Query 034485
Match_columns 93
No_of_seqs 102 out of 132
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15249 GLTSCR1: Glioma tumor 12.4 73 0.0016 21.5 0.1 10 51-60 27-36 (109)
2 PF00023 Ank: Ankyrin repeat H 11.2 1.2E+02 0.0027 15.4 0.7 11 55-65 3-13 (33)
3 PF13606 Ank_3: Ankyrin repeat 7.3 2.2E+02 0.0047 14.7 0.7 10 56-65 4-13 (30)
4 COG0523 Putative GTPases (G3E 7.1 1.9E+02 0.0041 23.3 0.5 15 78-92 55-69 (323)
5 KOG0171 Mitochondrial inner me 6.9 1.8E+02 0.004 22.2 0.4 15 71-85 132-146 (176)
6 cd02796 tRNA_bind_bactPheRS tR 6.7 1.8E+02 0.004 18.8 0.2 14 76-89 65-78 (103)
7 PF11575 FhuF_C: FhuF 2Fe-2S C 6.2 3.1E+02 0.0066 14.0 0.9 12 81-92 10-21 (22)
8 PF01588 tRNA_bind: Putative t 6.2 1.6E+02 0.0034 19.0 -0.3 14 77-90 61-74 (95)
9 PF01539 HCV_env: Hepatitis C 5.7 2E+02 0.0043 22.3 0.0 16 77-92 104-119 (190)
10 PF13857 Ank_5: Ankyrin repeat 5.6 2.9E+02 0.0064 15.7 0.7 6 57-62 19-24 (56)
No 1
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=12.42 E-value=73 Score=21.53 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=8.5
Q ss_pred hhcccchhhH
Q 034485 51 CLQSLLPLHS 60 (93)
Q Consensus 51 cv~SllPLHS 60 (93)
.++-|||||-
T Consensus 27 A~~RLLPYHv 36 (109)
T PF15249_consen 27 AVERLLPYHV 36 (109)
T ss_pred HHHHhcchhh
Confidence 6788999995
No 2
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=11.23 E-value=1.2e+02 Score=15.41 Aligned_cols=11 Identities=36% Similarity=0.437 Sum_probs=7.6
Q ss_pred cchhhHHHHHh
Q 034485 55 LLPLHSAVSSA 65 (93)
Q Consensus 55 llPLHSAvAsA 65 (93)
.-|||.|+-.-
T Consensus 3 ~TpLh~A~~~~ 13 (33)
T PF00023_consen 3 NTPLHYAAQRG 13 (33)
T ss_dssp BBHHHHHHHTT
T ss_pred ccHHHHHHHHH
Confidence 35899887653
No 3
>PF13606 Ank_3: Ankyrin repeat
Probab=7.26 E-value=2.2e+02 Score=14.69 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=7.0
Q ss_pred chhhHHHHHh
Q 034485 56 LPLHSAVSSA 65 (93)
Q Consensus 56 lPLHSAvAsA 65 (93)
-|||.|+...
T Consensus 4 T~Lh~A~~~g 13 (30)
T PF13606_consen 4 TPLHLAASNG 13 (30)
T ss_pred CHHHHHHHhC
Confidence 4889887653
No 4
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=7.07 E-value=1.9e+02 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.5
Q ss_pred ceeccccccccCCCC
Q 034485 78 SRSLSQGMLCSANPG 92 (93)
Q Consensus 78 ~~~LsqG~~~~~~~g 92 (93)
+-+|+.|+.||+-.|
T Consensus 55 ~~El~nGCICCT~r~ 69 (323)
T COG0523 55 VVELTNGCICCTVRD 69 (323)
T ss_pred EEEeCCceEEEeccc
Confidence 789999999998543
No 5
>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]
Probab=6.90 E-value=1.8e+02 Score=22.22 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=12.6
Q ss_pred ccccCCcceeccccc
Q 034485 71 LGIDSTSSRSLSQGM 85 (93)
Q Consensus 71 Ls~~srs~~~LsqG~ 85 (93)
=+.|+|.|+-|+.|.
T Consensus 132 nS~DSr~yGplP~gl 146 (176)
T KOG0171|consen 132 NSLDSRNYGPLPMGL 146 (176)
T ss_pred CcccccccCCCchhh
Confidence 367899999999887
No 6
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=6.68 E-value=1.8e+02 Score=18.75 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=10.8
Q ss_pred CcceeccccccccC
Q 034485 76 TSSRSLSQGMLCSA 89 (93)
Q Consensus 76 rs~~~LsqG~~~~~ 89 (93)
.-.+..|||+.|+.
T Consensus 65 ~~~G~~S~GMl~s~ 78 (103)
T cd02796 65 KLRGVESEGMLCSA 78 (103)
T ss_pred eeCCcccchhCcch
Confidence 34578999999975
No 7
>PF11575 FhuF_C: FhuF 2Fe-2S C-terminal domain; InterPro: IPR024726 Ferric iron reductase (FhuF) is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B []. This entry represents the C-terminal domain that contains 4 conserved cysteine residues found to be part of a 2Fe-2S cluster [].; GO: 0051537 2 iron, 2 sulfur cluster binding
Probab=6.22 E-value=3.1e+02 Score=13.95 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=8.6
Q ss_pred ccccccccCCCC
Q 034485 81 LSQGMLCSANPG 92 (93)
Q Consensus 81 LsqG~~~~~~~g 92 (93)
++.|..|.++|-
T Consensus 10 ~~~~~~C~~CP~ 21 (22)
T PF11575_consen 10 LPGGGYCGTCPL 21 (22)
T ss_pred cCCCCccCCCCC
Confidence 466778888874
No 8
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....
Probab=6.21 E-value=1.6e+02 Score=19.03 Aligned_cols=14 Identities=43% Similarity=0.382 Sum_probs=9.7
Q ss_pred cceeccccccccCC
Q 034485 77 SSRSLSQGMLCSAN 90 (93)
Q Consensus 77 s~~~LsqG~~~~~~ 90 (93)
=.+..|||+.|+..
T Consensus 61 i~Gv~SeGMlls~~ 74 (95)
T PF01588_consen 61 IRGVESEGMLLSAS 74 (95)
T ss_dssp ETTEEEESEE-EEE
T ss_pred EEeccCCEEEEEee
Confidence 45688999988754
No 9
>PF01539 HCV_env: Hepatitis C virus envelope glycoprotein E1; InterPro: IPR002519 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0019031 viral envelope; PDB: 2KNU_A.
Probab=5.74 E-value=2e+02 Score=22.29 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=0.0
Q ss_pred cceeccccccccCCCC
Q 034485 77 SSRSLSQGMLCSANPG 92 (93)
Q Consensus 77 s~~~LsqG~~~~~~~g 92 (93)
-.-|.-|+++|+.+||
T Consensus 104 ~~h~~vqdCNCSiY~G 119 (190)
T PF01539_consen 104 RRHWTVQDCNCSIYPG 119 (190)
T ss_dssp ----------------
T ss_pred CcccccCCCccccCCC
Confidence 3457789999999998
No 10
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=5.64 E-value=2.9e+02 Score=15.70 Aligned_cols=6 Identities=67% Similarity=0.932 Sum_probs=0.0
Q ss_pred hhhHHH
Q 034485 57 PLHSAV 62 (93)
Q Consensus 57 PLHSAv 62 (93)
|||-|+
T Consensus 19 ~LH~A~ 24 (56)
T PF13857_consen 19 PLHWAA 24 (56)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Done!