Query 034476
Match_columns 93
No_of_seqs 37 out of 39
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 04:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034476.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034476hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pi1a_ a.29.7.1 (A:) Mob1a {H 47.8 7 0.00051 26.8 3.1 28 40-67 134-164 (185)
2 d1y6da_ a.24.10.5 (A:) Phospho 27.2 40 0.0029 19.1 3.8 39 33-71 29-67 (114)
3 d1n1ja_ a.22.1.3 (A:) Nuclear 23.0 25 0.0019 20.3 2.3 18 30-47 70-87 (87)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 20.3 16 0.0012 19.2 0.9 11 60-70 5-15 (35)
5 d1bnba_ g.9.1.1 (A:) Beta-defe 20.3 9.1 0.00066 21.0 -0.2 10 18-27 29-38 (38)
6 d1bl0a1 a.4.1.8 (A:9-62) MarA 20.1 30 0.0022 17.7 2.0 37 32-68 2-47 (54)
7 d1e0ea_ a.4.10.1 (A:) N-termin 19.5 22 0.0016 19.5 1.4 24 51-74 10-35 (46)
8 d3b7sa3 d.92.1.13 (A:209-460) 18.8 36 0.0027 21.7 2.6 37 26-62 187-225 (252)
9 d1unda_ a.14.1.1 (A:) Advillin 17.6 20 0.0015 18.9 0.9 11 60-70 6-16 (36)
10 d1q23a_ c.43.1.1 (A:) Chloramp 17.0 20 0.0015 23.6 1.0 17 31-47 197-213 (214)
No 1
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.76 E-value=7 Score=26.77 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=22.8
Q ss_pred HHHHHHhhcChHHHH-hHHHH--HHHHHhch
Q 034476 40 DHIDEFVNASMEEHK-TCFSK--TIKKMFGM 67 (93)
Q Consensus 40 Dh~~eFi~As~dEHk-tCfk~--ti~kmFG~ 67 (93)
-||+.|.+.....|. +||+. .+-+.|++
T Consensus 134 ~Hf~~~~~l~~e~hlNt~FkHF~~f~~ef~L 164 (185)
T d1pi1a_ 134 QHFDSVMQLQEEAHLNTSFKHFIFFVQEFNL 164 (185)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999 88887 44477765
No 2
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}
Probab=27.18 E-value=40 Score=19.12 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHhhcChHHHHhHHHHHHHHHhchhhHh
Q 034476 33 TFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVV 71 (93)
Q Consensus 33 tF~e~lKDh~~eFi~As~dEHktCfk~ti~kmFG~sK~v 71 (93)
.|++++.+.+.+...+-...-+.=+.....++=|.+-.+
T Consensus 29 ~F~~~~~~~~~~L~~a~~~~d~~~l~~~aH~LKGsa~~~ 67 (114)
T d1y6da_ 29 IFLGEMDSYIGTLTELQGSEQLLYLKEISHALKSSAASF 67 (114)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHc
Confidence 699999999999999998888888888877665554433
No 3
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.98 E-value=25 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.0
Q ss_pred CCchhhHHHHHHHHHHhh
Q 034476 30 DDATFLEDLKDHIDEFVN 47 (93)
Q Consensus 30 e~atF~e~lKDh~~eFi~ 47 (93)
+-..|++.|+.|.++|++
T Consensus 70 ~~~~fl~~l~~~~~~~ke 87 (87)
T d1n1ja_ 70 GFDSYVEPLKLYLQKFRE 87 (87)
T ss_dssp TCGGGHHHHHHHHHHHHC
T ss_pred CcHhHHHHHHHHHHHhcC
Confidence 356899999999999864
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.31 E-value=16 Score=19.18 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.6
Q ss_pred HHHHHhchhhH
Q 034476 60 TIKKMFGMSKV 70 (93)
Q Consensus 60 ti~kmFG~sK~ 70 (93)
-++++|||++.
T Consensus 5 dF~~vfgmsr~ 15 (35)
T d1yu8x1 5 DFKAVFGMTRS 15 (35)
T ss_dssp HHHHHHSSCHH
T ss_pred HHHHHHCCCHH
Confidence 36789999875
No 5
>d1bnba_ g.9.1.1 (A:) Beta-defensin, BD {Cow (Bos taurus), BD12 [TaxId: 9913]}
Probab=20.29 E-value=9.1 Score=21.01 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=7.6
Q ss_pred Ccccchhhhc
Q 034476 18 TPAMTSCRKK 27 (93)
Q Consensus 18 ~~a~sscRk~ 27 (93)
.|.+.|||++
T Consensus 29 g~~VkCCR~w 38 (38)
T d1bnba_ 29 GRPVKCCRSW 38 (38)
T ss_dssp TTTEEEEECC
T ss_pred CCccchhcCC
Confidence 3678899985
No 6
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=20.08 E-value=30 Score=17.73 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHhhcChHH---------HHhHHHHHHHHHhchh
Q 034476 32 ATFLEDLKDHIDEFVNASMEE---------HKTCFSKTIKKMFGMS 68 (93)
Q Consensus 32 atF~e~lKDh~~eFi~As~dE---------HktCfk~ti~kmFG~s 68 (93)
+..++.+.++|++=++-+-+= ...=|...+++.+|++
T Consensus 2 ~~~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 2 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS 47 (54)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 445666666665544322111 1222455566666654
No 7
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=19.50 E-value=22 Score=19.51 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=16.6
Q ss_pred HHHHhHHH--HHHHHHhchhhHhhhh
Q 034476 51 EEHKTCFS--KTIKKMFGMSKVVAER 74 (93)
Q Consensus 51 dEHktCfk--~ti~kmFG~sK~vae~ 74 (93)
+||...-. +++...||.++.||..
T Consensus 10 e~H~k~H~N~~~L~~~F~lp~~vAr~ 35 (46)
T d1e0ea_ 10 EEHEKYHSNVKELSHKFGIPNLVARQ 35 (46)
T ss_dssp HHHHHHCCCHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHcCCCHHHHHH
Confidence 44444332 4678999999999964
No 8
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.80 E-value=36 Score=21.67 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=27.5
Q ss_pred hccCCCchhhHHHHHHHHHH--hhcChHHHHhHHHHHHH
Q 034476 26 KKKKDDATFLEDLKDHIDEF--VNASMEEHKTCFSKTIK 62 (93)
Q Consensus 26 k~~~e~atF~e~lKDh~~eF--i~As~dEHktCfk~ti~ 62 (93)
+..+++..|.+-||+++..| .+++.++=+.++.+...
T Consensus 187 ~~iG~~~~f~~~lr~yl~~~~~~~~~~~df~~~l~~~~~ 225 (252)
T d3b7sa3 187 QLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFK 225 (252)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHTG
T ss_pred HHhccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Confidence 35777788999999999875 67888886666655443
No 9
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.60 E-value=20 Score=18.87 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.5
Q ss_pred HHHHHhchhhH
Q 034476 60 TIKKMFGMSKV 70 (93)
Q Consensus 60 ti~kmFG~sK~ 70 (93)
-+.++|||++.
T Consensus 6 dF~~vFgmsr~ 16 (36)
T d1unda_ 6 DFVSVFGITRG 16 (36)
T ss_dssp HHHHHHSSCHH
T ss_pred HHHHHHCcCHH
Confidence 36789999875
No 10
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=17.00 E-value=20 Score=23.63 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.4
Q ss_pred CchhhHHHHHHHHHHhh
Q 034476 31 DATFLEDLKDHIDEFVN 47 (93)
Q Consensus 31 ~atF~e~lKDh~~eFi~ 47 (93)
-|.|+++|++.++||.+
T Consensus 197 ~a~Fl~~lq~~le~~~~ 213 (214)
T d1q23a_ 197 VGRMLNELQQYCDEWQG 213 (214)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhccC
Confidence 46899999999999853
Done!