Query 034485
Match_columns 93
No_of_seqs 102 out of 132
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 04:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034485.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034485hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xa6a3 g.49.1.1 (A:209-270) B 7.1 50 0.0036 17.6 0.2 14 77-90 25-38 (62)
2 d1ixva_ d.211.1.1 (A:) 26S pro 6.4 84 0.0061 18.6 1.0 10 56-65 2-11 (229)
3 d1n11a_ d.211.1.1 (A:) Ankyrin 5.1 1E+02 0.0076 19.8 1.0 10 55-64 1-10 (408)
4 d1tbna_ g.49.1.1 (A:) Protein 4.8 85 0.0062 16.7 0.3 14 77-90 29-42 (66)
5 d1mkha_ b.40.4.4 (A:) C-termin 4.6 90 0.0066 18.5 0.3 12 78-89 74-85 (107)
6 d2fc6a1 g.66.1.1 (A:8-44) Targ 4.4 1.3E+02 0.0097 15.4 0.9 16 75-90 19-34 (37)
7 d1k1aa_ d.211.1.1 (A:) bcl-3 { 4.4 1.3E+02 0.0091 16.8 0.9 11 55-65 4-14 (228)
8 d2o3aa1 c.116.1.8 (A:1-167) Un 3.9 43 0.0031 22.6 -1.9 16 65-80 16-31 (167)
9 d1jjcb3 b.40.4.4 (B:39-151) Do 3.7 1E+02 0.0073 18.8 -0.0 13 77-89 70-82 (113)
10 d1b12a_ b.87.1.2 (A:) Type 1 s 3.4 88 0.0064 20.0 -0.6 14 72-85 202-215 (247)
No 1
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.11 E-value=50 Score=17.56 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=10.4
Q ss_pred cceeccccccccCC
Q 034485 77 SSRSLSQGMLCSAN 90 (93)
Q Consensus 77 s~~~LsqG~~~~~~ 90 (93)
-|+...||..|..+
T Consensus 25 i~g~~~~g~~C~~C 38 (62)
T d1xa6a3 25 MWGLIAQGVRCSDC 38 (62)
T ss_dssp CCTTTTCEECCSSS
T ss_pred ccccccCeEEcCCC
Confidence 46777888888765
No 2
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.37 E-value=84 Score=18.59 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=6.4
Q ss_pred chhhHHHHHh
Q 034485 56 LPLHSAVSSA 65 (93)
Q Consensus 56 lPLHSAvAsA 65 (93)
.|||.|+...
T Consensus 2 ~pLh~A~~~g 11 (229)
T d1ixva_ 2 YPLHQACMEN 11 (229)
T ss_dssp CHHHHHHHHT
T ss_pred HhHHHHHHcC
Confidence 3777777653
No 3
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.14 E-value=1e+02 Score=19.76 Aligned_cols=10 Identities=50% Similarity=0.551 Sum_probs=6.2
Q ss_pred cchhhHHHHH
Q 034485 55 LLPLHSAVSS 64 (93)
Q Consensus 55 llPLHSAvAs 64 (93)
|-|||-|+..
T Consensus 1 ~TpL~~Aa~~ 10 (408)
T d1n11a_ 1 LTPLHVASFM 10 (408)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHC
Confidence 4577777653
No 4
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}
Probab=4.77 E-value=85 Score=16.71 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=9.2
Q ss_pred cceeccccccccCC
Q 034485 77 SSRSLSQGMLCSAN 90 (93)
Q Consensus 77 s~~~LsqG~~~~~~ 90 (93)
-|+...||+.|..+
T Consensus 29 i~g~~~~g~~C~~C 42 (66)
T d1tbna_ 29 LYGLVHQGMKCSCC 42 (66)
T ss_dssp CCTTSSSCEEETTT
T ss_pred ccCcccCccccCcc
Confidence 35666678877654
No 5
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=4.62 E-value=90 Score=18.49 Aligned_cols=12 Identities=50% Similarity=0.401 Sum_probs=9.3
Q ss_pred ceeccccccccC
Q 034485 78 SRSLSQGMLCSA 89 (93)
Q Consensus 78 ~~~LsqG~~~~~ 89 (93)
-|..|||+.|+.
T Consensus 74 rGv~SeGMl~s~ 85 (107)
T d1mkha_ 74 RGIGSQGMLLAA 85 (107)
T ss_dssp -CCEECCCBCEE
T ss_pred CCccCCEEEEEe
Confidence 578999999874
No 6
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.43 E-value=1.3e+02 Score=15.38 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=11.7
Q ss_pred CCcceeccccccccCC
Q 034485 75 STSSRSLSQGMLCSAN 90 (93)
Q Consensus 75 srs~~~LsqG~~~~~~ 90 (93)
..+|||-+.|.+|-..
T Consensus 19 FsAyGWCP~G~qCp~S 34 (37)
T d2fc6a1 19 FSAYGWCPLGPQCPQS 34 (37)
T ss_dssp HHHTCCCTTGGGCSSB
T ss_pred hhhccccCCCCCCccc
Confidence 3568899999887543
No 7
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.37 E-value=1.3e+02 Score=16.77 Aligned_cols=11 Identities=45% Similarity=0.486 Sum_probs=7.7
Q ss_pred cchhhHHHHHh
Q 034485 55 LLPLHSAVSSA 65 (93)
Q Consensus 55 llPLHSAvAsA 65 (93)
.-|||.|+..-
T Consensus 4 ~TpLh~A~~~g 14 (228)
T d1k1aa_ 4 DTPLHIAVVQG 14 (228)
T ss_dssp CCHHHHHHHTT
T ss_pred ccHHHHHHHcC
Confidence 45889888654
No 8
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.92 E-value=43 Score=22.58 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=13.5
Q ss_pred hhhhccccccCCccee
Q 034485 65 ARLTSCLGIDSTSSRS 80 (93)
Q Consensus 65 ArltS~Ls~~srs~~~ 80 (93)
-|+|.|+++..|++|+
T Consensus 16 ~RiTTHvaLtARAfGA 31 (167)
T d2o3aa1 16 KRISTHVALTARAFGA 31 (167)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHhcC
Confidence 3789999999998886
No 9
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=3.73 E-value=1e+02 Score=18.82 Aligned_cols=13 Identities=31% Similarity=0.118 Sum_probs=9.9
Q ss_pred cceeccccccccC
Q 034485 77 SSRSLSQGMLCSA 89 (93)
Q Consensus 77 s~~~LsqG~~~~~ 89 (93)
=-+..|||+.|+.
T Consensus 70 irGv~S~GMlcS~ 82 (113)
T d1jjcb3 70 IQGVRSFGMALSP 82 (113)
T ss_dssp ETTEEEESEECCH
T ss_pred ecCEeeeeEEecH
Confidence 3568899999874
No 10
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=3.35 E-value=88 Score=20.00 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=9.4
Q ss_pred cccCCcceeccccc
Q 034485 72 GIDSTSSRSLSQGM 85 (93)
Q Consensus 72 s~~srs~~~LsqG~ 85 (93)
|.|||-||-+++..
T Consensus 202 S~DSR~wG~Vp~~~ 215 (247)
T d1b12a_ 202 SADSRYWGFVPEAN 215 (247)
T ss_dssp CCCHHHHCCEEGGG
T ss_pred CccccccCcCCHHH
Confidence 66777777776654
Done!