Query 034483
Match_columns 93
No_of_seqs 130 out of 714
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 04:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034483.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034483hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v33a1 b.1.18.4 (A:293-382) F 52.0 2.1 0.00016 25.3 0.8 22 71-92 19-40 (90)
2 d2gsva1 a.23.7.1 (A:3-69) Hypo 39.7 5.7 0.00041 21.8 1.3 9 54-62 26-34 (67)
3 d2dlka1 g.37.1.1 (A:8-37) Zinc 29.0 9.1 0.00066 17.7 0.8 12 69-80 2-13 (30)
4 d1ijda_ f.3.1.1 (A:) Light-har 20.3 3.4 0.00025 21.4 -2.0 17 3-19 2-18 (46)
5 d1nkza_ f.3.1.1 (A:) Light-har 18.3 4.6 0.00033 21.5 -1.8 17 3-19 2-18 (53)
6 d1cc5a_ a.3.1.1 (A:) Cytochrom 13.0 64 0.0047 16.8 2.3 15 13-27 66-80 (83)
7 d1kx7a_ a.3.1.1 (A:) Mono-heme 11.9 73 0.0053 16.5 2.3 15 13-27 63-77 (81)
8 d2j7ja3 g.37.1.1 (A:58-85) Tra 11.8 31 0.0022 15.6 0.5 11 65-75 5-15 (28)
9 d1iq0a1 a.27.1.1 (A:467-592) A 10.2 53 0.0039 19.0 1.4 24 49-72 66-89 (126)
10 d1i26a_ g.3.6.3 (A:) PTU-1 {As 9.5 71 0.0051 14.7 1.4 11 36-46 6-16 (34)
No 1
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=52.04 E-value=2.1 Score=25.28 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=17.1
Q ss_pred CCCCceEEEecCCCCCeeeeec
Q 034483 71 DFRNSALIVTTDPSYSKCVYSY 92 (93)
Q Consensus 71 dF~G~A~i~~~dps~~~C~~~~ 92 (93)
||+|.|+|+-...-.|.|..++
T Consensus 19 DfGGvatl~Y~a~k~GkCaVHs 40 (90)
T d2v33a1 19 DFGGVLTLTYKTNKNGDCSVHS 40 (90)
T ss_dssp EEEEEEEEEEEESSCEEEEEEC
T ss_pred CcCCeEEEEEecCCCccceeEc
Confidence 8999999986655558887664
No 2
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=39.72 E-value=5.7 Score=21.84 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 034483 54 ISMNLYYQA 62 (93)
Q Consensus 54 ya~N~Yyq~ 62 (93)
-|||+||..
T Consensus 26 hAmNaYYrs 34 (67)
T d2gsva1 26 HAMNSYYRS 34 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999985
No 3
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.98 E-value=9.1 Score=17.71 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.4
Q ss_pred CCCCCCceEEEe
Q 034483 69 NCDFRNSALIVT 80 (93)
Q Consensus 69 aCdF~G~A~i~~ 80 (93)
.|||.|-+.|-+
T Consensus 2 ~cdf~gc~kifs 13 (30)
T d2dlka1 2 PCDFPGCGRIFS 13 (30)
T ss_dssp ECSSTTTCCEES
T ss_pred CCCCCCchhhhc
Confidence 499999887754
No 4
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=20.27 E-value=3.4 Score=21.44 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=12.4
Q ss_pred CCCccceEeCCCCCHHH
Q 034483 3 NGQKTWCVAKPSSDQAA 19 (93)
Q Consensus 3 ~~~~~wCV~~~~~~~~~ 19 (93)
..++.|+|+||.+-..-
T Consensus 2 n~gkiW~VV~PtvG~Pl 18 (46)
T d1ijda_ 2 NQGKIWTVVPPAFGLPL 18 (46)
T ss_dssp TTGGGGGTSCHHHHHHH
T ss_pred CCceEEEEECCCcCchh
Confidence 35789999998874433
No 5
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=18.25 E-value=4.6 Score=21.49 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=12.1
Q ss_pred CCCccceEeCCCCCHHH
Q 034483 3 NGQKTWCVAKPSSDQAA 19 (93)
Q Consensus 3 ~~~~~wCV~~~~~~~~~ 19 (93)
..++.|+|+||.+-..-
T Consensus 2 nqgkiW~VV~PtVG~Pl 18 (53)
T d1nkza_ 2 NQGKIWTVVNPAIGIPA 18 (53)
T ss_dssp CCTTGGGTSCHHHHHHH
T ss_pred CCceEEEEECCCcCchh
Confidence 35789999998774433
No 6
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=13.05 E-value=64 Score=16.75 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHhh
Q 034483 13 PSSDQAALLANINYA 27 (93)
Q Consensus 13 ~~~~~~~l~~~l~~a 27 (93)
..++++++.++++|+
T Consensus 66 ~~Lsd~ei~~vv~Yi 80 (83)
T d1cc5a_ 66 ADCSDDELKAAIGKM 80 (83)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 347899999999986
No 7
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}
Probab=11.94 E-value=73 Score=16.46 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHhh
Q 034483 13 PSSDQAALLANINYA 27 (93)
Q Consensus 13 ~~~~~~~l~~~l~~a 27 (93)
...++++|.++++|+
T Consensus 63 ~~Lsd~ei~~v~~Yi 77 (81)
T d1kx7a_ 63 TDCTDEDYKAAIEFM 77 (81)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 457899999999986
No 8
>d2j7ja3 g.37.1.1 (A:58-85) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=11.82 E-value=31 Score=15.59 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=7.2
Q ss_pred CCCCCCCCCCc
Q 034483 65 RNRWNCDFRNS 75 (93)
Q Consensus 65 ~~~~aCdF~G~ 75 (93)
+..++|.|.|.
T Consensus 5 ~kd~tc~fvgk 15 (28)
T d2j7ja3 5 KKDDSCSFVGK 15 (28)
T ss_dssp CSCSSCCCEES
T ss_pred ccCCcccccch
Confidence 34567888764
No 9
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=10.20 E-value=53 Score=18.98 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=15.9
Q ss_pred hhhHhHHHHHHHHHhCCCCCCCCC
Q 034483 49 MNHASISMNLYYQAKGRNRWNCDF 72 (93)
Q Consensus 49 ~~~aSya~N~Yyq~~~~~~~aCdF 72 (93)
...++=+||+||+...-....+.+
T Consensus 66 l~~La~~F~~fY~~~~~~~~~~~i 89 (126)
T d1iq0a1 66 LLDLAASWNAYYNARENGQPATPV 89 (126)
T ss_dssp HHHHHHHHHHHHHCEETTEESSCS
T ss_pred HHHHHHHHHHHHHhcccccccccc
Confidence 345777899999876544444443
No 10
>d1i26a_ g.3.6.3 (A:) PTU-1 {Assassin bug (Peirates turpis) [TaxId: 181095]}
Probab=9.53 E-value=71 Score=14.69 Aligned_cols=11 Identities=45% Similarity=1.008 Sum_probs=8.3
Q ss_pred ccCCCCCCCCC
Q 034483 36 LQKGYPCFYPD 46 (93)
Q Consensus 36 I~~~g~c~~~~ 46 (93)
|.+|..||..+
T Consensus 6 iapgapcfgtd 16 (34)
T d1i26a_ 6 IAPGAPCFGTD 16 (34)
T ss_dssp BCTTSCCTTTT
T ss_pred cCCCCCccCCC
Confidence 77888887654
Done!