Query 034476
Match_columns 93
No_of_seqs 37 out of 39
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 04:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a1g_E Protein CASC5; cell cyc 27.4 18 0.00062 22.4 0.7 16 27-42 28-43 (53)
2 1pi1_A MOB1A; mitotic EXIT net 27.2 50 0.0017 23.8 3.1 28 40-67 134-164 (185)
3 1uz3_A EMSY protein; chromatin 26.3 67 0.0023 21.8 3.4 27 36-62 48-74 (102)
4 1wy3_A Villin; structural prot 19.2 38 0.0013 18.9 0.9 10 61-70 6-15 (35)
5 1und_A Advillin, P92; actin bi 18.8 39 0.0013 19.0 0.9 10 61-70 8-17 (37)
6 2xqo_A Cellulosome enzyme, doc 17.9 66 0.0023 24.9 2.2 9 84-92 113-121 (243)
7 2hjn_A MPS1 binder 1, maintena 16.6 87 0.003 23.6 2.6 28 40-67 187-217 (236)
8 2elu_A Zinc finger protein 406 15.7 1.4E+02 0.0047 17.2 2.7 23 18-44 9-31 (37)
9 2f3y_B Voltage-dependent L-typ 14.2 90 0.0031 16.8 1.5 14 32-47 4-17 (26)
10 3vu7_H DNA repair protein REV1 13.9 85 0.0029 21.3 1.8 33 32-64 35-70 (124)
No 1
>4a1g_E Protein CASC5; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens}
Probab=27.42 E-value=18 Score=22.44 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.3
Q ss_pred ccCCCchhhHHHHHHH
Q 034476 27 KKKDDATFLEDLKDHI 42 (93)
Q Consensus 27 ~~~e~atF~e~lKDh~ 42 (93)
.+-|-++||++||.|-
T Consensus 28 ~KIDttSFLanLk~h~ 43 (53)
T 4a1g_E 28 TKIDTTSFLANLKLHT 43 (53)
T ss_pred eeccHHHHHHHHHhhc
Confidence 4567889999999985
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=27.24 E-value=50 Score=23.77 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=21.7
Q ss_pred HHHHHHhhcChHHHH-hHHHHHHH--HHhch
Q 034476 40 DHIDEFVNASMEEHK-TCFSKTIK--KMFGM 67 (93)
Q Consensus 40 Dh~~eFi~As~dEHk-tCfk~ti~--kmFG~ 67 (93)
.|++.|.+....-|. +||+.-+- +.|++
T Consensus 134 ~Hf~~~~~l~~e~hlNt~f~hF~~F~~ef~L 164 (185)
T 1pi1_A 134 QHFDSVMQLQEEAHLNTSFKHFIFFVQEFNL 164 (185)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcceehhhHHHHHHHHHHhCC
Confidence 489999999999999 67876443 55554
No 3
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=26.32 E-value=67 Score=21.80 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcChHHHHhHHHHHHH
Q 034476 36 EDLKDHIDEFVNASMEEHKTCFSKTIK 62 (93)
Q Consensus 36 e~lKDh~~eFi~As~dEHktCfk~ti~ 62 (93)
|.|-.+++...|+|-|||+..+++-+.
T Consensus 48 e~LLt~LR~~L~IS~eeH~~elrr~~s 74 (102)
T 1uz3_A 48 KDLLGELSKVLSISTERHRAEVRRAVN 74 (102)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhcc
Confidence 556667778889999999999887654
No 4
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=19.17 E-value=38 Score=18.89 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=8.1
Q ss_pred HHHHhchhhH
Q 034476 61 IKKMFGMSKV 70 (93)
Q Consensus 61 i~kmFG~sK~ 70 (93)
+.++|||++.
T Consensus 6 F~~vFgmsr~ 15 (35)
T 1wy3_A 6 FKAVFGMTRS 15 (35)
T ss_dssp HHHHHSSCHH
T ss_pred HHHHHCCCHH
Confidence 5789999875
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=18.77 E-value=39 Score=19.00 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=8.1
Q ss_pred HHHHhchhhH
Q 034476 61 IKKMFGMSKV 70 (93)
Q Consensus 61 i~kmFG~sK~ 70 (93)
+.++|||++.
T Consensus 8 F~~vFgmsr~ 17 (37)
T 1und_A 8 FVSVFGITRG 17 (37)
T ss_dssp HHHHHSSCHH
T ss_pred HHHHHCcCHH
Confidence 6789999875
No 6
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=17.93 E-value=66 Score=24.85 Aligned_cols=9 Identities=44% Similarity=0.335 Sum_probs=7.1
Q ss_pred ccccccccc
Q 034476 84 SLPLQTTIS 92 (93)
Q Consensus 84 ~lplqt~v~ 92 (93)
+=||||.++
T Consensus 113 yGplQTAeT 121 (243)
T 2xqo_A 113 FGPLQTAET 121 (243)
T ss_dssp ETTTTEEGG
T ss_pred ccchHHHHH
Confidence 569999875
No 7
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=16.58 E-value=87 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=21.1
Q ss_pred HHHHHHhhcChHHHH-hHHHHHH--HHHhch
Q 034476 40 DHIDEFVNASMEEHK-TCFSKTI--KKMFGM 67 (93)
Q Consensus 40 Dh~~eFi~As~dEHk-tCfk~ti--~kmFG~ 67 (93)
.||+.|.+.....|. +||+.-+ -+.|++
T Consensus 187 ~Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~L 217 (236)
T 2hjn_A 187 HHFNEILELNLQTVLNTSFRHFCLFAQEFEL 217 (236)
T ss_dssp HSHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccchhhhhhHHHHHHHHHHhcC
Confidence 589999999999998 5677643 356654
No 8
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=15.69 E-value=1.4e+02 Score=17.17 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=15.9
Q ss_pred CcccchhhhccCCCchhhHHHHHHHHH
Q 034476 18 TPAMTSCRKKKKDDATFLEDLKDHIDE 44 (93)
Q Consensus 18 ~~a~sscRk~~~e~atF~e~lKDh~~e 44 (93)
++---+|+|+-+| |.+|-.||+|
T Consensus 9 kqhcrfckkkysd----vknlikhire 31 (37)
T 2elu_A 9 KQHCRFCKKKYSD----VKNLIKHIRD 31 (37)
T ss_dssp CCEETTTTEECSS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3455678888775 4677778876
No 9
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=14.16 E-value=90 Score=16.83 Aligned_cols=14 Identities=36% Similarity=0.683 Sum_probs=9.8
Q ss_pred chhhHHHHHHHHHHhh
Q 034476 32 ATFLEDLKDHIDEFVN 47 (93)
Q Consensus 32 atF~e~lKDh~~eFi~ 47 (93)
|||| +.|||+.|+.
T Consensus 4 at~L--IqdyfRkfkk 17 (26)
T 2f3y_B 4 ATFL--IQEYFRKFKK 17 (26)
T ss_pred hhhh--HHHHHHHHHH
Confidence 5565 6788888864
No 10
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=13.90 E-value=85 Score=21.33 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHhh---cChHHHHhHHHHHHHHH
Q 034476 32 ATFLEDLKDHIDEFVN---ASMEEHKTCFSKTIKKM 64 (93)
Q Consensus 32 atF~e~lKDh~~eFi~---As~dEHktCfk~ti~km 64 (93)
++=+.++|+.|.+++. .|.++.=..|.+++.++
T Consensus 35 ~t~l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~l 70 (124)
T 3vu7_H 35 AVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDL 70 (124)
T ss_dssp SCSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999986 45666777777777654
Done!