Query 034485
Match_columns 93
No_of_seqs 102 out of 132
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ptq_A Protein kinase C delta 8.4 87 0.003 16.7 0.2 15 76-90 20-34 (50)
2 2enz_A NPKC-theta, protein kin 7.2 1.2E+02 0.0042 17.3 0.5 15 76-90 32-46 (65)
3 2enn_A NPKC-theta, protein kin 5.3 1.6E+02 0.0055 17.5 0.3 17 74-90 41-57 (77)
4 3uej_A NPKC-delta, protein kin 5.3 1.6E+02 0.0054 16.8 0.2 13 78-90 31-43 (65)
5 2eli_A Protein kinase C alpha 5.3 1.7E+02 0.0058 17.8 0.4 15 76-90 37-51 (85)
6 2db6_A SH3 and cysteine rich d 5.1 97 0.0033 18.4 -0.8 14 77-90 38-51 (74)
7 1y8f_A UNC-13 homolog A, MUNC1 4.3 1.8E+02 0.0062 16.7 0.0 14 77-90 34-47 (66)
8 1mkh_A Metrs;, C-terminal doma 4.2 2.2E+02 0.0074 18.3 0.3 14 76-89 72-85 (107)
9 1pyb_A Methionyl-tRNA syntheta 4.1 2.1E+02 0.0073 18.4 0.2 14 76-89 76-89 (111)
10 1gd7_A CSAA protein; oligonucl 3.9 2.1E+02 0.007 18.5 0.0 14 76-89 73-86 (109)
No 1
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=8.37 E-value=87 Score=16.73 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=10.6
Q ss_pred CcceeccccccccCC
Q 034485 76 TSSRSLSQGMLCSAN 90 (93)
Q Consensus 76 rs~~~LsqG~~~~~~ 90 (93)
.-||..-||..|..+
T Consensus 20 ~l~g~~~qg~~C~~C 34 (50)
T 1ptq_A 20 LLWGLVKQGLKCEDC 34 (50)
T ss_dssp BCCSSSSCEEEETTT
T ss_pred eeeccCCccCEeCCC
Confidence 347777899888654
No 2
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=7.17 E-value=1.2e+02 Score=17.32 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=10.6
Q ss_pred CcceeccccccccCC
Q 034485 76 TSSRSLSQGMLCSAN 90 (93)
Q Consensus 76 rs~~~LsqG~~~~~~ 90 (93)
.-|+..-||..|..+
T Consensus 32 ~l~Gl~~qg~~C~~C 46 (65)
T 2enz_A 32 LLWGLARQGLKCDAC 46 (65)
T ss_dssp BCCCSSSCSEEESSS
T ss_pred hheecCCcccccCCC
Confidence 347777888888654
No 3
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=5.32 E-value=1.6e+02 Score=17.53 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=11.5
Q ss_pred cCCcceeccccccccCC
Q 034485 74 DSTSSRSLSQGMLCSAN 90 (93)
Q Consensus 74 ~srs~~~LsqG~~~~~~ 90 (93)
..--|+..-||+.|..+
T Consensus 41 ~~~lwGl~kqG~~C~~C 57 (77)
T 2enn_A 41 HEFVWGLNKQGYQCRQC 57 (77)
T ss_dssp CCEECCTTCCEEECSSS
T ss_pred ChhhccccccccCcCCC
Confidence 34456667888888754
No 4
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=5.27 E-value=1.6e+02 Score=16.79 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=9.3
Q ss_pred ceeccccccccCC
Q 034485 78 SRSLSQGMLCSAN 90 (93)
Q Consensus 78 ~~~LsqG~~~~~~ 90 (93)
|+..-||..|..+
T Consensus 31 ~Gl~~qg~~C~~C 43 (65)
T 3uej_A 31 WGLVKQGLKCEDC 43 (65)
T ss_dssp CSSSSCEEEETTT
T ss_pred hccCceeeECCCC
Confidence 6667788887654
No 5
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.26 E-value=1.7e+02 Score=17.76 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=10.7
Q ss_pred CcceeccccccccCC
Q 034485 76 TSSRSLSQGMLCSAN 90 (93)
Q Consensus 76 rs~~~LsqG~~~~~~ 90 (93)
--|+..-||..|..+
T Consensus 37 ~l~Gl~kqG~~C~~C 51 (85)
T 2eli_A 37 LLYGLIHQGMKCDTC 51 (85)
T ss_dssp BCCCSSSCEEECSSS
T ss_pred cccccccCCCcCCCc
Confidence 347777888888654
No 6
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.14 E-value=97 Score=18.41 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=9.5
Q ss_pred cceeccccccccCC
Q 034485 77 SSRSLSQGMLCSAN 90 (93)
Q Consensus 77 s~~~LsqG~~~~~~ 90 (93)
-|+..-||..|..+
T Consensus 38 lwGl~kqG~~C~~C 51 (74)
T 2db6_A 38 IVLNNKFGLRCKNC 51 (74)
T ss_dssp ECHHHHEEEEESSS
T ss_pred hccccCCccccCCC
Confidence 46667788877654
No 7
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=4.29 E-value=1.8e+02 Score=16.66 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=9.7
Q ss_pred cceeccccccccCC
Q 034485 77 SSRSLSQGMLCSAN 90 (93)
Q Consensus 77 s~~~LsqG~~~~~~ 90 (93)
-|+..-||..|..+
T Consensus 34 l~Gl~~qg~~C~~C 47 (66)
T 1y8f_A 34 LWGIARQGMRCTEC 47 (66)
T ss_dssp CCSSCCEEEEETTT
T ss_pred hcccCcceeEcCCC
Confidence 46667788877654
No 8
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=4.21 E-value=2.2e+02 Score=18.29 Aligned_cols=14 Identities=43% Similarity=0.297 Sum_probs=10.3
Q ss_pred CcceeccccccccC
Q 034485 76 TSSRSLSQGMLCSA 89 (93)
Q Consensus 76 rs~~~LsqG~~~~~ 89 (93)
.=.+..|||+.|+.
T Consensus 72 klrGv~S~GMl~s~ 85 (107)
T 1mkh_A 72 KLRGIGSQGMLLAA 85 (107)
T ss_dssp EC-CCEECCCBCEE
T ss_pred EEcCeeeccEEEEc
Confidence 34678899999975
No 9
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=4.08 E-value=2.1e+02 Score=18.45 Aligned_cols=14 Identities=36% Similarity=0.252 Sum_probs=11.1
Q ss_pred CcceeccccccccC
Q 034485 76 TSSRSLSQGMLCSA 89 (93)
Q Consensus 76 rs~~~LsqG~~~~~ 89 (93)
.=.+..|||+.|+.
T Consensus 76 klrGv~S~GMl~sa 89 (111)
T 1pyb_A 76 KIFGIESQGMILAA 89 (111)
T ss_dssp CTTSCCBSSEECEE
T ss_pred EEccEeeccEEEEe
Confidence 44678899999975
No 10
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=3.93 E-value=2.1e+02 Score=18.51 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=11.0
Q ss_pred CcceeccccccccC
Q 034485 76 TSSRSLSQGMLCSA 89 (93)
Q Consensus 76 rs~~~LsqG~~~~~ 89 (93)
.=.+..|||+.|+.
T Consensus 73 klrGv~S~GMl~sa 86 (109)
T 1gd7_A 73 RVAGFLSEVLVLGV 86 (109)
T ss_dssp EETTEEECSEECEE
T ss_pred EeccEeecCEEEEe
Confidence 34578899999985
Done!