BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034476
         (93 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P10542|E1A_ADE41 Early E1A 27 kDa protein OS=Human adenovirus F serotype 41 PE=2
           SV=1
          Length = 251

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 12  SSPVAPTPAMTSCRKKKKDDATFLEDL--KDHIDEFVNASMEEHKT 55
           ++PV PTP   SCR++   D   +EDL  +D  DE +N S++  K+
Sbjct: 207 TAPVRPTPCRVSCRRRPAVDC--IEDLLEEDPTDEPLNLSLKRPKS 250


>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 protein OS=Homo sapiens GN=ST14
           PE=1 SV=2
          Length = 855

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 17  PTPAMTSCRK----KKKDDATFLEDLKDHIDEFVNASMEEHK-TCFSKTIKKMFGMSKVV 71
           P P   +CR     +K+       D  DH DE   +    H+ TC +K  K +F +   V
Sbjct: 452 PCPGQFTCRTGRCIRKELRCDGWADCTDHSDELNCSCDAGHQFTCKNKFCKPLFWVCDSV 511

Query: 72  AERNANTQEVESSLPLQT 89
            +   N+ E   S P QT
Sbjct: 512 NDCGDNSDEQGCSCPAQT 529


>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
          Length = 358

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 31  DATFLEDLKDHIDEFVNASMEEHKTCFSKTIK-KMFGMSKVVAE 73
           D++FL+ +K  I +F N  MEE K  + +  + + FG + VV+E
Sbjct: 92  DSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSE 135


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.121    0.323 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,671,814
Number of Sequences: 539616
Number of extensions: 1023020
Number of successful extensions: 3127
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3124
Number of HSP's gapped (non-prelim): 12
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)