Query 034472
Match_columns 93
No_of_seqs 95 out of 97
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 04:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8z_A Protein (histonelike pr 82.5 2.3 7.8E-05 26.5 4.5 30 34-63 1-30 (90)
2 2es9_A Putative cytoplasmic pr 81.4 1.3 4.3E-05 30.9 3.2 37 38-74 55-100 (115)
3 1mul_A NS2, HU-2, DNA binding 80.4 3.1 0.00011 25.9 4.6 30 34-63 1-30 (90)
4 2di0_A Activating signal coint 80.2 3.1 0.00011 26.6 4.6 37 17-54 15-60 (71)
5 2kw0_A CCMH protein; oxidoredu 77.4 4.5 0.00015 26.8 4.8 42 7-48 23-71 (90)
6 2hl7_A Cytochrome C-type bioge 77.1 2.9 9.9E-05 27.3 3.7 42 7-48 26-74 (84)
7 1owf_A IHF-alpha, integration 77.1 4 0.00014 25.9 4.4 30 34-63 3-32 (99)
8 1p71_A DNA-binding protein HU; 77.0 3.7 0.00013 25.8 4.2 29 34-62 1-29 (94)
9 3c4i_A DNA-binding protein HU 76.3 3.9 0.00013 26.0 4.2 30 34-63 1-30 (99)
10 2o97_B NS1, HU-1, DNA-binding 76.1 3.8 0.00013 25.5 4.0 29 34-62 1-29 (90)
11 1exe_A Transcription factor 1; 71.2 4.2 0.00014 26.0 3.4 30 34-63 1-30 (99)
12 3rhi_A DNA-binding protein HU; 71.0 4.1 0.00014 25.7 3.3 31 33-63 3-33 (93)
13 1owf_B IHF-beta, integration H 70.0 7.2 0.00025 24.3 4.3 30 34-63 1-31 (94)
14 2e9x_A DNA replication complex 54.7 4.8 0.00016 27.6 1.4 50 25-76 71-121 (149)
15 2np2_A HBB; protein-DNA comple 54.6 12 0.0004 24.2 3.2 30 34-63 9-43 (108)
16 3doe_B ADP-ribosylation factor 49.5 9.4 0.00032 27.7 2.3 43 17-62 70-115 (165)
17 2iie_A Integration HOST factor 48.4 25 0.00085 25.3 4.4 31 33-63 46-76 (204)
18 2ozb_B U4/U6 small nuclear rib 41.9 19 0.00064 27.4 3.0 46 15-60 107-153 (260)
19 2elj_A Transcriptional adapter 37.6 77 0.0026 20.1 5.9 49 12-64 35-85 (88)
20 2f4m_B UV excision repair prot 36.1 41 0.0014 20.5 3.4 24 50-73 23-46 (61)
21 1p6r_A Penicillinase repressor 35.1 50 0.0017 19.1 3.6 34 32-65 22-55 (82)
22 1xn7_A Hypothetical protein YH 34.4 52 0.0018 20.3 3.7 26 40-65 19-44 (78)
23 4hw4_A Induced myeloid leukemi 34.2 94 0.0032 21.5 5.4 51 19-80 5-69 (157)
24 1tbx_A ORF F-93, hypothetical 33.9 56 0.0019 19.3 3.8 33 32-64 21-53 (99)
25 2cuj_A Transcriptional adaptor 32.5 1.1E+02 0.0038 20.3 5.5 49 12-63 53-101 (108)
26 2v9v_A Selenocysteine-specific 32.4 43 0.0015 21.1 3.2 35 52-86 58-92 (135)
27 3icx_A PRE mRNA splicing prote 31.6 34 0.0012 26.1 3.0 43 16-58 94-137 (255)
28 1pve_A HHR23B, UV excision rep 30.0 45 0.0015 21.0 2.9 27 47-73 22-48 (72)
29 2q73_A MAZG, hypothetical prot 29.7 1E+02 0.0036 19.2 5.2 41 34-75 1-41 (100)
30 2aqe_A Transcriptional adaptor 29.7 1.1E+02 0.0037 19.4 4.8 49 12-64 35-84 (90)
31 2w3l_A BCL2-XL, apoptosis regu 29.7 1.2E+02 0.0043 20.1 6.2 50 20-80 5-61 (144)
32 2q5z_A MAZG, hypothetical prot 28.8 1.2E+02 0.004 19.5 4.9 41 34-75 21-61 (114)
33 2q9q_C DNA replication complex 28.0 19 0.00065 25.6 1.0 49 25-75 71-120 (196)
34 2p6v_A Transcription initiatio 27.8 1.2E+02 0.0041 20.9 5.0 39 13-51 37-75 (114)
35 3rmi_A Chorismate mutase prote 27.6 87 0.003 20.5 4.2 32 38-69 61-95 (114)
36 3ed3_A Protein disulfide-isome 27.3 37 0.0013 24.7 2.5 35 33-73 252-286 (298)
37 2nnw_A NOP5/NOP56 related prot 27.2 44 0.0015 26.8 3.0 43 16-58 228-271 (376)
38 1k78_A Paired box protein PAX5 27.0 82 0.0028 20.0 3.9 38 24-62 97-140 (149)
39 4e2i_2 DNA polymerase alpha su 26.8 61 0.0021 20.8 3.2 24 20-43 22-45 (78)
40 3c18_A Nucleotidyltransferase- 26.7 35 0.0012 26.7 2.3 29 47-77 168-196 (290)
41 3pvl_A Myosin VIIA isoform 1; 26.3 1.4E+02 0.0047 25.0 6.0 49 14-62 152-202 (655)
42 1b6c_B TGF-B superfamily recep 26.2 70 0.0024 22.1 3.6 29 17-45 301-333 (342)
43 1yx3_A Hypothetical protein DS 25.9 46 0.0016 23.3 2.6 34 37-73 48-81 (132)
44 1xd7_A YWNA; structural genomi 25.8 69 0.0024 20.9 3.4 27 39-65 25-51 (145)
45 2k02_A Ferrous iron transport 25.7 68 0.0023 20.4 3.3 26 40-65 19-44 (87)
46 1ji8_A Dissimilatory siroheme- 25.7 93 0.0032 21.1 4.1 40 37-82 32-72 (111)
47 1n62_A Carbon monoxide dehydro 25.5 50 0.0017 23.2 2.8 38 4-44 96-133 (166)
48 2q0t_A Putative gamma-carboxym 25.1 1.3E+02 0.0044 21.4 5.0 37 34-74 9-45 (263)
49 2keb_A DNA polymerase subunit 24.7 87 0.003 21.2 3.8 42 20-63 45-90 (101)
50 1ffv_A CUTS, iron-sulfur prote 24.4 54 0.0018 23.0 2.8 38 4-44 95-132 (163)
51 3e97_A Transcriptional regulat 24.1 1.5E+02 0.0053 19.3 5.0 32 30-65 172-203 (231)
52 2h7b_A Core-binding factor, ML 24.0 1.3E+02 0.0046 20.4 4.6 37 15-51 24-60 (105)
53 1tpx_A Prion protein, major pr 24.0 37 0.0013 23.7 1.8 19 17-35 91-110 (121)
54 2vkl_A RV0948C/MT0975; helical 23.6 23 0.0008 22.4 0.7 59 19-77 21-85 (90)
55 3l7w_A Putative uncharacterize 23.4 66 0.0022 20.0 2.8 31 34-64 23-53 (108)
56 1sd4_A Penicillinase repressor 22.9 81 0.0028 19.2 3.1 32 33-64 24-55 (126)
57 3t8r_A Staphylococcus aureus C 22.8 91 0.0031 20.5 3.6 26 40-65 31-56 (143)
58 3i4h_X Endoribonuclease; hydro 22.7 89 0.003 22.9 3.8 30 52-81 34-63 (273)
59 3pkr_A FLIG, flagellar motor s 22.7 2.5E+02 0.0086 21.2 7.3 56 16-74 117-179 (279)
60 2ahq_A Sigma-54, RNA polymeras 22.7 82 0.0028 19.8 3.1 31 19-50 18-53 (76)
61 2y75_A HTH-type transcriptiona 22.7 95 0.0032 19.5 3.5 26 40-65 29-54 (129)
62 3uim_A Brassinosteroid insensi 22.4 70 0.0024 22.1 3.0 40 15-55 274-317 (326)
63 1g2h_A Transcriptional regulat 22.3 1.2E+02 0.004 17.2 4.2 35 23-64 23-57 (61)
64 4dyq_A Gene 1 protein; GP1, oc 22.3 1.4E+02 0.0047 19.6 4.4 55 15-76 10-64 (140)
65 3soc_A Activin receptor type-2 21.3 1.2E+02 0.004 21.2 4.1 28 18-45 284-315 (322)
66 2hv8_D RAB11 family-interactin 21.3 56 0.0019 20.3 2.1 18 33-50 22-39 (64)
67 3ret_A Salicylate biosynthesis 20.9 1.4E+02 0.0049 18.7 4.1 31 38-68 56-89 (101)
68 1d0q_A DNA primase; zinc-bindi 20.8 1.2E+02 0.0041 19.1 3.7 38 9-52 60-98 (103)
69 3q4u_A Activin receptor type-1 20.6 1.1E+02 0.0037 20.6 3.6 28 18-45 268-299 (301)
70 3pla_A NOP5, PRE mRNA splicing 20.5 71 0.0024 25.9 3.0 46 16-61 227-273 (388)
71 2k4b_A Transcriptional regulat 20.0 45 0.0015 21.2 1.5 33 32-64 48-80 (99)
72 2ky5_A Platelet endothelial ce 20.0 58 0.002 20.0 1.9 29 45-73 17-45 (55)
No 1
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=82.46 E-value=2.3 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
||++|+++.++++.++...-...|++.+-+
T Consensus 1 mtk~eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTILE 30 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 899999999999999999888777766554
No 2
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=81.36 E-value=1.3 Score=30.89 Aligned_cols=37 Identities=30% Similarity=0.579 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCChhhHHHH--HHHHH-------HhCHHHHHHHhh
Q 034472 38 QCIKALAEHAGIRPLVTLTV--WRELQ-------KENKDFFRAYFH 74 (93)
Q Consensus 38 Evv~~L~~~a~I~P~fT~~V--W~~LE-------keNpeFFkaY~~ 74 (93)
+-|.+=-+|-|-+|+||..| |.+=- =.|||||..|..
T Consensus 55 ~dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstYM~ 100 (115)
T 2es9_A 55 EVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQ 100 (115)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHH
T ss_pred HHHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHH
Confidence 34455568899999999987 54322 269999999965
No 3
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=80.37 E-value=3.1 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
||++|+++.++++.++...-...|.+.|-+
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALESTLA 30 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999998877777765543
No 4
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=80.19 E-value=3.1 Score=26.59 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=30.2
Q ss_pred hhHHHHHHH--------HHHHHHhc-CCHHHHHHHHHHhcCCChhhH
Q 034472 17 SYIRMVQHL--------IERCLLLH-MSRDQCIKALAEHAGIRPLVT 54 (93)
Q Consensus 17 s~I~~VQ~L--------IErCLqly-Msk~Evv~~L~~~a~I~P~fT 54 (93)
+.|..|+.| |++||..| -|-|.+|.+|.+. +..|.+.
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L~ 60 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS 60 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence 367778776 89999999 8999999999885 6777653
No 5
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=77.38 E-value=4.5 Score=26.81 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=34.3
Q ss_pred Ccccccccchh-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 034472 7 FFPCLHCHPHS-------YIRMVQHLIERCLLLHMSRDQCIKALAEHAG 48 (93)
Q Consensus 7 ~~~c~~~~p~s-------~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~ 48 (93)
.|-|..|+..+ ...-...+|-+=|....|++||++.|-.+.|
T Consensus 23 ~LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 23 ELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp SSBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred cCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 47899999876 4455667778888999999999999988765
No 6
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=77.08 E-value=2.9 Score=27.26 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=34.3
Q ss_pred Ccccccccchh-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 034472 7 FFPCLHCHPHS-------YIRMVQHLIERCLLLHMSRDQCIKALAEHAG 48 (93)
Q Consensus 7 ~~~c~~~~p~s-------~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~ 48 (93)
.|-|..|+..+ ...-...+|-+=|.-..|++||++.|-.+.|
T Consensus 26 ~LRCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 26 ELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp HEECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred cCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 47799999876 4455667788888999999999999988776
No 7
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=77.06 E-value=4 Score=25.92 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
||++|+++.++++.++.+.-...|++.|-+
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~~ 32 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFE 32 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999999888887766554
No 8
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=77.01 E-value=3.7 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQ 62 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LE 62 (93)
||+.|+++.++++.++...-...|.+.+-
T Consensus 1 M~k~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAAL 29 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998877776665544
No 9
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=76.26 E-value=3.9 Score=26.04 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
||+.|+++.++++.++...-...|.+.+-+
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~~ 30 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENVVD 30 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999988877777765543
No 10
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=76.12 E-value=3.8 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQ 62 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LE 62 (93)
||+.|+++.++++.++...-...|.+.+.
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRALDAII 29 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998877766665544
No 11
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=71.17 E-value=4.2 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
||+.|+++.+++..++...-...|.+.+-+
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~~ 30 (99)
T 1exe_A 1 MNKTELIKAIAQDTGLTQVSVSKMLASFEK 30 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999998777776665543
No 12
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=70.96 E-value=4.1 Score=25.66 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 33 HMSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 33 yMsk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
-||+.|.++.++++.++...-...|.+.+.+
T Consensus 3 ~mtk~eLi~~ia~~~~lsk~~~~~~v~~~~~ 33 (93)
T 3rhi_A 3 AMNKTELIKNVAQNAEISQKEATVVVQTVVE 33 (93)
T ss_dssp ----CHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3899999999999999988777777655543
No 13
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=70.01 E-value=7.2 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHh-cCCChhhHHHHHHHHHH
Q 034472 34 MSRDQCIKALAEH-AGIRPLVTLTVWRELQK 63 (93)
Q Consensus 34 Msk~Evv~~L~~~-a~I~P~fT~~VW~~LEk 63 (93)
||+.|+++.++++ .++...-...|.+.+-+
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~~~~ 31 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLE 31 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8999999999999 59988777766655443
No 14
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=54.68 E-value=4.8 Score=27.62 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=36.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhhcc
Q 034472 25 LIERCLLLH-MSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFHSI 76 (93)
Q Consensus 25 LIErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~rl 76 (93)
-+.|||.-| +++-+-++.+.-+.| ..+...++..|-.+-.+||+.|..-+
T Consensus 71 RnKrcLlAYl~~Rl~kI~~~~w~~g--~~L~~~~~~~LS~~E~~f~~~Y~~lL 121 (149)
T 2e9x_A 71 RNRRCTVAYLYDRLLRIRALRWEYG--SVLPNALRFHMAAEEMEWFNNYKRSL 121 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--SSCCHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--ccCChHHHhcCCHHHHHHHHHHHHHH
Confidence 356899998 466777777766654 23456678889999999999997643
No 15
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=54.64 E-value=12 Score=24.17 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=24.3
Q ss_pred CCHHHHHHHHH-----HhcCCChhhHHHHHHHHHH
Q 034472 34 MSRDQCIKALA-----EHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 34 Msk~Evv~~L~-----~~a~I~P~fT~~VW~~LEk 63 (93)
||+.|+++.++ ++.++...-...|.+.+-+
T Consensus 9 mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~ 43 (108)
T 2np2_A 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFE 43 (108)
T ss_dssp EEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHH
Confidence 89999999999 8888988777777665543
No 16
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=49.49 E-value=9.4 Score=27.72 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHh---cCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 034472 17 SYIRMVQHLIERCLLL---HMSRDQCIKALAEHAGIRPLVTLTVWRELQ 62 (93)
Q Consensus 17 s~I~~VQ~LIErCLql---yMsk~Evv~~L~~~a~I~P~fT~~VW~~LE 62 (93)
+|+.+|..+||.-|.- ..|.++.+.+|+++ ...++..||+.|-
T Consensus 70 eY~~LVE~~Le~~L~e~i~Gfsme~F~~~l~~~---~~e~~~dIfe~Ll 115 (165)
T 3doe_B 70 EYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHH---KDEVAGDIFDMLL 115 (165)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHTTT---CC--CCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc---chhhHHHHHHHHH
Confidence 4889999999988887 78999999999765 2345555555443
No 17
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=48.45 E-value=25 Score=25.34 Aligned_cols=31 Identities=6% Similarity=0.071 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 33 HMSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 33 yMsk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
-||++|+++.++++.++...-...|.+.|-+
T Consensus 46 ~Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~ 76 (204)
T 2iie_A 46 GLTKAEMSEYLFDKLGLSKRDAKELVELFFE 76 (204)
T ss_dssp SBCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4999999999999999999888877766554
No 18
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=41.85 E-value=19 Score=27.40 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCChhhHHHHHHH
Q 034472 15 PHSYIRMVQHLIERCLLLHMSRDQCIKALAEH-AGIRPLVTLTVWRE 60 (93)
Q Consensus 15 p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW~~ 60 (93)
+.+|+..|+.+.++.+.++=.++++.++|..+ ..|-|.+|.+|=..
T Consensus 107 s~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~ 153 (260)
T 2ozb_B 107 SEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGAS 153 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcH
Confidence 34589999999999999999999999999988 55999999887443
No 19
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=37.55 E-value=77 Score=20.05 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=38.0
Q ss_pred cccchhhHHHHHHHHHHHHH-hc-CCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 034472 12 HCHPHSYIRMVQHLIERCLL-LH-MSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64 (93)
Q Consensus 12 ~~~p~s~I~~VQ~LIErCLq-ly-Msk~Evv~~L~~~a~I~P~fT~~VW~~LEke 64 (93)
+-.|..|+.+=.-||..++. -. ++++++-.. .+|++.-+.-||+-+.+.
T Consensus 35 rL~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~----~kiD~~K~~~iydf~~~~ 85 (88)
T 2elj_A 35 KILPKPYLVLKEVMFRELLKTGGNLSKSACREL----LNIDPIKANRIYDFFQSQ 85 (88)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH----TTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHH----HcccHHHHHHHHHHHHHc
Confidence 44688899999999999987 35 667665433 689999999999777653
No 20
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=36.14 E-value=41 Score=20.48 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHHHHhCHHHHHHHh
Q 034472 50 RPLVTLTVWRELQKENKDFFRAYF 73 (93)
Q Consensus 50 ~P~fT~~VW~~LEkeNpeFFkaY~ 73 (93)
+|..-..+.++|.+.||+.++...
T Consensus 23 NP~~L~~lLqql~~~nP~l~~~I~ 46 (61)
T 2f4m_B 23 NPSLLPALLQQIGRENPQLLQQIS 46 (61)
T ss_dssp CGGGHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHCHHHHHHHH
Confidence 799999999999999999998653
No 21
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=35.06 E-value=50 Score=19.13 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhC
Q 034472 32 LHMSRDQCIKALAEHAGIRPLVTLTVWRELQKEN 65 (93)
Q Consensus 32 lyMsk~Evv~~L~~~a~I~P~fT~~VW~~LEkeN 65 (93)
-.+|..|+.+.|....++.|.-...+-+.|++..
T Consensus 22 ~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kG 55 (82)
T 1p6r_A 22 SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG 55 (82)
T ss_dssp SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCC
Confidence 4689999999998766799999999999998753
No 22
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=34.36 E-value=52 Score=20.31 Aligned_cols=26 Identities=4% Similarity=0.079 Sum_probs=22.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhC
Q 034472 40 IKALAEHAGIRPLVTLTVWRELQKEN 65 (93)
Q Consensus 40 v~~L~~~a~I~P~fT~~VW~~LEkeN 65 (93)
++.|.++++|+|.--....++|+++.
T Consensus 19 v~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 19 AAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34566788999999999999999987
No 23
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=34.21 E-value=94 Score=21.48 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcC--------------CHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhhccCCCC
Q 034472 19 IRMVQHLIERCLLLHM--------------SRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFHSISPRP 80 (93)
Q Consensus 19 I~~VQ~LIErCLqlyM--------------sk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~rl~~k~ 80 (93)
......||-++|.-+. ...+++.+|.+ |=.+||+.++.+|+.+-.++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr~-----------vgdele~~~~~~f~~m~~~L~it~ 69 (157)
T 4hw4_A 5 YRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRR-----------VGDGVQRNHETAFQGMLRKLDIKN 69 (157)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHHHHH-----------HHHHHHHHTHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCCCCCCchHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456677777777766 34566666644 447899999999999987777655
No 24
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=33.93 E-value=56 Score=19.34 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 034472 32 LHMSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64 (93)
Q Consensus 32 lyMsk~Evv~~L~~~a~I~P~fT~~VW~~LEke 64 (93)
-.++..|+.+.+.+..+|++.-.+.+-+.|++.
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 357888888777889999999999999999985
No 25
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=32.46 E-value=1.1e+02 Score=20.29 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=36.7
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 034472 12 HCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 12 ~~~p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~~LEk 63 (93)
+-.|..|+.+=.-||..++...--+..-+..+ .+|++.-+.-||.-|.+
T Consensus 53 rL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l---~kID~~K~~rIydff~~ 101 (108)
T 2cuj_A 53 RLVPGAYLEYKSALLNECHKQGGLRLAQARAL---IKIDVNKTRKIYDFLIR 101 (108)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHH---HTSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHH---hcccHHHHHHHHHHHHH
Confidence 44688899999999999987544444444444 57999999999977665
No 26
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=32.39 E-value=43 Score=21.10 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhCHHHHHHHhhccCCCCCccccc
Q 034472 52 LVTLTVWRELQKENKDFFRAYFHSISPRPFMSKTS 86 (93)
Q Consensus 52 ~fT~~VW~~LEkeNpeFFkaY~~rl~~k~~~s~~~ 86 (93)
.++..+|+.++++=-+.-.+|+.+-..++-|+++|
T Consensus 58 ~~~~~~~~~l~~~l~~~L~~yH~~~P~~~G~~kee 92 (135)
T 2v9v_A 58 AISTERYQAWWQAVTRALEEFHSRYPLRPGLAREE 92 (135)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHH
Confidence 58899999999999999999999988888887765
No 27
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=31.61 E-value=34 Score=26.09 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCChhhHHHHH
Q 034472 16 HSYIRMVQHLIERCLLLHMSRDQCIKALAEH-AGIRPLVTLTVW 58 (93)
Q Consensus 16 ~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW 58 (93)
.+|+..|+.+.++-+.++=.++++.++|+.+ ..|-|.+|.+|=
T Consensus 94 ~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG 137 (255)
T 3icx_A 94 EDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVG 137 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhc
Confidence 3489999999999999999999999999998 459999997763
No 28
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=30.03 E-value=45 Score=21.03 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=22.6
Q ss_pred cCCChhhHHHHHHHHHHhCHHHHHHHh
Q 034472 47 AGIRPLVTLTVWRELQKENKDFFRAYF 73 (93)
Q Consensus 47 a~I~P~fT~~VW~~LEkeNpeFFkaY~ 73 (93)
..=+|..-..+.++|.+.||+.++...
T Consensus 22 vqqNP~lL~~lLqqL~~~NPqL~q~I~ 48 (72)
T 1pve_A 22 IQQNPSLLPALLQQIGRENPQLLQQIS 48 (72)
T ss_dssp HTTCGGGHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 334899999999999999999988653
No 29
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=29.74 E-value=1e+02 Score=19.20 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhhc
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFHS 75 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~r 75 (93)
||-+|..+.+.+-+ .++..-..+|.+|.+|=.|+-+++...
T Consensus 1 M~l~elQ~~v~~~~-~~~~~~~~~~~kL~eE~gEl~e~~~~~ 41 (100)
T 2q73_A 1 MKLSELQSHIKEFD-YAPEQSEHYFFKLIEEVGELSESIRKG 41 (100)
T ss_dssp CCHHHHHHHHHHHC-CCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHh-hccCChHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777775543 566666789999999999999998543
No 30
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=29.72 E-value=1.1e+02 Score=19.42 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=36.3
Q ss_pred cccchhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 034472 12 HCHPHSYIRMVQHLIERCLLLH-MSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64 (93)
Q Consensus 12 ~~~p~s~I~~VQ~LIErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~~LEke 64 (93)
+-.|..|+.+=.-||..++... ++++++ ..+ .+|++.-+.-||.-+.+.
T Consensus 35 rL~P~~YL~~K~~li~E~~~~g~l~k~da-~~~---~kiD~~K~~~iydf~~~~ 84 (90)
T 2aqe_A 35 RLVPGAYLEYKSALLNECHKQGGLRLAQA-RAL---IKIDVNKTRKIYDFLIRE 84 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHSCCCHHHH-HTT---SSSSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcHHHH-HHH---HcccHHHHHHHHHHHHHc
Confidence 4468889999999999998744 444443 333 789999999999776653
No 31
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=29.69 E-value=1.2e+02 Score=20.08 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhc-------CCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhhccCCCC
Q 034472 20 RMVQHLIERCLLLH-------MSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFHSISPRP 80 (93)
Q Consensus 20 ~~VQ~LIErCLqly-------Msk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~rl~~k~ 80 (93)
.+|.+-|.-||+.- -...++..+|..- =++||+.++.+|+..-.++.+.+
T Consensus 5 ~L~~dyi~~~l~~~g~~~~~~~~p~~~~~~Lr~~-----------gdele~~~~~~f~~~~~~l~i~~ 61 (144)
T 2w3l_A 5 EIVMKYIHYKLSQRGYEWDAGADSEVVHKTLREA-----------GDDFSRRYRRDFAEMSSGLHLTP 61 (144)
T ss_dssp HHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHH-----------HHHHHHHTHHHHHHHHTTCCCCT
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcccHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHcCCCC
Confidence 35566666666532 1223555555432 38899999999999988776544
No 32
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=28.76 E-value=1.2e+02 Score=19.51 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhhc
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFHS 75 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~r 75 (93)
|+-+|..+.+.+ +..+|.....+|.+|.+|=.|+-+++...
T Consensus 21 m~l~elq~~i~~-~~~~~~~~~~~~~kL~eE~gEl~e~i~~~ 61 (114)
T 2q5z_A 21 MKLSELQSHIKE-FDYAPEQSEHYFFKLIEEVGELSESIRKG 61 (114)
T ss_dssp CBHHHHHHHHHH-HSCCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444322 33567666789999999999999998654
No 33
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=28.00 E-value=19 Score=25.58 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=34.5
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhhc
Q 034472 25 LIERCLLLH-MSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFHS 75 (93)
Q Consensus 25 LIErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~r 75 (93)
-+.|||.-| +++-+-++.+.-+.+ +.....++..|-.+-.+||+.|..-
T Consensus 71 R~Kr~l~aYlr~Rl~KI~~~~w~~~--~~l~~~~~~~LS~~E~~y~~~y~~l 120 (196)
T 2q9q_C 71 RNRRCTVAYLYDRLLRIRALRWEYG--SILPNALRFHMAAEEMEWFNNYKRS 120 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--SSCCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHhhCCHHHHHHHHHHHHH
Confidence 346899888 566677777765543 3334556788888889999999763
No 34
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=27.76 E-value=1.2e+02 Score=20.93 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=33.8
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCh
Q 034472 13 CHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRP 51 (93)
Q Consensus 13 ~~p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P 51 (93)
-.+.+..+.|++||..++..-++.||--..|++..|-.|
T Consensus 37 ~~spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~p 75 (114)
T 2p6v_A 37 XQSTETAANVXELVQNLLDGXIEAEDFTSRLYRELNSSP 75 (114)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred ccChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcCCC
Confidence 356678899999999999999999999999999876554
No 35
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=27.56 E-value=87 Score=20.52 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=21.8
Q ss_pred HHHHHHHH---hcCCChhhHHHHHHHHHHhCHHHH
Q 034472 38 QCIKALAE---HAGIRPLVTLTVWRELQKENKDFF 69 (93)
Q Consensus 38 Evv~~L~~---~a~I~P~fT~~VW~~LEkeNpeFF 69 (93)
++++.+.. ..+++|.+...+|+.+-+....+=
T Consensus 61 ~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~S~~~Q 95 (114)
T 3rmi_A 61 YQIKRLRKLAIDTHFDPDFAEKFLKFIIKEVVHQH 95 (114)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44444443 458889999999988877765543
No 36
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=27.31 E-value=37 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHh
Q 034472 33 HMSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYF 73 (93)
Q Consensus 33 yMsk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~ 73 (93)
-++++++++.|.++++..|.+..+..++ +|++.|.
T Consensus 252 ~~~~~~i~~fi~~~~~~~p~~~~ls~~~------~~~~~~~ 286 (298)
T 3ed3_A 252 SINKNDISKFLRDTFSITPNEGPFSRRS------EYIAYLK 286 (298)
T ss_dssp SCCHHHHHHHHHHHHTCCCSSSTTSHHH------HHHHHHH
T ss_pred cCCHHHHHHHHHhhcCCCCCcCCCchHH------HHHHHHh
Confidence 3799999999999999999998886644 7777765
No 37
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=27.22 E-value=44 Score=26.81 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCChhhHHHHH
Q 034472 16 HSYIRMVQHLIERCLLLHMSRDQCIKALAEH-AGIRPLVTLTVW 58 (93)
Q Consensus 16 ~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW 58 (93)
.+|+..|+.+.++-++++=.++++.++|+.+ ..|-|.+|.+|=
T Consensus 228 ~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG 271 (376)
T 2nnw_A 228 QTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVG 271 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 4588999999999999999999999999988 559999998763
No 38
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=27.04 E-value=82 Score=19.95 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=23.7
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhc----CCChhhHHHHHHHHH
Q 034472 24 HLIERCLLL--HMSRDQCIKALAEHA----GIRPLVTLTVWRELQ 62 (93)
Q Consensus 24 ~LIErCLql--yMsk~Evv~~L~~~a----~I~P~fT~~VW~~LE 62 (93)
..|.+.+.. .+|..|+...|.++. |+.+. .++||+-|.
T Consensus 97 ~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S-~sTV~r~L~ 140 (149)
T 1k78_A 97 EKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPS-VSSINRIIR 140 (149)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCC-HHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcC-HHHHHHHHH
Confidence 334444443 489999999997654 54433 466776665
No 39
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=26.76 E-value=61 Score=20.84 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 034472 20 RMVQHLIERCLLLHMSRDQCIKAL 43 (93)
Q Consensus 20 ~~VQ~LIErCLqlyMsk~Evv~~L 43 (93)
+.|..|+|-|+....+-+|+|..+
T Consensus 22 ~v~eKl~ElC~~y~~~~~e~V~ew 45 (78)
T 4e2i_2 22 ALIEKLVELCVQYGQNEEGMVGEL 45 (78)
T ss_dssp HHHHHHHTHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 588999999999999999998765
No 40
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=26.70 E-value=35 Score=26.66 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=23.7
Q ss_pred cCCChhhHHHHHHHHHHhCHHHHHHHhhccC
Q 034472 47 AGIRPLVTLTVWRELQKENKDFFRAYFHSIS 77 (93)
Q Consensus 47 a~I~P~fT~~VW~~LEkeNpeFFkaY~~rl~ 77 (93)
.|.-|.+ +||++...=||+|+|-|..-..
T Consensus 168 ~G~~pe~--tvw~qv~~i~~~iyKLyeEL~~ 196 (290)
T 3c18_A 168 KGAHPEV--VVWEQARLDDPDVYKLYEQLLL 196 (290)
T ss_dssp TTCCCCT--THHHHHHHHCHHHHHHHHHHHT
T ss_pred cCCcCch--hHHHHHHhcCHHHHHHHHHHhc
Confidence 5667766 5999999999999999976544
No 41
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=26.34 E-value=1.4e+02 Score=24.99 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=41.1
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCh--hhHHHHHHHHH
Q 034472 14 HPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRP--LVTLTVWRELQ 62 (93)
Q Consensus 14 ~p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P--~fT~~VW~~LE 62 (93)
+|.+.++.+|++|.+||..=-=+||+.-.|-+|-.=+| .-..-.|+-|-
T Consensus 152 ~~~~~l~~~~~i~~~~~~~~~LrDEiycQl~kQ~t~np~~~s~~rgW~Ll~ 202 (655)
T 3pvl_A 152 RPTSNLEKLHFIIGNGILRPALRDEIYCQISKQLTHNPSKSSYARGWILVS 202 (655)
T ss_dssp SCCCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTSSCCCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcChhhhhHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 78899999999999999999999999999999965555 44556787775
No 42
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=26.19 E-value=70 Score=22.11 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Q 034472 17 SYIRMVQHLIERCLL----LHMSRDQCIKALAE 45 (93)
Q Consensus 17 s~I~~VQ~LIErCLq----lyMsk~Evv~~L~~ 45 (93)
...+.+.+||.+||+ ...|-+|+++.|.+
T Consensus 301 ~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~ 333 (342)
T 1b6c_B 301 EALRVMAKIMRECWYANGAARLTALRIKKTLSQ 333 (342)
T ss_dssp HHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence 456789999999995 56778888888754
No 43
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=25.89 E-value=46 Score=23.31 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHh
Q 034472 37 DQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYF 73 (93)
Q Consensus 37 ~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~ 73 (93)
+|++..|.++-|| .+|..-|+-+. -=++||+.|.
T Consensus 48 eevA~~lA~~EgI--eLTe~HWeVI~-flR~fY~e~~ 81 (132)
T 1yx3_A 48 PGVADVMAKQDNL--ELTEEHWDIIN-FLREYYEEYQ 81 (132)
T ss_dssp HHHHHHHHHTTTC--CCCHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHcCC--CcCHHHHHHHH-HHHHHHHHHC
Confidence 7899999999999 49999997664 2234444443
No 44
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=25.81 E-value=69 Score=20.93 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhC
Q 034472 39 CIKALAEHAGIRPLVTLTVWRELQKEN 65 (93)
Q Consensus 39 vv~~L~~~a~I~P~fT~~VW~~LEkeN 65 (93)
.++.|++..+|.|.+..-|..+|.+..
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aG 51 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKAD 51 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 778899999999999999999998753
No 45
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=25.70 E-value=68 Score=20.41 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=22.2
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhC
Q 034472 40 IKALAEHAGIRPLVTLTVWRELQKEN 65 (93)
Q Consensus 40 v~~L~~~a~I~P~fT~~VW~~LEkeN 65 (93)
+..|.++++|+|.-.....++|+++.
T Consensus 19 v~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 19 AKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34567788999999999999999887
No 46
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=25.69 E-value=93 Score=21.06 Aligned_cols=40 Identities=25% Similarity=0.546 Sum_probs=29.9
Q ss_pred HHHHHHHH-HhcCCChhhHHHHHHHHHHhCHHHHHHHhhccCCCCCc
Q 034472 37 DQCIKALA-EHAGIRPLVTLTVWRELQKENKDFFRAYFHSISPRPFM 82 (93)
Q Consensus 37 ~Evv~~L~-~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~rl~~k~~~ 82 (93)
+|+...|. ++-||+ .+|..-|+-+ +|-+.||..-..-|.+
T Consensus 32 eevA~~lA~~~egI~-eLTe~HW~VI-----~flR~~Y~e~~~~P~i 72 (111)
T 1ji8_A 32 EKVAEWLARELEGIQ-KMTEEHWKLV-----KYLREYWETFGTCPPI 72 (111)
T ss_dssp HHHHHHHHHHHTCCS-SCCHHHHHHH-----HHHHHHTTTTSCCCCS
T ss_pred HHHHHHHHHhcCCch-hcCHHHHHHH-----HHHHHHHHHHCCCCcH
Confidence 78999999 999994 3999999766 4666666665554443
No 47
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=25.51 E-value=50 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 034472 4 NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALA 44 (93)
Q Consensus 4 ~~~~~~c~~~~p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~ 44 (93)
.||..+|-+|.|- .|..+..|+++= -.-|.+|+-++|+
T Consensus 96 ~~~~~QCG~CtpG-~imsa~all~~~--~~pt~~eI~~~l~ 133 (166)
T 1n62_A 96 MMHGLQCGYCTPG-MIMRSHRLLQEN--PSPTEAEIRFGIG 133 (166)
T ss_dssp HTTCCSSCSSHHH-HHHHHHHHHHHC--SSCCHHHHHHHTT
T ss_pred HcCCccCCccchh-HHHHHHHHHHcC--CCCCHHHHHHHHc
Confidence 4788999999994 777777887763 3567888887775
No 48
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold, structural genomics, joint center for struct genomics, JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Probab=25.08 E-value=1.3e+02 Score=21.37 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhh
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFH 74 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~ 74 (93)
++.+++.+.+.++.|.-|. .|..+.+..|+++++|..
T Consensus 9 ~~~~~~~~~~~~~~G~~~~----~~~~~~~~~P~~~~~~~~ 45 (263)
T 2q0t_A 9 PDPSRLRDELVRLHGKASP----EWDSLVRLDPRFVDAYLK 45 (263)
T ss_dssp CCHHHHHHHHHHHHSSCCH----HHHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcchhH----HHHHHHHhCHHHHHHHHH
Confidence 5667888889999886443 467788899999988743
No 49
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.68 E-value=87 Score=21.19 Aligned_cols=42 Identities=10% Similarity=0.293 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH----HHhcCCChhhHHHHHHHHHH
Q 034472 20 RMVQHLIERCLLLHMSRDQCIKAL----AEHAGIRPLVTLTVWRELQK 63 (93)
Q Consensus 20 ~~VQ~LIErCLqlyMsk~Evv~~L----~~~a~I~P~fT~~VW~~LEk 63 (93)
+.|..++|-|+....+-+|.|+.+ ....|++|-. .-..++|.
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~--enL~~FEh 90 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTS--EILNSFEH 90 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCH--HHHHHHHH
Confidence 678999999999999999988654 1234666644 44455553
No 50
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=24.37 E-value=54 Score=22.98 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 034472 4 NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALA 44 (93)
Q Consensus 4 ~~~~~~c~~~~p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~ 44 (93)
.||..+|-+|.|- .|..+..|+++= -.-|.+|+-++|+
T Consensus 95 ~~~~~QCG~CtpG-~imsa~all~~~--~~pt~~ei~~~l~ 132 (163)
T 1ffv_A 95 KEHGLQCGFCTPG-MLMRAYRFLQEN--PNPTEAEIRMGMT 132 (163)
T ss_dssp HTTCCSSCSSHHH-HHHHHHHHHHHC--SSCCHHHHHHHTT
T ss_pred HhCCccCccccHh-HHHHHHHHHHcC--CCCCHHHHHHHHc
Confidence 4788999999994 777777787762 3567788877775
No 51
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=24.09 E-value=1.5e+02 Score=19.28 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhC
Q 034472 30 LLLHMSRDQCIKALAEHAGIRPLVTLTVWRELQKEN 65 (93)
Q Consensus 30 LqlyMsk~Evv~~L~~~a~I~P~fT~~VW~~LEkeN 65 (93)
+.+.+|++|+.+. .|+.|.--+-+.++|++++
T Consensus 172 ~~~~~t~~~iA~~----lg~sr~tvsR~l~~L~~~g 203 (231)
T 3e97_A 172 EVLPLGTQDIMAR----TSSSRETVSRVLKRLEAHN 203 (231)
T ss_dssp TEECCCHHHHHHH----HTCCHHHHHHHHHHHHHTT
T ss_pred EecCCCHHHHHHH----hCCcHHHHHHHHHHHHHCC
Confidence 3456788876655 5899999999999999875
No 52
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=24.02 E-value=1.3e+02 Score=20.36 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCh
Q 034472 15 PHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRP 51 (93)
Q Consensus 15 p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P 51 (93)
+.+..+.|+.||...+..-++.||--..|++..|-.|
T Consensus 24 ~pev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~p 60 (105)
T 2h7b_A 24 SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPL 60 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHSSSSC
T ss_pred ChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCC
Confidence 5677899999999999999999999999998866554
No 53
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=24.00 E-value=37 Score=23.70 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=15.8
Q ss_pred hhHHHHHHHHH-HHHHhcCC
Q 034472 17 SYIRMVQHLIE-RCLLLHMS 35 (93)
Q Consensus 17 s~I~~VQ~LIE-rCLqlyMs 35 (93)
.+++.+..||+ .|.+.||.
T Consensus 91 ~e~rvl~rvi~emC~~qy~~ 110 (121)
T 1tpx_A 91 TDIKIMERVVEQMCITQYQR 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888999997 79999874
No 54
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=23.63 E-value=23 Score=22.45 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---ChhhHHHHHHHHHHhC---HHHHHHHhhccC
Q 034472 19 IRMVQHLIERCLLLHMSRDQCIKALAEHAGI---RPLVTLTVWRELQKEN---KDFFRAYFHSIS 77 (93)
Q Consensus 19 I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I---~P~fT~~VW~~LEkeN---peFFkaY~~rl~ 77 (93)
|+.+-.-|=.=|...|.--+=|-.+....|. +|.=-..|..++.+.+ |+|-+..+....
T Consensus 21 ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~p~~~e~i~r~~r 85 (90)
T 2vkl_A 21 IDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGR 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHh
Confidence 4444333333344444444444444444443 5555667777777655 777777665443
No 55
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=23.44 E-value=66 Score=20.05 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 034472 34 MSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64 (93)
Q Consensus 34 Msk~Evv~~L~~~a~I~P~fT~~VW~~LEke 64 (93)
|+--|+++.|.+..+|+|+-...+.++||++
T Consensus 23 ~~gyel~~~l~~~~~i~~~tly~~L~~Le~~ 53 (108)
T 3l7w_A 23 SYGYDISQTIKLIASIKESTLYPILKKLEKA 53 (108)
T ss_dssp EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhCCCcChHHHHHHHHHHC
Confidence 4445888888888899999999999999976
No 56
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.86 E-value=81 Score=19.18 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 034472 33 HMSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64 (93)
Q Consensus 33 yMsk~Evv~~L~~~a~I~P~fT~~VW~~LEke 64 (93)
-+|..|+.+.|...-+++|.-...+-+.|++.
T Consensus 24 ~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k 55 (126)
T 1sd4_A 24 SVSANEIVVEIQKYKEVSDKTIRTLITRLYKK 55 (126)
T ss_dssp SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Confidence 57889999998766678999999999999864
No 57
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=22.79 E-value=91 Score=20.52 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhC
Q 034472 40 IKALAEHAGIRPLVTLTVWRELQKEN 65 (93)
Q Consensus 40 v~~L~~~a~I~P~fT~~VW~~LEkeN 65 (93)
++.|++..+|.|.+..-|-++|.+..
T Consensus 31 ~~~IA~~~~i~~~~l~kil~~L~~aG 56 (143)
T 3t8r_A 31 LKSIAEENNLSDLYLEQLVGPLRNAG 56 (143)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 56788889999999999999998754
No 58
>3i4h_X Endoribonuclease; hydrolase; 2.25A {Pyrococcus furiosus} PDB: 3pkm_A
Probab=22.74 E-value=89 Score=22.89 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhCHHHHHHHhhccCCCCC
Q 034472 52 LVTLTVWRELQKENKDFFRAYFHSISPRPF 81 (93)
Q Consensus 52 ~fT~~VW~~LEkeNpeFFkaY~~rl~~k~~ 81 (93)
.+...+++.|.+.||+|++..+.....|++
T Consensus 34 ~l~s~I~~~L~~~d~e~a~~LHd~~~fK~F 63 (273)
T 3i4h_X 34 YLQGLIYNAIKSSNPKLATYLHEVKGPKLF 63 (273)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHCCSCCSE
T ss_pred HHHHHHHHHHHhhCHHHHHHHhcCCCCCCE
Confidence 456677777887788888877776666663
No 59
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=22.74 E-value=2.5e+02 Score=21.23 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHhcCCH-------HHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhh
Q 034472 16 HSYIRMVQHLIERCLLLHMSR-------DQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFH 74 (93)
Q Consensus 16 ~s~I~~VQ~LIErCLqlyMsk-------~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~ 74 (93)
.+-++.|-..++++|....+. +.+++-| -++++..-..|...|++.+|++.+.=..
T Consensus 117 p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~IL---N~~d~~~e~~iL~~L~~~dpelAe~Ir~ 179 (279)
T 3pkr_A 117 PQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIF---NRLGQKSAKTTLARIESVDNKLAGAIKE 179 (279)
T ss_dssp HHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHH---HTSCHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCcHHHHHHHH---HcCChHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456788999999999887653 4455555 3478888889999999999999887543
No 60
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=22.71 E-value=82 Score=19.78 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhc-----CCHHHHHHHHHHhcCCC
Q 034472 19 IRMVQHLIERCLLLH-----MSRDQCIKALAEHAGIR 50 (93)
Q Consensus 19 I~~VQ~LIErCLqly-----Msk~Evv~~L~~~a~I~ 50 (93)
-..|+++|.+-+.-- +|.+++++.|.++ ||.
T Consensus 18 ~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~ 53 (76)
T 2ahq_A 18 QGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFK 53 (76)
T ss_dssp HHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSC
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCC
Confidence 367888888888776 9999999999665 665
No 61
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=22.70 E-value=95 Score=19.47 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=21.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhC
Q 034472 40 IKALAEHAGIRPLVTLTVWRELQKEN 65 (93)
Q Consensus 40 v~~L~~~a~I~P~fT~~VW~~LEkeN 65 (93)
++.|++..||.|.+..-+-+.|++..
T Consensus 29 ~~ela~~~~i~~~~v~~il~~L~~~G 54 (129)
T 2y75_A 29 LKSIAQTNNLSEHYLEQLVSPLRNAG 54 (129)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45677778999999999999999754
No 62
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=22.44 E-value=70 Score=22.09 Aligned_cols=40 Identities=8% Similarity=0.092 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCChhhHH
Q 034472 15 PHSYIRMVQHLIERCLLL----HMSRDQCIKALAEHAGIRPLVTL 55 (93)
Q Consensus 15 p~s~I~~VQ~LIErCLql----yMsk~Evv~~L~~~a~I~P~fT~ 55 (93)
+......+.++|.+||+. ..|-+|+++.|.. .++...+..
T Consensus 274 ~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~-~~~~~~~~~ 317 (326)
T 3uim_A 274 KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG-DGLAERWEE 317 (326)
T ss_dssp CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT-SSCSSSCC-
T ss_pred CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC-cchhhhhhh
Confidence 345668899999999975 6889999999965 445544443
No 63
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.34 E-value=1.2e+02 Score=17.24 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 034472 23 QHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64 (93)
Q Consensus 23 Q~LIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~~LEke 64 (93)
..+|++-|..+-|+.++. +..||.+. ++|++|++-
T Consensus 23 r~~I~~aL~~~gn~~~aA----~~LGIsr~---tL~rklkk~ 57 (61)
T 1g2h_A 23 AQVLKLFYAEYPSTRKLA----QRLGVSHT---AIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHSCSHHHHH----HHTTSCTH---HHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHH----HHhCCCHH---HHHHHHHHh
Confidence 445666666655666554 45689875 789998764
No 64
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=22.29 E-value=1.4e+02 Score=19.61 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCHHHHHHHhhcc
Q 034472 15 PHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVWRELQKENKDFFRAYFHSI 76 (93)
Q Consensus 15 p~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~~LEkeNpeFFkaY~~rl 76 (93)
|..+-.-+.+-|-.=|..-+|..++- +..+|.-. ++|++-| +++|||-++|..-+
T Consensus 10 Ptk~t~e~~e~I~~~i~~G~sl~~i~----~~~~~ps~--~T~~~W~-~~~~ef~e~~~~Ar 64 (140)
T 4dyq_A 10 PSDYMPEVADDICSLLSSGESLLKVC----KRPGMPDK--STVFRWL-AKHEDFRDKYAKAT 64 (140)
T ss_dssp CCSCCTTHHHHHHHHHHTTCCHHHHH----TSTTCCCH--HHHHHHH-HHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCcHHHHH----hcCCCCCH--HHHHHHH-HcCHHHHHHHHHHH
Confidence 44433334444554455677777655 45666212 3444444 57899999997643
No 65
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=21.29 E-value=1.2e+02 Score=21.21 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 034472 18 YIRMVQHLIERCLLL----HMSRDQCIKALAE 45 (93)
Q Consensus 18 ~I~~VQ~LIErCLql----yMsk~Evv~~L~~ 45 (93)
....+.++|++||+. ..|-+|+++.|.+
T Consensus 284 ~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 315 (322)
T 3soc_A 284 GMAMLCETIEECWDHDAEARLSAGCVGERITQ 315 (322)
T ss_dssp HHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 445689999999965 5788899888865
No 66
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=21.28 E-value=56 Score=20.31 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.4
Q ss_pred cCCHHHHHHHHHHhcCCC
Q 034472 33 HMSRDQCIKALAEHAGIR 50 (93)
Q Consensus 33 yMsk~Evv~~L~~~a~I~ 50 (93)
.||++|.+++|.+|-.+.
T Consensus 22 ~~s~deL~~~l~eqee~n 39 (64)
T 2hv8_D 22 SVSRDELMEAIQKQEEIN 39 (64)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 589999999998876443
No 67
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=20.88 E-value=1.4e+02 Score=18.66 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=21.9
Q ss_pred HHHHHHH---HhcCCChhhHHHHHHHHHHhCHHH
Q 034472 38 QCIKALA---EHAGIRPLVTLTVWRELQKENKDF 68 (93)
Q Consensus 38 Evv~~L~---~~a~I~P~fT~~VW~~LEkeNpeF 68 (93)
++++.+. ...+++|.+...+|+.+=+.....
T Consensus 56 ~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~~~ 89 (101)
T 3ret_A 56 AMLPERARWAEENGLDAPFVEGLFAQIIHWYIAE 89 (101)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4444444 446899999999999887665544
No 68
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=20.79 E-value=1.2e+02 Score=19.09 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=27.8
Q ss_pred ccccccc-hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCChh
Q 034472 9 PCLHCHP-HSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPL 52 (93)
Q Consensus 9 ~c~~~~p-~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P~ 52 (93)
=|--|.- -+-|+.|+.+ ..+|-.|.++.|.+.+||+..
T Consensus 60 ~Cf~cg~gGd~i~fv~~~------~~~sf~eA~~~La~~~gi~~~ 98 (103)
T 1d0q_A 60 HCFGCGAGGNAFTFLMDI------EGIPFVEAAKRLAAKAGVDLS 98 (103)
T ss_dssp EETTTCCEECHHHHHHHH------HTCCHHHHHHHHHHHHTCCCG
T ss_pred EECCCCCCCCHHHHHHHH------hCCCHHHHHHHHHHHhCCCCC
Confidence 3444442 2367788765 358999999999999999864
No 69
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=20.56 E-value=1.1e+02 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Q 034472 18 YIRMVQHLIERCLL----LHMSRDQCIKALAE 45 (93)
Q Consensus 18 ~I~~VQ~LIErCLq----lyMsk~Evv~~L~~ 45 (93)
....+.++|.+||+ ...|-+|+++.|.+
T Consensus 268 ~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~ 299 (301)
T 3q4u_A 268 TLTSLAKLMKECWYQNPSARLTALRIKKTLTK 299 (301)
T ss_dssp HHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcChhhCCCHHHHHHHHhc
Confidence 44678899999996 46788899888864
No 70
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=20.46 E-value=71 Score=25.85 Aligned_cols=46 Identities=20% Similarity=0.101 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCChhhHHHHHHHH
Q 034472 16 HSYIRMVQHLIERCLLLHMSRDQCIKALAEH-AGIRPLVTLTVWREL 61 (93)
Q Consensus 16 ~s~I~~VQ~LIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW~~L 61 (93)
.+|+..|+.+.++-+.++=.++++.++|+.+ ..|-|.+|.+|=..+
T Consensus 227 ~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~v 273 (388)
T 3pla_A 227 EDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPAL 273 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHH
Confidence 3488999999999999999999999999998 459999998775433
No 71
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=20.04 E-value=45 Score=21.22 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 034472 32 LHMSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64 (93)
Q Consensus 32 lyMsk~Evv~~L~~~a~I~P~fT~~VW~~LEke 64 (93)
--+|..|+.+.|....++.|.-...+-+.|++.
T Consensus 48 ~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K 80 (99)
T 2k4b_A 48 GEARVDEIYAQIPQELEWSLATVKTLLGRLVKK 80 (99)
T ss_dssp SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC
Confidence 357777777777665567788888888888875
No 72
>2ky5_A Platelet endothelial cell adhesion molecule; pecam-1, ITIM, signal transduction, membrane association, ST genomics, protein structure initiative; NMR {Homo sapiens}
Probab=20.02 E-value=58 Score=19.99 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=20.2
Q ss_pred HhcCCChhhHHHHHHHHHHhCHHHHHHHh
Q 034472 45 EHAGIRPLVTLTVWRELQKENKDFFRAYF 73 (93)
Q Consensus 45 ~~a~I~P~fT~~VW~~LEkeNpeFFkaY~ 73 (93)
-+-...-.=|.+|+-++.|.||+|-..=+
T Consensus 17 p~~al~~KgTeTVYSEIRKa~p~~~~nr~ 45 (55)
T 2ky5_A 17 SHKDLGKKDTETVYSEVRKAVPDAVESRY 45 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccchhhHHHHHhcCCccccccc
Confidence 33334555699999999999999876543
Done!