BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034485
         (93 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20
          PE=1 SV=1
          Length = 242

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 16 LKSTLTKPTLKPNPLPSLLSTRSSPTFSRSVHQLGCLQSLLPLHSA 61
          L+ +LT PT K  PL  +   R +  F +    + C +  +P+H A
Sbjct: 43 LRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQA 88


>sp|A7TKW4|SLA1_VANPO Actin cytoskeleton-regulatory complex protein SLA1
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=SLA1 PE=3 SV=1
          Length = 1202

 Score = 29.3 bits (64), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 4   RYRALSKSTHFLLKSTLTKPTLKPNPLPSLLSTRSSPTFSRSVHQLGCLQSLLPLHSA 61
           R R+ S ST     ST +K  L PNP  S +    S TF      +GC +  + LH A
Sbjct: 489 RSRSGSYSTRKRASSTTSKKEL-PNPKKSRIWEDRSGTFKVEAQFIGCKEGKVHLHKA 545


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.124    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,001,235
Number of Sequences: 539616
Number of extensions: 854736
Number of successful extensions: 3021
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3016
Number of HSP's gapped (non-prelim): 16
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)