Query 034483
Match_columns 93
No_of_seqs 130 out of 714
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 7.7E-38 1.7E-42 200.0 8.5 84 7-90 1-85 (85)
2 PF07983 X8: X8 domain; Inter 100.0 3.3E-29 7.2E-34 158.1 6.8 71 7-77 1-78 (78)
3 PF09628 YvfG: YvfG protein; 35.4 25 0.00053 21.4 1.3 9 54-62 27-35 (68)
4 KOG3679 Predicted coiled-coil 23.1 51 0.0011 27.3 1.5 26 52-77 531-556 (802)
5 COG0066 LeuD 3-isopropylmalate 18.3 90 0.0019 22.8 1.8 17 43-59 72-88 (191)
6 PF04255 DUF433: Protein of un 15.6 1.5E+02 0.0032 16.8 2.0 15 13-27 42-56 (56)
7 PF01589 Alpha_E1_glycop: Alph 11.6 1.4E+02 0.003 24.9 1.4 22 71-92 375-396 (502)
8 KOG0044 Ca2+ sensor (EF-Hand s 10.6 87 0.0019 22.7 -0.0 15 45-59 95-109 (193)
9 PF15606 Toxin_55: Putative to 10.5 2E+02 0.0043 18.1 1.6 24 49-72 21-44 (77)
10 COG3779 Uncharacterized protei 9.8 1.3E+02 0.0029 21.0 0.7 28 2-40 98-125 (151)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=100.00 E-value=7.7e-38 Score=200.04 Aligned_cols=84 Identities=48% Similarity=0.935 Sum_probs=82.3
Q ss_pred cceEeCCCCCHHHHHHHHHhhcCc-cccccccCCCCCCCCCChhhhHhHHHHHHHHHhCCCCCCCCCCCceEEEecCCCC
Q 034483 7 TWCVAKPSSDQAALLANINYACSQ-IDCRILQKGYPCFYPDNLMNHASISMNLYYQAKGRNRWNCDFRNSALIVTTDPSY 85 (93)
Q Consensus 7 ~wCV~~~~~~~~~l~~~l~~aCg~-~dC~~I~~~g~c~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~A~i~~~dps~ 85 (93)
+|||+|+++++++|+++|+|||++ +||++|++||+||+|+++++|||||||+|||++++.+++|||+|+|+|++.||+.
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 599999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred Ceeee
Q 034483 86 SKCVY 90 (93)
Q Consensus 86 ~~C~~ 90 (93)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99986
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.96 E-value=3.3e-29 Score=158.12 Aligned_cols=71 Identities=39% Similarity=0.740 Sum_probs=60.8
Q ss_pred cceEeCCCCCHHHHHHHHHhhcCc--cccccccCCCC-----CCCCCChhhhHhHHHHHHHHHhCCCCCCCCCCCceE
Q 034483 7 TWCVAKPSSDQAALLANINYACSQ--IDCRILQKGYP-----CFYPDNLMNHASISMNLYYQAKGRNRWNCDFRNSAL 77 (93)
Q Consensus 7 ~wCV~~~~~~~~~l~~~l~~aCg~--~dC~~I~~~g~-----c~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~A~ 77 (93)
+|||+++++++++|+++|+|||++ +||++|++||+ .|++|++++|||||||+|||++++.+++|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999999 89999999998 466666799999999999999999999999999996
No 3
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=35.40 E-value=25 Score=21.42 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 034483 54 ISMNLYYQA 62 (93)
Q Consensus 54 ya~N~Yyq~ 62 (93)
-|||+||..
T Consensus 27 ~AmNaYYr~ 35 (68)
T PF09628_consen 27 HAMNAYYRS 35 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 589999975
No 4
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.15 E-value=51 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.548 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHhCCCCCCCCCCCceE
Q 034483 52 ASISMNLYYQAKGRNRWNCDFRNSAL 77 (93)
Q Consensus 52 aSya~N~Yyq~~~~~~~aCdF~G~A~ 77 (93)
+-.-+..||++++-..-+|.|+|.--
T Consensus 531 lilrlqeyfekqgvkdfacsfsgsip 556 (802)
T KOG3679|consen 531 LILRLQEYFEKQGVKDFACSFSGSIP 556 (802)
T ss_pred HHHHHHHHHHHcCcceeeeeccCCcc
Confidence 44556789999999999999999753
No 5
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=18.34 E-value=90 Score=22.84 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=13.4
Q ss_pred CCCCChhhhHhHHHHHH
Q 034483 43 FYPDNLMNHASISMNLY 59 (93)
Q Consensus 43 ~~~~t~~~~aSya~N~Y 59 (93)
|.-.+.++||.||+..|
T Consensus 72 FGcGSSREHApwALk~~ 88 (191)
T COG0066 72 FGCGSSREHAPWALKDY 88 (191)
T ss_pred CCCCccHHHHHHHHHHc
Confidence 44445699999999876
No 6
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=15.61 E-value=1.5e+02 Score=16.80 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=9.0
Q ss_pred CCCCHHHHHHHHHhh
Q 034483 13 PSSDQAALLANINYA 27 (93)
Q Consensus 13 ~~~~~~~l~~~l~~a 27 (93)
|.++.+++.++|.|+
T Consensus 42 p~Lt~~~i~aAl~ya 56 (56)
T PF04255_consen 42 PSLTLEDIRAALAYA 56 (56)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC
Confidence 346677777777774
No 7
>PF01589 Alpha_E1_glycop: Alphavirus E1 glycoprotein; InterPro: IPR002548 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 (IPR000936 from INTERPRO) and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3, glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike []. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together. The alphaviral glycoprotein E1 is a class II viral fusion protein, which is structurally different from the class I fusion proteins found in influenza virus and HIV. The structure of the Semliki Forest virus revealed a structure that is similar to that of flaviviral glycoprotein E, with three structural domains in the same primary sequence arrangement []. This entry represents all three domains of the alphaviral E1 glycoprotein.; GO: 0004252 serine-type endopeptidase activity, 0019028 viral capsid, 0055036 virion membrane; PDB: 2YEW_L 1LD4_P 1Z8Y_K 3MUU_B 3N44_F 2XFB_F 3N42_F 2XFC_H 3N40_F 3N41_F ....
Probab=11.59 E-value=1.4e+02 Score=24.90 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=16.3
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+-..--.|.|..++
T Consensus 375 DfGGvati~Y~~~k~GkCaVHs 396 (502)
T PF01589_consen 375 DFGGVATITYKADKAGKCAVHS 396 (502)
T ss_dssp SSEEEEEEEEEESS-EEEEEEE
T ss_pred CCCceEEEEEecCCCccCceec
Confidence 8999999986555558887664
No 8
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=10.57 E-value=87 Score=22.68 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.9
Q ss_pred CCChhhhHhHHHHHH
Q 034483 45 PDNLMNHASISMNLY 59 (93)
Q Consensus 45 ~~t~~~~aSya~N~Y 59 (93)
..++.+++.|+|..|
T Consensus 95 rGt~eekl~w~F~ly 109 (193)
T KOG0044|consen 95 RGTLEEKLKWAFRLY 109 (193)
T ss_pred CCcHHHHhhhhheee
Confidence 347899999999998
No 9
>PF15606 Toxin_55: Putative toxin 55
Probab=10.54 E-value=2e+02 Score=18.07 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.2
Q ss_pred hhhHhHHHHHHHHHhCCCCCCCCC
Q 034483 49 MNHASISMNLYYQAKGRNRWNCDF 72 (93)
Q Consensus 49 ~~~aSya~N~Yyq~~~~~~~aCdF 72 (93)
.+...=.+|.|++.-++.+.-|+.
T Consensus 21 ~~~v~~~~~~~~~~~GK~~drCd~ 44 (77)
T PF15606_consen 21 VQQVYEIISDAFQSGGKAPDRCDV 44 (77)
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHH
Confidence 566777899999999999999974
No 10
>COG3779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=9.79 E-value=1.3e+02 Score=21.02 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=19.2
Q ss_pred CCCCccceEeCCCCCHHHHHHHHHhhcCccccccccCCC
Q 034483 2 VNGQKTWCVAKPSSDQAALLANINYACSQIDCRILQKGY 40 (93)
Q Consensus 2 ~~~~~~wCV~~~~~~~~~l~~~l~~aCg~~dC~~I~~~g 40 (93)
|.-++.|||.++++++=. | .|.+|..||
T Consensus 98 Ve~Gqsv~v~~dDISDWm------y-----~~gg~~yGg 125 (151)
T COG3779 98 VEQGQSVCVPVDDISDWM------Y-----VCGGIPYGG 125 (151)
T ss_pred eecCcEEEEehhhhhhhh------e-----eeCCEeecC
Confidence 345788999998886543 2 456666666
Done!