Query 034480
Match_columns 93
No_of_seqs 103 out of 596
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1507 Nucleosome assembly pr 100.0 3.1E-29 6.8E-34 192.1 6.4 85 9-93 155-249 (358)
2 PTZ00008 (NAP-S) nucleosome as 100.0 1.2E-28 2.6E-33 176.2 6.9 84 6-90 28-114 (185)
3 PTZ00007 (NAP-L) nucleosome as 99.9 1.6E-27 3.5E-32 183.0 7.5 83 11-93 96-183 (337)
4 PF00956 NAP: Nucleosome assem 99.9 4.3E-27 9.4E-32 172.7 7.7 75 11-85 66-141 (244)
5 KOG1508 DNA replication factor 99.6 3.4E-16 7.5E-21 116.9 -1.0 86 6-91 72-158 (260)
6 PF06784 UPF0240: Uncharacteri 50.8 13 0.00028 26.5 2.1 33 19-51 41-73 (179)
7 PF00284 Cytochrom_B559a: Lume 44.1 12 0.00027 20.7 0.8 10 64-73 10-19 (40)
8 PRK13611 photosystem II reacti 41.6 1E+02 0.0022 20.4 5.6 43 43-87 14-57 (104)
9 COG3123 Uncharacterized protei 37.8 29 0.00062 22.4 1.9 24 63-86 2-25 (94)
10 PF08770 SoxZ: Sulphur oxidati 31.1 11 0.00024 24.3 -0.8 48 22-70 20-71 (100)
11 PF11155 DUF2935: Domain of un 31.0 28 0.00061 22.7 1.1 26 16-41 10-36 (124)
12 TIGR00049 Iron-sulfur cluster 30.4 71 0.0015 19.9 3.0 19 37-55 64-82 (105)
13 PRK10579 hypothetical protein; 30.2 48 0.001 21.5 2.1 22 63-84 2-23 (94)
14 PF08109 Antimicrobial14: Lact 28.0 33 0.00072 17.5 0.8 15 8-22 3-17 (31)
15 PF08476 VD10_N: Viral D10 N-t 27.3 38 0.00082 19.2 1.1 18 70-87 15-32 (45)
16 PF06322 Phage_NinH: Phage Nin 26.9 33 0.00073 20.8 0.9 42 9-50 3-44 (64)
17 KOG3891 Secretory vesicle-asso 22.9 41 0.00088 27.1 0.9 35 13-47 233-270 (436)
18 KOG4539 Uncharacterized conser 21.6 44 0.00096 25.3 0.8 17 10-26 169-187 (274)
19 PF15325 MRI: Modulator of ret 20.8 24 0.00052 23.3 -0.6 14 34-47 91-104 (106)
20 KOG0804 Cytoplasmic Zn-finger 20.7 1.1E+02 0.0023 25.4 2.9 30 38-67 97-126 (493)
No 1
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.1e-29 Score=192.09 Aligned_cols=85 Identities=46% Similarity=0.796 Sum_probs=77.5
Q ss_pred cccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCC-CceEEEEEeCCCCCCcCcEEEEEEEec---CCC
Q 034480 9 TKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS-EGFKLEFTFGPNPYFKNSVLEKTYRMI---DET 84 (93)
Q Consensus 9 ~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~-~~f~l~F~F~~N~yF~N~~L~K~~~~~---~~~ 84 (93)
+..+|||+||++||+|+++++++|+++|++||+||+||++.+.+++ .+|+|.|+|++||||+|++|||+|+++ +..
T Consensus 155 ~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~ 234 (358)
T KOG1507|consen 155 EDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDED 234 (358)
T ss_pred ccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCc
Confidence 4679999999999999999999999999999999999999999888 499999999999999999999999999 566
Q ss_pred Ce------eeecccC
Q 034480 85 DI------VLEEAIG 93 (93)
Q Consensus 85 ~~------~~~~~~~ 93 (93)
+| .+..++|
T Consensus 235 ~P~~~~G~~i~~~~G 249 (358)
T KOG1507|consen 235 DPFAFDGPEIEKCEG 249 (358)
T ss_pred CCcccCCceEEeeec
Confidence 67 4555555
No 2
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=99.95 E-value=1.2e-28 Score=176.15 Aligned_cols=84 Identities=20% Similarity=0.389 Sum_probs=74.7
Q ss_pred ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEE-cCCCCceEEEEEeCC--CCCCcCcEEEEEEEecC
Q 034480 6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCR-INDSEGFKLEFTFGP--NPYFKNSVLEKTYRMID 82 (93)
Q Consensus 6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~-~~d~~~f~l~F~F~~--N~yF~N~~L~K~~~~~~ 82 (93)
.++++|+|||+||++||+||+.++ +|+++|+++|+||+||+|+. .+++++|+|+|+|++ ||||+|++|+|+|++++
T Consensus 28 kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~ 106 (185)
T PTZ00008 28 KRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKN 106 (185)
T ss_pred HHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEec
Confidence 367889999999999999999999 99999999999999999997 455679999999975 89999999999999987
Q ss_pred CCCeeeec
Q 034480 83 ETDIVLEE 90 (93)
Q Consensus 83 ~~~~~~~~ 90 (93)
+++.+..+
T Consensus 107 ~~~~~~~~ 114 (185)
T PTZ00008 107 NQEKVVEV 114 (185)
T ss_pred CCCceeee
Confidence 76654443
No 3
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=99.94 E-value=1.6e-27 Score=183.02 Aligned_cols=83 Identities=41% Similarity=0.769 Sum_probs=72.6
Q ss_pred cCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCC--CceEEEEEeCCCCCCcCcEEEEEEEecC---CCC
Q 034480 11 EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS--EGFKLEFTFGPNPYFKNSVLEKTYRMID---ETD 85 (93)
Q Consensus 11 i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~--~~f~l~F~F~~N~yF~N~~L~K~~~~~~---~~~ 85 (93)
.++||+||++||+||+.++++|+++|+++|+||+||+|++..+. ++|+|+|+|++||||+|++|+|+|++.. .++
T Consensus 96 ~~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~ 175 (337)
T PTZ00007 96 TPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDE 175 (337)
T ss_pred cCCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCC
Confidence 35899999999999999999999999999999999999987653 6999999999999999999999999964 234
Q ss_pred eeeecccC
Q 034480 86 IVLEEAIG 93 (93)
Q Consensus 86 ~~~~~~~~ 93 (93)
|.+.+++|
T Consensus 176 p~~~~~~~ 183 (337)
T PTZ00007 176 PLLSNTVA 183 (337)
T ss_pred ceeeccee
Confidence 66555443
No 4
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=99.94 E-value=4.3e-27 Score=172.65 Aligned_cols=75 Identities=45% Similarity=0.833 Sum_probs=71.4
Q ss_pred cCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCC-CCceEEEEEeCCCCCCcCcEEEEEEEecCCCC
Q 034480 11 EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTFGPNPYFKNSVLEKTYRMIDETD 85 (93)
Q Consensus 11 i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d-~~~f~l~F~F~~N~yF~N~~L~K~~~~~~~~~ 85 (93)
.+|||+||++||+||+.++.+|++.|.++|+||+||+|++..+ +++|+|+|+|++||||+|++|+|+|+++..++
T Consensus 66 ~~gIP~FW~~vl~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~ 141 (244)
T PF00956_consen 66 PKGIPGFWLTVLKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGD 141 (244)
T ss_dssp STTSTTHHHHHHHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSS
T ss_pred ccCCCCccccccccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCC
Confidence 6779999999999999999999999999999999999999877 56999999999999999999999999998765
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=99.55 E-value=3.4e-16 Score=116.91 Aligned_cols=86 Identities=28% Similarity=0.556 Sum_probs=78.7
Q ss_pred ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCCC-ceEEEEEeCCCCCCcCcEEEEEEEecCCC
Q 034480 6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET 84 (93)
Q Consensus 6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~f~l~F~F~~N~yF~N~~L~K~~~~~~~~ 84 (93)
..+.+++.||+||.+++.+||.+++++.+.|.+++.||.++.|+.+.+.. ++++.|+|.+|+||+|.+++|+|.++..+
T Consensus 72 ~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~ 151 (260)
T KOG1508|consen 72 KRRELIKEIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESG 151 (260)
T ss_pred hhhHHHhhcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeeccc
Confidence 35678999999999999999999999999999999999999999988776 99999999999999999999999999888
Q ss_pred Ceeeecc
Q 034480 85 DIVLEEA 91 (93)
Q Consensus 85 ~~~~~~~ 91 (93)
.+...++
T Consensus 152 ~~~s~~t 158 (260)
T KOG1508|consen 152 KPSSEST 158 (260)
T ss_pred Ccccccc
Confidence 7654443
No 6
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=50.77 E-value=13 Score=26.51 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHhcChhhhhhhhhcchhhhccccceEEEEc
Q 034480 19 FIAMESHHELRQNIVRHDQGALKYLTDIKWCRI 51 (93)
Q Consensus 19 ~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~ 51 (93)
..++..+|.+.+-+...|..++..|+++.|+..
T Consensus 41 ~~~~~~~pe~~eei~~Kd~~L~s~LK~VyV~S~ 73 (179)
T PF06784_consen 41 EEVLEDDPEIKEEISRKDDKLLSRLKDVYVTSK 73 (179)
T ss_pred HHHhhhChHHHHHHHhhhHHHHHhhceeEeecC
Confidence 457888999999999999999999999999864
No 7
>PF00284 Cytochrom_B559a: Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit family.; InterPro: IPR013082 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The alpha subunit (PsbE) of cytochrome b559, forms a haem-binding heterodimer with the beta subunit (PsbF) (IPR006241 from INTERPRO) within the reaction centre core of PSII. Both PsbE and PsbF are essential components for PSII assembly, and are probably involved in secondary electron transport mechanisms that help to protect PSII from photo-damage []. This domain occurs in the lumenal region of the alpha subunit. It is usually found in conjuction with an N-terminal domain (IPR013081 from INTERPRO).; GO: 0046872 metal ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 1W5C_K 1S5L_e 3BZ2_E 3PRQ_E 2AXT_E 4FBY_R 3PRR_E 3BZ1_E 3KZI_E 3A0H_E ....
Probab=44.11 E-value=12 Score=20.67 Aligned_cols=10 Identities=50% Similarity=0.863 Sum_probs=6.1
Q ss_pred CCCCCCcCcE
Q 034480 64 GPNPYFKNSV 73 (93)
Q Consensus 64 ~~N~yF~N~~ 73 (93)
.||+||++..
T Consensus 10 RPneYft~~r 19 (40)
T PF00284_consen 10 RPNEYFTESR 19 (40)
T ss_dssp -TTCSS-SS-
T ss_pred Cccccccccc
Confidence 4899999864
No 8
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=41.59 E-value=1e+02 Score=20.37 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=33.2
Q ss_pred ccceEEEEcCCCCceEEEEEeC-CCCCCcCcEEEEEEEecCCCCee
Q 034480 43 LTDIKWCRINDSEGFKLEFTFG-PNPYFKNSVLEKTYRMIDETDIV 87 (93)
Q Consensus 43 L~dI~ve~~~d~~~f~l~F~F~-~N~yF~N~~L~K~~~~~~~~~~~ 87 (93)
+.+|++.+..|...=+.+|.|. |+. ....++-=|-++++|+-+
T Consensus 14 ~p~VrLtRsrdg~~g~a~f~F~~~~~--~~~~itgm~liDeEGei~ 57 (104)
T PRK13611 14 PTQVRLLKSKTGKRGSAIFRFEDLKS--DTQNILGMRMIDEEGELT 57 (104)
T ss_pred CCceEEEEccCCCccEEEEEEcCCcc--cccceeeEEEEccCCcEE
Confidence 7899999988877668899996 566 347788877777788743
No 9
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.83 E-value=29 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=19.5
Q ss_pred eCCCCCCcCcEEEEEEEecCCCCe
Q 034480 63 FGPNPYFKNSVLEKTYRMIDETDI 86 (93)
Q Consensus 63 F~~N~yF~N~~L~K~~~~~~~~~~ 86 (93)
++.|.||.-++-.--|...+.|..
T Consensus 2 ~k~NeYFdGkvkSigF~~~s~g~a 25 (94)
T COG3123 2 LKSNEYFDGKVKSIGFSSSSTGRA 25 (94)
T ss_pred cccceeecceEEEEEeccCCCCce
Confidence 578999999998888888766643
No 10
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=31.13 E-value=11 Score=24.33 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=20.0
Q ss_pred HhcChhhhhhhhhcchhh--hccccceEEEEcCCCCceEEEEEe--CCCCCCc
Q 034480 22 MESHHELRQNIVRHDQGA--LKYLTDIKWCRINDSEGFKLEFTF--GPNPYFK 70 (93)
Q Consensus 22 l~n~~~l~~~i~~~D~~i--L~~L~dI~ve~~~d~~~f~l~F~F--~~N~yF~ 70 (93)
|-.||+-.-+-.+.+... -.|++.+.|.+.+. .-+.+.+.. .+||||+
T Consensus 20 li~HPMetGl~~d~tg~~iPa~~I~~v~v~~ng~-~v~~~~~~~siS~NP~l~ 71 (100)
T PF08770_consen 20 LISHPMETGLRKDQTGKYIPAHFIEEVEVTYNGK-PVFRADWGPSISENPYLR 71 (100)
T ss_dssp EE----B-S-BB-TTS-BB--B-EEEEEEEETTE-EEEEEEE-TTB-SS-EEE
T ss_pred EEECCCccccccCCCCCCCChHheEEEEEEECCE-EEEEEEeCCcccCCCcEE
Confidence 445665443332222222 28899999987532 234444444 4799885
No 11
>PF11155 DUF2935: Domain of unknown function (DUF2935); InterPro: IPR021328 This family of proteins with unknown function appears to be restricted to Firmicutes. ; PDB: 3D19_B 3DBY_P.
Probab=30.96 E-value=28 Score=22.71 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=18.2
Q ss_pred chHHHHHhcChh-hhhhhhhcchhhhc
Q 034480 16 DFWFIAMESHHE-LRQNIVRHDQGALK 41 (93)
Q Consensus 16 ~FW~~vl~n~~~-l~~~i~~~D~~iL~ 41 (93)
.||.+.++-|.. +...+.+.+.+..+
T Consensus 10 ~FWl~im~eHa~fi~~~L~p~e~~~i~ 36 (124)
T PF11155_consen 10 LFWLRIMKEHAIFIRAGLDPKEKELIQ 36 (124)
T ss_dssp HHHHHHHHHHHHHHHHHB-TT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 499999999986 55666777766553
No 12
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=30.39 E-value=71 Score=19.88 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=13.1
Q ss_pred hhhhccccceEEEEcCCCC
Q 034480 37 QGALKYLTDIKWCRINDSE 55 (93)
Q Consensus 37 ~~iL~~L~dI~ve~~~d~~ 55 (93)
...+.+|.++.|.+.++..
T Consensus 64 ~~~~~~l~~~~IDy~~~~~ 82 (105)
T TIGR00049 64 PKSLPYLDGSEIDYVEELL 82 (105)
T ss_pred HHHHhhhCCCEEEEeecCC
Confidence 3456777888888876544
No 13
>PRK10579 hypothetical protein; Provisional
Probab=30.16 E-value=48 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.6
Q ss_pred eCCCCCCcCcEEEEEEEecCCC
Q 034480 63 FGPNPYFKNSVLEKTYRMIDET 84 (93)
Q Consensus 63 F~~N~yF~N~~L~K~~~~~~~~ 84 (93)
|+.|.||..++....+.+.+.+
T Consensus 2 ~kaNvYFdGkv~S~~~~~~dG~ 23 (94)
T PRK10579 2 LQSNEYFSGKVKSIGFDSSSTG 23 (94)
T ss_pred ccceeEECCeEEEEEEEcCCCC
Confidence 5789999999999999887643
No 14
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=28.01 E-value=33 Score=17.53 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.2
Q ss_pred ccccCCCCchHHHHH
Q 034480 8 ATKEKGVPDFWFIAM 22 (93)
Q Consensus 8 ~~~i~~Ip~FW~~vl 22 (93)
+..|++||+|-.-.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 457899999976554
No 15
>PF08476 VD10_N: Viral D10 N-terminal; InterPro: IPR013683 This domain is found on the N terminus of the viral protein D10 (VD10) and the related MutT motif proteins []. The VD10 protein is probably essential for virus replication [] and is often found to the N terminus of a NUDIX hydrolase domain. Previous studies indicated that the vaccinia virus D10 protein, which is conserved in all sequenced poxviruses, participates in the rapid turnover of host and viral mRNAs. D10 contains a motif present in the family of Nudix/MutT enzymes, a subset of which has been shown to enhance mRNA turnover in eukaryotic cells through cleavage of the 5' cap (m7GpppNm-). The D10 protein possesses an intrinsic activity that liberates m7GDP from capped RNA substrates. Furthermore, point mutations in the Nudix/MutT motif abolished decapping activity. D10 has a strong affinity for capped RNA substrates of lengths of 24-309 nt were decapped efficiently. The poxviruses represent the only virus family shown to encode a Nudix hydrolase-decapping enzyme. The activity of the decapping and capping enzymes, accelerate mRNA turnover and helps to eliminate competing host mRNAs allowing stage-specific synthesis of viral proteins [].; GO: 0016791 phosphatase activity
Probab=27.33 E-value=38 Score=19.18 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.3
Q ss_pred cCcEEEEEEEecCCCCee
Q 034480 70 KNSVLEKTYRMIDETDIV 87 (93)
Q Consensus 70 ~N~~L~K~~~~~~~~~~~ 87 (93)
.|..|.|+|.+.++-..+
T Consensus 15 ~NrkLsktyi~~Dd~QrI 32 (45)
T PF08476_consen 15 SNRKLSKTYIFSDDSQRI 32 (45)
T ss_pred hCccccCcEEEecCCeEE
Confidence 488999999998876543
No 16
>PF06322 Phage_NinH: Phage NinH protein; InterPro: IPR010454 This entry is represented by Bacteriophage 933W, NinH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.91 E-value=33 Score=20.75 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=36.3
Q ss_pred cccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEE
Q 034480 9 TKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCR 50 (93)
Q Consensus 9 ~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~ 50 (93)
+.|+.||+.--.+.-|....+..++-.-.-+.+|+.|...+.
T Consensus 3 a~I~TIPelLi~~~GnqtEvaR~l~c~R~TVrKY~~D~~a~~ 44 (64)
T PF06322_consen 3 AEITTIPELLIETYGNQTEVARRLGCNRATVRKYSRDKDAKR 44 (64)
T ss_pred ceeeehhHHHHHHhCcHHHHHHHhcccHHHHHHHhcccccce
Confidence 568899999999999988888888888888999999987764
No 17
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.90 E-value=41 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCCchHHHHHhcChhhhhhh---hhcchhhhccccceE
Q 034480 13 GVPDFWFIAMESHHELRQNI---VRHDQGALKYLTDIK 47 (93)
Q Consensus 13 ~Ip~FW~~vl~n~~~l~~~i---~~~D~~iL~~L~dI~ 47 (93)
.+-+||.++-+.-..+.+.+ .+.|..+|++|.+=.
T Consensus 233 eL~~f~~Kta~tf~ti~ea~~~y~~YdF~~Lk~L~~~~ 270 (436)
T KOG3891|consen 233 ELLEFWSKTARTFETIHEACIGYNPYDFEILKHLQDGT 270 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHhccCC
Confidence 34589988877777776555 589999999998753
No 18
>KOG4539 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.56 E-value=44 Score=25.32 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=11.7
Q ss_pred ccCCCCchH--HHHHhcCh
Q 034480 10 KEKGVPDFW--FIAMESHH 26 (93)
Q Consensus 10 ~i~~Ip~FW--~~vl~n~~ 26 (93)
.|.+||+|| +++-+|-.
T Consensus 169 LiPNiPgFyl~yRaY~n~r 187 (274)
T KOG4539|consen 169 LIPNIPGFYLLYRAYSNWR 187 (274)
T ss_pred cCCCCCcceehhhhhhhHH
Confidence 467999999 55555543
No 19
>PF15325 MRI: Modulator of retrovirus infection
Probab=20.79 E-value=24 Score=23.30 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.4
Q ss_pred hcchhhhccccceE
Q 034480 34 RHDQGALKYLTDIK 47 (93)
Q Consensus 34 ~~D~~iL~~L~dI~ 47 (93)
++|+++|+|...|-
T Consensus 91 eEdeD~lKYVREIF 104 (106)
T PF15325_consen 91 EEDEDALKYVREIF 104 (106)
T ss_pred chhhHHHHHHHHHh
Confidence 46899999998773
No 20
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.66 E-value=1.1e+02 Score=25.42 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.1
Q ss_pred hhhccccceEEEEcCCCCceEEEEEeCCCC
Q 034480 38 GALKYLTDIKWCRINDSEGFKLEFTFGPNP 67 (93)
Q Consensus 38 ~iL~~L~dI~ve~~~d~~~f~l~F~F~~N~ 67 (93)
..++.+.+|++-+.+.|..|.+-+.|+.+.
T Consensus 97 ~~~~~I~~irivRd~~pnrymvLIkFr~q~ 126 (493)
T KOG0804|consen 97 SFIKQISDIRIVRDGMPNRYMVLIKFRDQA 126 (493)
T ss_pred HHhhhhheeEEeecCCCceEEEEEEeccch
Confidence 566889999999977777999999999753
Done!