Query 034483
Match_columns 93
No_of_seqs 130 out of 714
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jon_A Beta-1,3-glucanase; oli 100.0 3.3E-41 1.1E-45 221.0 10.2 90 4-93 9-99 (101)
2 2w61_A GAS2P, glycolipid-ancho 99.9 3.5E-29 1.2E-33 201.2 4.2 86 6-92 396-493 (555)
3 2v33_A E1 envelope glycoprotei 50.7 4.9 0.00017 25.2 0.8 22 71-92 20-41 (91)
4 2gsv_A Hypothetical protein YV 35.2 15 0.00053 22.0 1.3 9 54-62 28-36 (80)
5 3j0f_E E1 envelope glycoprotei 24.1 43 0.0015 26.2 2.3 22 71-92 311-332 (439)
6 3j0c_A E1 envelope glycoprotei 22.8 43 0.0015 26.2 2.1 22 71-92 311-332 (442)
7 1i9w_A Fusion protein E1; enve 19.8 59 0.002 25.0 2.3 22 71-92 311-332 (390)
8 3n40_F E1 envelope glycoprotei 19.1 57 0.002 25.1 2.1 22 71-92 313-334 (393)
9 3ox7_P MH027; urokinase-type p 17.0 50 0.0017 15.2 0.9 12 64-75 2-13 (23)
10 3muu_A Structural polyprotein; 15.8 68 0.0023 26.8 1.9 22 71-92 671-692 (750)
No 1
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Probab=100.00 E-value=3.3e-41 Score=221.01 Aligned_cols=90 Identities=49% Similarity=0.975 Sum_probs=86.8
Q ss_pred CCccceEeCCCCCHHHHHHHHHhhcCc-cccccccCCCCCCCCCChhhhHhHHHHHHHHHhCCCCCCCCCCCceEEEecC
Q 034483 4 GQKTWCVAKPSSDQAALLANINYACSQ-IDCRILQKGYPCFYPDNLMNHASISMNLYYQAKGRNRWNCDFRNSALIVTTD 82 (93)
Q Consensus 4 ~~~~wCV~~~~~~~~~l~~~l~~aCg~-~dC~~I~~~g~c~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~A~i~~~d 82 (93)
..++|||+|+++++++|+++|+|||++ +||++|++||+||.|+++++|||||||+|||++++..++|||+|+|+|+++|
T Consensus 9 ~~~~wCVak~~~~~~~l~~~ldyACg~gaDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~~d 88 (101)
T 2jon_A 9 AAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNTN 88 (101)
T ss_dssp CCSCEEEECTTSCHHHHHHHHHHHTTTSSSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEESSC
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHcCCCCCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEeecC
Confidence 467899999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeecC
Q 034483 83 PSYSKCVYSYL 93 (93)
Q Consensus 83 ps~~~C~~~~~ 93 (93)
||.++|+|+++
T Consensus 89 PS~g~C~f~~~ 99 (101)
T 2jon_A 89 PSYGACNFPSG 99 (101)
T ss_dssp CCCSSSCCCCS
T ss_pred CCCCceecCCC
Confidence 99999999863
No 2
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*
Probab=99.95 E-value=3.5e-29 Score=201.23 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=82.3
Q ss_pred ccceEeCCC-CCHHHHHHHHHhhcCccccccccCCCC-----CCCCCChhhhHhHHHHHHHHHhCCCCCCCCCCCc----
Q 034483 6 KTWCVAKPS-SDQAALLANINYACSQIDCRILQKGYP-----CFYPDNLMNHASISMNLYYQAKGRNRWNCDFRNS---- 75 (93)
Q Consensus 6 ~~wCV~~~~-~~~~~l~~~l~~aCg~~dC~~I~~~g~-----c~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~---- 75 (93)
++|||++++ +++++|+++|+||||++||++|++||+ ||+||++++|||||||+|||++++..++|||+|+
T Consensus 396 ~~~Cv~~~~~~~~~~l~~~~~yaC~~~dC~~I~~~g~~g~yG~~~~~~~~~~~Sya~n~yyq~~~~~~~~C~F~g~~~~~ 475 (555)
T 2w61_A 396 ILPCEIVPFGAESGKYEEYFSYLCSKVDCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLYCKIGANDRHCPLNDKNVYF 475 (555)
T ss_dssp HCSEEECCTTCCGGGHHHHHHHHTTTSCGGGGCEETTTTEECTTTTSCHHHHHHHHHHHHHHHHCCCSSCCSCCCTTEEE
T ss_pred CCeeecCCCCCCHHHHHHHHHHHhCcCCCccccCCCcCCCccccCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccc
Confidence 589999999 999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred --eEEEecCCCCCeeeeec
Q 034483 76 --ALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 76 --A~i~~~dps~~~C~~~~ 92 (93)
|+++ ++||.++|+|++
T Consensus 476 ~~a~~~-~~~s~~~C~~~~ 493 (555)
T 2w61_A 476 NLESLQ-PLTSESICKNVF 493 (555)
T ss_dssp CGGGGS-CCCTTCTTHHHH
T ss_pred cceEEE-eCCCCCchHhHH
Confidence 9999 788999999864
No 3
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=50.74 E-value=4.9 Score=25.17 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=17.2
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+-...-.|.|..++
T Consensus 20 DFGGvatl~Y~a~k~GkCaVHs 41 (91)
T 2v33_A 20 DFGGVLTLTYKTNKNGDCSVHS 41 (91)
T ss_dssp EEEEEEEEEEEESSCEEEEEEC
T ss_pred CCCCeEEEEEecCCCccceeec
Confidence 8999999986655558887664
No 4
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=35.24 E-value=15 Score=21.95 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 034483 54 ISMNLYYQA 62 (93)
Q Consensus 54 ya~N~Yyq~ 62 (93)
-|||+||..
T Consensus 28 hAmNaYYrs 36 (80)
T 2gsv_A 28 HAMNSYYRS 36 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999985
No 5
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=24.11 E-value=43 Score=26.15 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=17.6
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+....-.|.|..++
T Consensus 311 DfGGvatl~Y~~~k~GkCaVHs 332 (439)
T 3j0f_E 311 DFGGMATLQYVSDREGQCPVHS 332 (439)
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999987665568887764
No 6
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=22.84 E-value=43 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.7
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+....-.|.|..++
T Consensus 311 DfGGvatl~Y~~~k~GkCaVHs 332 (442)
T 3j0c_A 311 DFGGIATVKYSASKSGKCAVHV 332 (442)
T ss_dssp SCCEEEEEEEEESSCEEEEEEC
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999986655558898765
No 7
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=19.82 E-value=59 Score=24.99 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=17.0
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+-...-.|.|..++
T Consensus 311 DfGGvat~~Y~~~k~GkCaVHs 332 (390)
T 1i9w_A 311 DFGGVLTLTYKTNKNGDCSVHS 332 (390)
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999986655558887654
No 8
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=19.06 E-value=57 Score=25.07 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.3
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+-...-.|.|..++
T Consensus 313 DfGGvat~~Y~~~k~GkCaVHs 334 (393)
T 3n40_F 313 DFGGVAIIKYAASKKGKCAVHS 334 (393)
T ss_dssp SCCEEEEEEEEESSCEEEEEEE
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999986655558887664
No 9
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=16.99 E-value=50 Score=15.16 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCc
Q 034483 64 GRNRWNCDFRNS 75 (93)
Q Consensus 64 ~~~~~aCdF~G~ 75 (93)
+....+|.+.|+
T Consensus 2 gsadgacswrgl 13 (23)
T 3ox7_P 2 GSADGACSWRGL 13 (26)
T ss_pred CccCcccccccc
Confidence 456778888875
No 10
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein; HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A 3muw_U 1z8y_A 1z8y_B
Probab=15.84 E-value=68 Score=26.75 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=15.5
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+...--.|.|..++
T Consensus 671 DfGG~atl~y~~~k~GkCavHs 692 (750)
T 3muu_A 671 DFGGMATLQYVSDREGQCPVHS 692 (750)
T ss_dssp SSCEEEEEEEEESSCCCEECEE
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 7888888875544447787654
Done!