..+. +.+..=|..+-.++|..++ +.|+|=.-+
T Consensus 16 ~~i~vv~~~~Lg~~~~l~lV~v~~----~~~Llgvt~ 48 (84)
T PF04347_consen 16 RRIKVVERLPLGPKKSLVLVEVGG----RYLLLGVTD 48 (84)
T ss_pred CcEEEEEEEEECCCCEEEEEEECC----EEEEEEECC
Confidence 3454 5666667888888888877 666654333
Done!