Query 034480
Match_columns 93
No_of_seqs 103 out of 596
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e50_A Protein SET; histone ch 100.0 1.5E-30 5.2E-35 189.4 7.0 86 6-91 70-156 (225)
2 2zd7_A VPS75, vacuolar protein 100.0 1.3E-28 4.3E-33 182.7 8.6 78 6-83 46-130 (264)
3 2ayu_A Nucleosome assembly pro 99.9 6.4E-28 2.2E-32 188.3 7.0 83 10-92 181-270 (417)
4 3kyp_A Pfnaps, nucleosome asse 99.9 2.7E-28 9.4E-33 173.9 0.7 84 7-91 41-127 (193)
5 3fs3_A Nucleosome assembly pro 99.9 4.2E-27 1.4E-31 180.8 6.1 80 11-90 108-194 (359)
6 3dl3_A Tellurite resistance pr 40.5 25 0.00086 22.7 3.1 26 51-76 86-111 (119)
7 3tix_B Chromo domain-containin 28.8 2.7 9.3E-05 32.2 -3.5 25 1-25 1-25 (458)
8 3dby_A Uncharacterized protein 27.3 21 0.00071 26.1 1.1 25 16-40 16-41 (269)
9 3d19_A Conserved metalloprotei 24.8 24 0.00083 25.9 1.1 25 16-40 21-46 (283)
10 3arc_E Cytochrome B559 subunit 21.2 35 0.0012 20.8 1.1 9 64-72 50-58 (83)
11 2oxg_Z SOXZ protein; immunoglo 20.8 15 0.00053 23.0 -0.6 29 41-70 46-76 (108)
No 1
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=99.96 E-value=1.5e-30 Score=189.37 Aligned_cols=86 Identities=27% Similarity=0.600 Sum_probs=72.9
Q ss_pred ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCCC-ceEEEEEeCCCCCCcCcEEEEEEEecCCC
Q 034480 6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET 84 (93)
Q Consensus 6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~f~l~F~F~~N~yF~N~~L~K~~~~~~~~ 84 (93)
.++++|++||+||++||+||+.++++|+++|+++|+||+||+|++.+++. +|+|+|+|++||||+|++|+|+|++.++|
T Consensus 70 kR~eII~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g 149 (225)
T 2e50_A 70 KRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG 149 (225)
T ss_dssp HHHHHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred HHHHHHhccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCC
Confidence 35688999999999999999999999999999999999999999987764 99999999999999999999999999999
Q ss_pred Ceeeecc
Q 034480 85 DIVLEEA 91 (93)
Q Consensus 85 ~~~~~~~ 91 (93)
+|.+.++
T Consensus 150 ~~~s~~t 156 (225)
T 2e50_A 150 DPSSKST 156 (225)
T ss_dssp --CEEEC
T ss_pred CcccCCC
Confidence 8865543
No 2
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=99.95 E-value=1.3e-28 Score=182.67 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=73.0
Q ss_pred ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEc------CCCCceEEEEEeCC-CCCCcCcEEEEEE
Q 034480 6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRI------NDSEGFKLEFTFGP-NPYFKNSVLEKTY 78 (93)
Q Consensus 6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~------~d~~~f~l~F~F~~-N~yF~N~~L~K~~ 78 (93)
-++++|++||+||++||+||++++.+|+++|+++|+||+||+|++. +++++|+|+|+|++ ||||+|++|+|+|
T Consensus 46 kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y 125 (264)
T 2zd7_A 46 KRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVF 125 (264)
T ss_dssp HHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEE
T ss_pred HHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEE
Confidence 3578899999999999999999999999999999999999999995 45679999999999 9999999999999
Q ss_pred EecCC
Q 034480 79 RMIDE 83 (93)
Q Consensus 79 ~~~~~ 83 (93)
++..+
T Consensus 126 ~~~~~ 130 (264)
T 2zd7_A 126 QIKKG 130 (264)
T ss_dssp EEECC
T ss_pred Eeccc
Confidence 99864
No 3
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=99.94 E-value=6.4e-28 Score=188.33 Aligned_cols=83 Identities=39% Similarity=0.683 Sum_probs=74.3
Q ss_pred ccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCC-CCceEEEEEe--CCCCCCcCcEEEEEEEecCC---
Q 034480 10 KEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTF--GPNPYFKNSVLEKTYRMIDE--- 83 (93)
Q Consensus 10 ~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d-~~~f~l~F~F--~~N~yF~N~~L~K~~~~~~~--- 83 (93)
.+++||+||++||+||+.++.+|+++|++||+||+||+|++..+ +.+|+|+|+| ++||||+|++|||+|++..+
T Consensus 181 ~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~ 260 (417)
T 2ayu_A 181 QVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGY 260 (417)
T ss_dssp CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCS
T ss_pred cccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCC
Confidence 46899999999999999999999999999999999999999876 5699999999 99999999999999999854
Q ss_pred -CCeeeeccc
Q 034480 84 -TDIVLEEAI 92 (93)
Q Consensus 84 -~~~~~~~~~ 92 (93)
|++++++++
T Consensus 261 ~g~~~~~~~e 270 (417)
T 2ayu_A 261 SGDFIYDHAE 270 (417)
T ss_dssp SSSCEEEEEE
T ss_pred CCCccccccc
Confidence 455555443
No 4
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=99.94 E-value=2.7e-28 Score=173.90 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=72.0
Q ss_pred cccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCC-CCceEEEEEeCC--CCCCcCcEEEEEEEecCC
Q 034480 7 KATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTFGP--NPYFKNSVLEKTYRMIDE 83 (93)
Q Consensus 7 ~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d-~~~f~l~F~F~~--N~yF~N~~L~K~~~~~~~ 83 (93)
++++|++||+||++||+||++++.++ ++|+++|+||+||+|++..+ +.+|+|+|+|++ ||||+|++|+|+|++..+
T Consensus 41 R~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~ 119 (193)
T 3kyp_A 41 RDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNN 119 (193)
T ss_dssp HHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC--
T ss_pred HHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCC
Confidence 56789999999999999999999865 79999999999999998755 459999999998 899999999999999988
Q ss_pred CCeeeecc
Q 034480 84 TDIVLEEA 91 (93)
Q Consensus 84 ~~~~~~~~ 91 (93)
|+++++++
T Consensus 120 g~~~~~~t 127 (193)
T 3kyp_A 120 QEKVVECT 127 (193)
T ss_dssp --CCCCCC
T ss_pred CCeeeccc
Confidence 88776554
No 5
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=99.93 E-value=4.2e-27 Score=180.80 Aligned_cols=80 Identities=40% Similarity=0.710 Sum_probs=67.2
Q ss_pred cCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcC----CCCceEEEEEeCCCCCCcCcEEEEEEEecC---C
Q 034480 11 EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIN----DSEGFKLEFTFGPNPYFKNSVLEKTYRMID---E 83 (93)
Q Consensus 11 i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~----d~~~f~l~F~F~~N~yF~N~~L~K~~~~~~---~ 83 (93)
.++||+||++||+||++++.+|+++|+++|+||+||+|++.+ ++++|+|+|+|++||||+|++|+|+|+++. +
T Consensus 108 ~kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~ 187 (359)
T 3fs3_A 108 TPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCD 187 (359)
T ss_dssp STTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC-----
T ss_pred cCCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCC
Confidence 459999999999999999999999999999999999999853 456999999999999999999999999985 3
Q ss_pred CCeeeec
Q 034480 84 TDIVLEE 90 (93)
Q Consensus 84 ~~~~~~~ 90 (93)
++|++.+
T Consensus 188 ~dp~~~~ 194 (359)
T 3fs3_A 188 NEPVLLH 194 (359)
T ss_dssp ---CEEE
T ss_pred CCccccc
Confidence 4676543
No 6
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=40.49 E-value=25 Score=22.69 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=12.9
Q ss_pred cCCCCceEEEEEeCCCCCCcCcEEEE
Q 034480 51 INDSEGFKLEFTFGPNPYFKNSVLEK 76 (93)
Q Consensus 51 ~~d~~~f~l~F~F~~N~yF~N~~L~K 76 (93)
..|+..|.|.|+=.+-.||.++.-+|
T Consensus 86 ~sdD~~f~leFyc~~~dyf~k~~~~~ 111 (119)
T 3dl3_A 86 LSDDAQFNINFWSDQDKSGKKMFNTK 111 (119)
T ss_dssp ECTTCEEEEEEEECC-----------
T ss_pred ECCCeEEEEEEEECchHHhhhhhccc
Confidence 56677899999999999999866554
No 7
>3tix_B Chromo domain-containing protein 1; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Schizosaccharomyces pombe}
Probab=28.78 E-value=2.7 Score=32.16 Aligned_cols=25 Identities=8% Similarity=0.333 Sum_probs=10.5
Q ss_pred CccccccccccCCCCchHHHHHhcC
Q 034480 1 MVQSEDKATKEKGVPDFWFIAMESH 25 (93)
Q Consensus 1 ~~~~~~~~~~i~~Ip~FW~~vl~n~ 25 (93)
|.|++........||+||.-||+..
T Consensus 1 ~~SE~~~~~ssS~i~DY~RFVLR~G 25 (458)
T 3tix_B 1 MISESEDLSSASTLSDYFRFVLRVG 25 (458)
T ss_dssp ------------CCCCEEEEEEEET
T ss_pred CcccccCCcccccchHHHHHHhhcC
Confidence 4566666667778999998887643
No 8
>3dby_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Probab=27.33 E-value=21 Score=26.13 Aligned_cols=25 Identities=12% Similarity=0.549 Sum_probs=19.0
Q ss_pred chHHHHHhcChhh-hhhhhhcchhhh
Q 034480 16 DFWFIAMESHHEL-RQNIVRHDQGAL 40 (93)
Q Consensus 16 ~FW~~vl~n~~~l-~~~i~~~D~~iL 40 (93)
-||.++|+-|..+ ...+.+.|.+..
T Consensus 16 ~FWlrIMkEHA~Fi~~~L~p~e~~li 41 (269)
T 3dby_A 16 QFWLKVLTDHAQFLLDALAPKEKEDI 41 (269)
T ss_dssp HHHHHHHHHHHHHHHHHBCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 5999999999974 455677776544
No 9
>3d19_A Conserved metalloprotein; structural genomics, unknown function, PSI-2, protein struct initiative, nysgxrc; 2.30A {Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Probab=24.80 E-value=24 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=18.5
Q ss_pred chHHHHHhcChhh-hhhhhhcchhhh
Q 034480 16 DFWFIAMESHHEL-RQNIVRHDQGAL 40 (93)
Q Consensus 16 ~FW~~vl~n~~~l-~~~i~~~D~~iL 40 (93)
-||.++|+-|..+ ...+++.+.+..
T Consensus 21 ~FW~rIMkEHa~Fi~~~L~p~e~~lI 46 (283)
T 3d19_A 21 RFWSRIMKEHSFFLRLGFRCEDTQLI 46 (283)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4999999999874 566666666543
No 10
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=21.16 E-value=35 Score=20.75 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=7.2
Q ss_pred CCCCCCcCc
Q 034480 64 GPNPYFKNS 72 (93)
Q Consensus 64 ~~N~yF~N~ 72 (93)
.||+||++.
T Consensus 50 rpneYft~~ 58 (83)
T 3arc_E 50 RPDSYYAQE 58 (83)
T ss_dssp CTTSSSCTT
T ss_pred Ccccccccc
Confidence 489999874
No 11
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=20.75 E-value=15 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=16.3
Q ss_pred ccccceEEEEcCCCCceEEEEEe--CCCCCCc
Q 034480 41 KYLTDIKWCRINDSEGFKLEFTF--GPNPYFK 70 (93)
Q Consensus 41 ~~L~dI~ve~~~d~~~f~l~F~F--~~N~yF~ 70 (93)
.|++.|+|...+ ..-+++.+.- .+||||+
T Consensus 46 ~~I~~v~~~~ng-~~v~~~~~~~~iS~NP~~~ 76 (108)
T 2oxg_Z 46 SIINRFTCELNG-VNVVDVAIDPAVSTNPYFE 76 (108)
T ss_dssp BCEEEEEEEETT-EEEEEEEECTTBCSSCEEE
T ss_pred HheEEEEEEECC-EEEEEEEeCCccccCCeEE
Confidence 788899887543 2223333332 2477775
Done!