BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034483
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
          Length = 101

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 7  TWCVAKPSSDQAALLANINYACSQ-IDCRILQKGYPCFYPDNLMNHASISMNLYYQAKGR 65
          +WCV KP      L  NINYACSQ IDC  +Q G  CF P+ +  HA+  MNLYYQ  GR
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGR 71

Query: 66 NRWNCDFRNSALIVTTDPSYSKCVY 90
          N WNCDF  +A +  T+PSY  C +
Sbjct: 72 NSWNCDFSQTATLTNTNPSYGACNF 96


>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
          With An Edc3-Fdf Peptide
 pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
          With An Edc3-Fdf Peptide
 pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
          With An Edc3-Fdf Peptide
 pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
          With An Edc3-Fdf Peptide
          Length = 193

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 15/75 (20%)

Query: 5  QKTWCV----AKPSSDQAALLANINYACSQIDCRILQKGYPCFYPDNLMNHASISMNLYY 60
          QK  C+    ++   +Q+ +  N +     +  +I Q GY CFY      HA +      
Sbjct: 30 QKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYI-----HAKM------ 78

Query: 61 QAKGRNRWNCDFRNS 75
          + + RNR   DFRN 
Sbjct: 79 RQEHRNRVFHDFRNG 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,877,959
Number of Sequences: 62578
Number of extensions: 97263
Number of successful extensions: 173
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 2
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)